PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
5T4G
Asym. Unit
Info
Asym.Unit (150 KB)
Biol.Unit 1 (143 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
CRYSTAL STRUCTURE OF BHGH81 IN COMPLEX WITH LAMINARIN
Authors
:
B. Pluvinage, A. B. Boraston
Date
:
29 Aug 16 (Deposition) - 28 Jun 17 (Release) - 28 Jun 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
(Alpha/Beta)6 Barrel, Glycoside Hydrolase, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. Pluvinage, A. Hettle, A. Fillo, K. Abe, P. Massel, D. Langelaan, S. P. Smith, A. B. Boraston
The Quaternary Structure Of Beta-1, 3-Glucan Contributes To Its Recognition And Hydrolysis By A Multimodular Family 81 Glycoside Hydrolase
To Be Published
[
close entry info
]
Hetero Components
(4, 44)
Info
All Hetero Components
1a: BETA-D-GLUCOSE (BGCa)
1b: BETA-D-GLUCOSE (BGCb)
1c: BETA-D-GLUCOSE (BGCc)
1d: BETA-D-GLUCOSE (BGCd)
1e: BETA-D-GLUCOSE (BGCe)
1f: BETA-D-GLUCOSE (BGCf)
1g: BETA-D-GLUCOSE (BGCg)
1h: BETA-D-GLUCOSE (BGCh)
1i: BETA-D-GLUCOSE (BGCi)
1j: BETA-D-GLUCOSE (BGCj)
1k: BETA-D-GLUCOSE (BGCk)
1l: BETA-D-GLUCOSE (BGCl)
1m: BETA-D-GLUCOSE (BGCm)
1n: BETA-D-GLUCOSE (BGCn)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
2e: 1,2-ETHANEDIOL (EDOe)
2f: 1,2-ETHANEDIOL (EDOf)
2g: 1,2-ETHANEDIOL (EDOg)
2h: 1,2-ETHANEDIOL (EDOh)
2i: 1,2-ETHANEDIOL (EDOi)
2j: 1,2-ETHANEDIOL (EDOj)
2k: 1,2-ETHANEDIOL (EDOk)
2l: 1,2-ETHANEDIOL (EDOl)
2m: 1,2-ETHANEDIOL (EDOm)
2n: 1,2-ETHANEDIOL (EDOn)
2o: 1,2-ETHANEDIOL (EDOo)
2p: 1,2-ETHANEDIOL (EDOp)
2q: 1,2-ETHANEDIOL (EDOq)
3a: ALPHA-D-GLUCOSE (GLCa)
4a: PHOSPHATE ION (PO4a)
4b: PHOSPHATE ION (PO4b)
4c: PHOSPHATE ION (PO4c)
4d: PHOSPHATE ION (PO4d)
4e: PHOSPHATE ION (PO4e)
4f: PHOSPHATE ION (PO4f)
4g: PHOSPHATE ION (PO4g)
4h: PHOSPHATE ION (PO4h)
4i: PHOSPHATE ION (PO4i)
4j: PHOSPHATE ION (PO4j)
4k: PHOSPHATE ION (PO4k)
4l: PHOSPHATE ION (PO4l)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BGC
14
Ligand/Ion
BETA-D-GLUCOSE
2
EDO
17
Ligand/Ion
1,2-ETHANEDIOL
3
GLC
1
Ligand/Ion
ALPHA-D-GLUCOSE
4
PO4
12
Ligand/Ion
PHOSPHATE ION
[
close Hetero Component info
]
Sites
(32, 32)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
20: AE2 (SOFTWARE)
21: AE3 (SOFTWARE)
22: AE4 (SOFTWARE)
23: AE5 (SOFTWARE)
24: AE6 (SOFTWARE)
25: AE7 (SOFTWARE)
26: AE8 (SOFTWARE)
27: AE9 (SOFTWARE)
28: AF1 (SOFTWARE)
29: AF2 (SOFTWARE)
30: AF3 (SOFTWARE)
31: AF4 (SOFTWARE)
32: AF5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:641 , PRO A:642 , ASP A:643 , TYR A:644 , EDO A:831 , HOH A:938
binding site for residue PO4 A 816
02
AC2
SOFTWARE
HIS A:315 , SER A:579 , ASN A:582 , GLU A:583 , HIS A:589 , HOH A:988 , HOH A:989
binding site for residue PO4 A 817
03
AC3
SOFTWARE
ASP A:201 , TRP A:203 , SER A:213 , HIS A:217 , HIS A:219 , LYS A:253 , HOH A:916
binding site for residue PO4 A 818
04
AC4
SOFTWARE
GLU A:280 , GLU A:559 , ARG A:567 , HIS A:732 , PRO A:733 , HOH A:1007 , HOH A:1079 , HOH A:1367
binding site for residue PO4 A 819
05
AC5
SOFTWARE
ASP A:365 , ARG A:368 , GLU A:685 , TYR A:712 , HIS A:716 , HOH A:972
binding site for residue PO4 A 820
06
AC6
SOFTWARE
ALA A:113 , PRO A:114 , HIS A:115 , HOH A:1059
binding site for residue PO4 A 821
07
AC7
SOFTWARE
MET A:578 , ASN A:582 , HIS A:640 , HOH A:988 , HOH A:989 , HOH A:991 , HOH A:1173 , HOH A:1322
binding site for residue PO4 A 822
08
AC8
SOFTWARE
HIS A:458 , BGC A:804 , BGC A:805 , BGC A:814 , HOH A:917 , HOH A:937 , HOH A:1256
binding site for residue PO4 A 823
09
AC9
SOFTWARE
HIS A:170 , ASP A:189 , HOH A:953 , HOH A:1104
binding site for residue PO4 A 824
10
AD1
SOFTWARE
GLU A:124 , GLU A:413 , ARG A:416 , ALA A:484
binding site for residue PO4 A 825
11
AD2
SOFTWARE
HIS A:120 , HIS A:129 , HIS A:131 , EDO A:833 , HOH A:965 , HOH A:1292
binding site for residue PO4 A 826
12
AD3
SOFTWARE
ARG A:509 , ASP A:510 , TYR A:516 , EDO A:842 , HOH A:978 , HOH A:1043 , HOH A:1101 , HOH A:1153 , HOH A:1164
binding site for residue PO4 A 827
13
AD4
SOFTWARE
TYR A:313 , GLY A:335 , THR A:336 , GLU A:591 , HOH A:904 , HOH A:905 , HOH A:951
binding site for residue EDO A 828
14
AD5
SOFTWARE
ASP A:155 , ASN A:157 , TYR A:160 , THR A:175 , VAL A:269 , ARG A:270 , HOH A:1075
binding site for residue EDO A 829
15
AD6
SOFTWARE
ASP A:254 , GLY A:255 , ASN A:256 , ASP A:643 , HOH A:1150
binding site for residue EDO A 830
16
AD7
SOFTWARE
GLU A:204 , ASN A:206 , VAL A:588 , HIS A:589 , HIS A:641 , PO4 A:816 , HOH A:1009
binding site for residue EDO A 831
17
AD8
SOFTWARE
SER A:319 , SER A:320 , GLN A:323 , ARG A:344 , PHE A:345 , THR A:346
binding site for residue EDO A 832
18
AD9
SOFTWARE
HIS A:129 , HIS A:131 , LYS A:609 , ASP A:611 , PO4 A:826 , HOH A:908 , HOH A:911 , HOH A:1238 , HOH A:1421
binding site for residue EDO A 833
19
AE1
SOFTWARE
ASP A:45 , GLY A:438 , HOH A:1203 , HOH A:1349
binding site for residue EDO A 834
20
AE2
SOFTWARE
ARG A:103 , GLU A:105 , HOH A:1207
binding site for residue EDO A 835
21
AE3
SOFTWARE
GLY A:407 , TYR A:409 , GLU A:410 , BGC A:809 , BGC A:810 , HOH A:1072 , HOH A:1389
binding site for residue EDO A 836
22
AE4
SOFTWARE
ASP A:155 , TYR A:156 , HOH A:929 , HOH A:1098
binding site for residue EDO A 837
23
AE5
SOFTWARE
GLN A:171 , GLU A:186 , GLU A:188
binding site for residue EDO A 838
24
AE6
SOFTWARE
GLU A:262 , GLN A:263 , ALA A:300 , PRO A:301 , HOH A:1115
binding site for residue EDO A 839
25
AE7
SOFTWARE
SER A:357 , LEU A:358 , THR A:398 , GLN A:710 , TRP A:714 , HOH A:914 , HOH A:1107
binding site for residue EDO A 840
26
AE8
SOFTWARE
ASP A:275 , THR A:277 , THR A:286 , THR A:288
binding site for residue EDO A 841
27
AE9
SOFTWARE
GLN A:76 , TYR A:156 , ASN A:157 , ASP A:158 , TYR A:516 , PO4 A:827 , HOH A:1043 , HOH A:1101 , HOH A:1105
binding site for residue EDO A 842
28
AF1
SOFTWARE
SER A:384 , LYS A:439 , ASN A:440
binding site for residue EDO A 843
29
AF2
SOFTWARE
THR A:284 , GLU A:348 , LEU A:349 , THR A:350
binding site for residue EDO A 844
30
AF3
SOFTWARE
TYR A:387 , LYS A:391 , HIS A:458 , ASP A:466 , PHE A:469 , HIS A:470 , GLU A:542 , GLU A:546 , TRP A:615 , ILE A:626 , TRP A:664 , GLU A:699 , ARG A:704 , BGC A:805 , HOH A:910 , HOH A:973 , HOH A:1114 , HOH A:1148
binding site for Poly-Saccharide residues GLC A 801 through BGC A 803
31
AF4
SOFTWARE
TYR A:387 , LYS A:391 , HIS A:458 , ARG A:463 , ASN A:465 , ASP A:466 , ALA A:529 , ASP A:530 , PHE A:535 , ASN A:540 , TRP A:615 , TRP A:664 , GLU A:699 , ARG A:704 , GLC A:801 , PO4 A:823 , HOH A:910 , HOH A:917 , HOH A:973 , HOH A:995 , HOH A:1004 , HOH A:1114 , HOH A:1148 , HOH A:1232 , HOH A:1329
binding site for Poly-Saccharide residues BGC A 804 through BGC A 805
32
AF5
SOFTWARE
ASP A:51 , GLY A:53 , PHE A:54 , GLN A:57 , MET A:91 , GLU A:367 , GLY A:383 , SER A:384 , ASP A:385 , TYR A:409 , PHE A:535 , ASP A:536 , ALA A:537 , ILE A:604 , TRP A:606 , LYS A:609 , ASP A:611 , THR A:614 , TRP A:615 , TRP A:616 , ASN A:617 , GLY A:778 , PO4 A:823 , EDO A:836 , HOH A:906 , HOH A:908 , HOH A:937 , HOH A:1072 , HOH A:1096 , HOH A:1141 , HOH A:1155 , HOH A:1313 , HOH A:1401
binding site for Poly-Saccharide residues BGC A 806 through BGC A 815
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (150 KB)
Header - Asym.Unit
Biol.Unit 1 (143 KB)
Header - Biol.Unit 1
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
5T4G
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help