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5TD5
Asym. Unit
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Asym.Unit (108 KB)
Biol.Unit 1 (100 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN APOBEC3B VARIANT COMPLEXED WITH SSDNA
Authors
:
K. Shi, S. Banerjee, K. Kurahashi, H. Aihara
Date
:
16 Sep 16 (Deposition) - 28 Dec 16 (Release) - 22 Feb 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.72
Chains
:
Asym. Unit : A,C
Biol. Unit 1: A,C (1x)
Keywords
:
Deaminase, Dna Substrate Complex, Hydrolase-Dna Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. Shi, M. A. Carpenter, S. Banerjee, N. M. Shaban, K. Kurahashi, D. J. Salamango, J. L. Mccann, G. J. Starrett, J. V. Duffy, O. Demir, R. E. Amaro, D. A. Harki, R. S. Harris, H. Aihara
Structural Basis For Targeted Dna Cytosine Deamination And Mutagenesis By Apobec3A And Apobec3B.
Nat. Struct. Mol. Biol. V. 24 131 2017
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Hetero Components
(4, 18)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
2e: 1,2-ETHANEDIOL (EDOe)
2f: 1,2-ETHANEDIOL (EDOf)
3a: IODIDE ION (IODa)
3b: IODIDE ION (IODb)
3c: IODIDE ION (IODc)
3d: IODIDE ION (IODd)
3e: IODIDE ION (IODe)
3f: IODIDE ION (IODf)
3g: IODIDE ION (IODg)
3h: IODIDE ION (IODh)
3i: IODIDE ION (IODi)
4a: ZINC ION (ZNa)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CL
2
Ligand/Ion
CHLORIDE ION
2
EDO
6
Ligand/Ion
1,2-ETHANEDIOL
3
IOD
9
Ligand/Ion
IODIDE ION
4
ZN
1
Ligand/Ion
ZINC ION
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Sites
(14, 14)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:253 , CYS A:284 , CYS A:289 , CL A:417
binding site for residue ZN A 401
02
AC2
SOFTWARE
HOH A:569
binding site for residue IOD A 403
03
AC3
SOFTWARE
ASP A:194 , DA C:1
binding site for residue IOD A 404
04
AC4
SOFTWARE
ARG A:211 , HIS A:212 , DT C:-2
binding site for residue IOD A 405
05
AC5
SOFTWARE
ARG A:211 , HIS A:212 , DT C:-2 , DA C:1
binding site for residue IOD A 407
06
AC6
SOFTWARE
HOH A:527
binding site for residue EDO A 410
07
AC7
SOFTWARE
GLY A:251 , ARG A:252 , HIS A:253 , LEU A:256 , TRP A:287 , CYS A:289 , EDO A:412 , HOH A:502
binding site for residue EDO A 411
08
AC8
SOFTWARE
HIS A:253 , TRP A:287 , TYR A:313 , EDO A:411 , DC C:0 , DA C:1
binding site for residue EDO A 412
09
AC9
SOFTWARE
ARG A:374 , LEU A:377 , HOH A:508
binding site for residue EDO A 413
10
AD1
SOFTWARE
ARG A:190 , TYR A:191 , TYR A:218 , GLY A:236 , PHE A:237 , HOH A:550
binding site for residue EDO A 414
11
AD2
SOFTWARE
GLY A:205 , TRP A:281 , DT C:-1
binding site for residue EDO A 415
12
AD3
SOFTWARE
HIS A:365
binding site for residue CL A 416
13
AD4
SOFTWARE
HIS A:253 , PRO A:283 , CYS A:284 , CYS A:289 , ZN A:401 , DC C:0
binding site for residue CL A 417
14
AD5
SOFTWARE
ASP A:194 , DA C:1
binding site for residue IOD C 101
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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SCOP Domains
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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