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5T6N
Asym. Unit
Info
Asym.Unit (277 KB)
Biol.Unit 1 (267 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE A/HONG KONG/1/1968 (H3N2) INFLUENZA VIRUS HEMAGGLUTININ IN COMPLEX WITH THE ANTIVIRAL DRUG ARBIDOL
Authors
:
R. U. Kadam, I. A. Wilson
Date
:
01 Sep 16 (Deposition) - 04 Jan 17 (Release) - 25 Jan 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.54
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C,D,E,F (1x)
Keywords
:
Viral Protein, Ectodomain, N-Glycosylation, Antiviral
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. U. Kadam, I. A. Wilson
Structural Basis Of Influenza Virus Fusion Inhibition By Th Antiviral Drug Arbidol.
Proc. Natl. Acad. Sci. V. 114 206 2017 U. S. A.
[
close entry info
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Hetero Components
(6, 40)
Info
All Hetero Components
1a: ETHYL 6-BROMO-4-[(DIMETHYLAMINO)ME... (75Ua)
1b: ETHYL 6-BROMO-4-[(DIMETHYLAMINO)ME... (75Ub)
1c: ETHYL 6-BROMO-4-[(DIMETHYLAMINO)ME... (75Uc)
2a: BETA-D-MANNOSE (BMAa)
2b: BETA-D-MANNOSE (BMAb)
2c: BETA-D-MANNOSE (BMAc)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
4a: ALPHA-D-MANNOSE (MANa)
4b: ALPHA-D-MANNOSE (MANb)
4c: ALPHA-D-MANNOSE (MANc)
5a: N-ACETYL-D-GLUCOSAMINE (NAGa)
5b: N-ACETYL-D-GLUCOSAMINE (NAGb)
5c: N-ACETYL-D-GLUCOSAMINE (NAGc)
5d: N-ACETYL-D-GLUCOSAMINE (NAGd)
5e: N-ACETYL-D-GLUCOSAMINE (NAGe)
5f: N-ACETYL-D-GLUCOSAMINE (NAGf)
5g: N-ACETYL-D-GLUCOSAMINE (NAGg)
5h: N-ACETYL-D-GLUCOSAMINE (NAGh)
5i: N-ACETYL-D-GLUCOSAMINE (NAGi)
5j: N-ACETYL-D-GLUCOSAMINE (NAGj)
5k: N-ACETYL-D-GLUCOSAMINE (NAGk)
5l: N-ACETYL-D-GLUCOSAMINE (NAGl)
5m: N-ACETYL-D-GLUCOSAMINE (NAGm)
5n: N-ACETYL-D-GLUCOSAMINE (NAGn)
5o: N-ACETYL-D-GLUCOSAMINE (NAGo)
5p: N-ACETYL-D-GLUCOSAMINE (NAGp)
5q: N-ACETYL-D-GLUCOSAMINE (NAGq)
5r: N-ACETYL-D-GLUCOSAMINE (NAGr)
5s: N-ACETYL-D-GLUCOSAMINE (NAGs)
5t: N-ACETYL-D-GLUCOSAMINE (NAGt)
5u: N-ACETYL-D-GLUCOSAMINE (NAGu)
5v: N-ACETYL-D-GLUCOSAMINE (NAGv)
5w: N-ACETYL-D-GLUCOSAMINE (NAGw)
5x: N-ACETYL-D-GLUCOSAMINE (NAGx)
5y: N-ACETYL-D-GLUCOSAMINE (NAGy)
6a: SULFATE ION (SO4a)
6b: SULFATE ION (SO4b)
6c: SULFATE ION (SO4c)
6d: SULFATE ION (SO4d)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
75U
3
Ligand/Ion
ETHYL 6-BROMO-4-[(DIMETHYLAMINO)METHYL]-5-HYDROXY-1-METHYL-2-[(PHENYLSULFANYL)METHYL]-1H-INDOLE-3-CARBOXYLATE
2
BMA
3
Ligand/Ion
BETA-D-MANNOSE
3
GOL
2
Ligand/Ion
GLYCEROL
4
MAN
3
Ligand/Ion
ALPHA-D-MANNOSE
5
NAG
25
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
6
SO4
4
Ligand/Ion
SULFATE ION
[
close Hetero Component info
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Sites
(25, 25)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
20: AE2 (SOFTWARE)
21: AE3 (SOFTWARE)
22: AE4 (SOFTWARE)
23: AE5 (SOFTWARE)
24: AE6 (SOFTWARE)
25: AE7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LYS A:310 , GLN A:311 , TYR B:94 , GLU B:97 , HOH B:325 , PHE E:294 , LYS E:307 , ARG F:54 , VAL F:55 , GLU F:57 , LYS F:58
binding site for residue 75U B 201
02
AC2
SOFTWARE
LYS B:139 , ARG F:127 , HIS F:159 , ASP F:160
binding site for residue SO4 B 203
03
AC3
SOFTWARE
ARG B:127 , HIS B:159 , ASP B:160 , LYS D:139
binding site for residue SO4 B 204
04
AC4
SOFTWARE
ARG A:208 , HOH A:544 , SER C:95 , ARG C:224 , HOH C:569
binding site for residue SO4 C 410
05
AC5
SOFTWARE
LYS C:92 , ASP C:271 , PRO C:273 , HOH C:506
binding site for residue GOL C 411
06
AC6
SOFTWARE
PHE A:294 , LYS A:307 , ARG B:54 , GLU B:57 , LYS C:310 , GLN C:311 , ASP D:90 , SER D:93 , TYR D:94 , GLU D:97 , ALA D:101
binding site for residue 75U D 201
07
AC7
SOFTWARE
PHE C:294 , ARG D:54 , VAL D:55 , GLU D:57 , LYS D:58 , THR D:59 , LYS E:310 , GLN E:311 , SER F:93 , TYR F:94 , GLU F:97
binding site for residue 75U D 202
08
AC8
SOFTWARE
ARG D:127 , HIS D:159 , ASP D:160 , LYS F:139
binding site for residue SO4 D 205
09
AC9
SOFTWARE
ARG E:90 , LYS E:92 , ASP E:271 , PRO E:273 , HOH E:506 , HOH E:522 , HOH E:554
binding site for residue GOL E 410
10
AD1
SOFTWARE
ASN A:22 , GLU A:35
binding site for Mono-Saccharide NAG A 401 bound to ASN A 22
11
AD2
SOFTWARE
ASN A:38 , THR A:318
binding site for Mono-Saccharide NAG A 402 bound to ASN A 38
12
AD3
SOFTWARE
ASN A:81 , GLU A:119
binding site for Mono-Saccharide NAG A 403 bound to ASN A 81
13
AD4
SOFTWARE
ASN A:165 , THR A:167 , SER C:219
binding site for Poly-Saccharide residues NAG A 404 through MAN A 407 bound to ASN A 165
14
AD5
SOFTWARE
SER A:45 , ASN A:285 , VAL A:297 , HOH A:536 , GLU B:69
binding site for Poly-Saccharide residues NAG A 408 through NAG A 409 bound to ASN A 285
15
AD6
SOFTWARE
ALA B:147 , GLU B:150 , ASN B:154
binding site for Mono-Saccharide NAG B 202 bound to ASN B 154
16
AD7
SOFTWARE
ASN C:38 , THR C:318 , GLY D:31 , LEU D:52
binding site for Poly-Saccharide residues NAG C 401 through NAG C 402 bound to ASN C 38
17
AD8
SOFTWARE
PRO A:324 , LYS A:326 , ASN C:81 , GLU C:119 , PHE C:120 , ILE C:121 , TYR C:257
binding site for Poly-Saccharide residues NAG C 403 through NAG C 404 bound to ASN C 81
18
AD9
SOFTWARE
ASN C:165 , THR C:167 , SER E:219 , PRO E:221 , TRP E:222
binding site for Poly-Saccharide residues NAG C 405 through BMA C 407 bound to ASN C 165
19
AE1
SOFTWARE
ASN C:285 , HOH C:546
binding site for Poly-Saccharide residues NAG C 408 through NAG C 409 bound to ASN C 285
20
AE2
SOFTWARE
ALA D:147 , GLU D:150 , ASN D:154 , THR D:156
binding site for Poly-Saccharide residues NAG D 203 through NAG D 204 bound to ASN D 154
21
AE3
SOFTWARE
PRO A:143 , ASN E:38 , THR E:318
binding site for Mono-Saccharide NAG E 401 bound to ASN E 38
22
AE4
SOFTWARE
GLN E:80 , ASN E:81 , GLU E:119 , PHE E:120 , ILE E:121 , HOH E:577
binding site for Mono-Saccharide NAG E 402 bound to ASN E 81
23
AE5
SOFTWARE
SER A:219 , PRO A:221 , TRP A:222 , HOH A:501 , ASN E:165 , THR E:167 , HOH E:543
binding site for Poly-Saccharide residues NAG E 403 through MAN E 407 bound to ASN E 165
24
AE6
SOFTWARE
ASN E:285 , VAL E:297 , GLU F:69
binding site for Poly-Saccharide residues NAG E 408 through NAG E 409 bound to ASN E 285
25
AE7
SOFTWARE
ALA F:147 , GLU F:150 , ASN F:154
binding site for Mono-Saccharide NAG F 201 bound to ASN F 154
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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SCOP Domains
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CATH Domains
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Pfam Domains
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Asym.Unit (277 KB)
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