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5T3X
Asym. Unit
Info
Asym.Unit (552 KB)
Biol.Unit 1, α-C (1.5 MB)
Biol.Unit 1 (1.5 MB)
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Title
:
3.9 ANGSTROM CRYSTAL STRUCTURE OF A FULLY AND NATIVELY GLYCOSYLATED BG505 SOSIP.664 HIV-1 ENV TRIMER IN COMPLEX WITH THE BROADLY NEUTRALIZING ANTIBODIES IOMA AND 10-1074.
Authors
:
H. B. Gristick, P. J. Bjorkman
Date
:
26 Aug 16 (Deposition) - 05 Oct 16 (Release) - 19 Oct 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.90
Chains
:
Asym. Unit : B,D,E,G,H,L
Biol. Unit 1: B,D,E,G,H,L (3x)
Keywords
:
Hiv, N-Linked Glycosylation, Broadly Neutralizing Antibodies, Viral Protein-Immune System Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. B. Gristick, L. Von Boehmer, A. P. West, M. Schamber, A. Gazumyan, J. Golijanin, M. S. Seaman, G. Fatkenheuer, F. Klein, M. C. Nussenzweig, P. J. Bjorkman
Natively Glycosylated Hiv-1 Env Structure Reveals New Mode For Antibody Recognition Of The Cd4-Binding Site.
Nat. Struct. Mol. Biol. V. 23 906 2016
[
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Hetero Components
(6, 114)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
1c: BETA-D-MANNOSE (BMAc)
1d: BETA-D-MANNOSE (BMAd)
1e: BETA-D-MANNOSE (BMAe)
1f: BETA-D-MANNOSE (BMAf)
1g: BETA-D-MANNOSE (BMAg)
1h: BETA-D-MANNOSE (BMAh)
1i: BETA-D-MANNOSE (BMAi)
1j: BETA-D-MANNOSE (BMAj)
1k: BETA-D-MANNOSE (BMAk)
1l: BETA-D-MANNOSE (BMAl)
1m: BETA-D-MANNOSE (BMAm)
2a: ALPHA-L-FUCOSE (FUCa)
2b: ALPHA-L-FUCOSE (FUCb)
2c: ALPHA-L-FUCOSE (FUCc)
2d: ALPHA-L-FUCOSE (FUCd)
2e: ALPHA-L-FUCOSE (FUCe)
2f: ALPHA-L-FUCOSE (FUCf)
2g: ALPHA-L-FUCOSE (FUCg)
3a: BETA-D-GALACTOSE (GALa)
3b: BETA-D-GALACTOSE (GALb)
3c: BETA-D-GALACTOSE (GALc)
3d: BETA-D-GALACTOSE (GALd)
3e: BETA-D-GALACTOSE (GALe)
3f: BETA-D-GALACTOSE (GALf)
3g: BETA-D-GALACTOSE (GALg)
3h: BETA-D-GALACTOSE (GALh)
3i: BETA-D-GALACTOSE (GALi)
4a: ALPHA-D-MANNOSE (MANa)
4aa: ALPHA-D-MANNOSE (MANaa)
4ab: ALPHA-D-MANNOSE (MANab)
4ac: ALPHA-D-MANNOSE (MANac)
4ad: ALPHA-D-MANNOSE (MANad)
4ae: ALPHA-D-MANNOSE (MANae)
4b: ALPHA-D-MANNOSE (MANb)
4c: ALPHA-D-MANNOSE (MANc)
4d: ALPHA-D-MANNOSE (MANd)
4e: ALPHA-D-MANNOSE (MANe)
4f: ALPHA-D-MANNOSE (MANf)
4g: ALPHA-D-MANNOSE (MANg)
4h: ALPHA-D-MANNOSE (MANh)
4i: ALPHA-D-MANNOSE (MANi)
4j: ALPHA-D-MANNOSE (MANj)
4k: ALPHA-D-MANNOSE (MANk)
4l: ALPHA-D-MANNOSE (MANl)
4m: ALPHA-D-MANNOSE (MANm)
4n: ALPHA-D-MANNOSE (MANn)
4o: ALPHA-D-MANNOSE (MANo)
4p: ALPHA-D-MANNOSE (MANp)
4q: ALPHA-D-MANNOSE (MANq)
4r: ALPHA-D-MANNOSE (MANr)
4s: ALPHA-D-MANNOSE (MANs)
4t: ALPHA-D-MANNOSE (MANt)
4u: ALPHA-D-MANNOSE (MANu)
4v: ALPHA-D-MANNOSE (MANv)
4w: ALPHA-D-MANNOSE (MANw)
4x: ALPHA-D-MANNOSE (MANx)
4y: ALPHA-D-MANNOSE (MANy)
4z: ALPHA-D-MANNOSE (MANz)
5a: N-ACETYL-D-GLUCOSAMINE (NAGa)
5aa: N-ACETYL-D-GLUCOSAMINE (NAGaa)
5ab: N-ACETYL-D-GLUCOSAMINE (NAGab)
5ac: N-ACETYL-D-GLUCOSAMINE (NAGac)
5ad: N-ACETYL-D-GLUCOSAMINE (NAGad)
5ae: N-ACETYL-D-GLUCOSAMINE (NAGae)
5af: N-ACETYL-D-GLUCOSAMINE (NAGaf)
5ag: N-ACETYL-D-GLUCOSAMINE (NAGag)
5ah: N-ACETYL-D-GLUCOSAMINE (NAGah)
5ai: N-ACETYL-D-GLUCOSAMINE (NAGai)
5aj: N-ACETYL-D-GLUCOSAMINE (NAGaj)
5ak: N-ACETYL-D-GLUCOSAMINE (NAGak)
5al: N-ACETYL-D-GLUCOSAMINE (NAGal)
5am: N-ACETYL-D-GLUCOSAMINE (NAGam)
5an: N-ACETYL-D-GLUCOSAMINE (NAGan)
5ao: N-ACETYL-D-GLUCOSAMINE (NAGao)
5ap: N-ACETYL-D-GLUCOSAMINE (NAGap)
5aq: N-ACETYL-D-GLUCOSAMINE (NAGaq)
5ar: N-ACETYL-D-GLUCOSAMINE (NAGar)
5as: N-ACETYL-D-GLUCOSAMINE (NAGas)
5at: N-ACETYL-D-GLUCOSAMINE (NAGat)
5au: N-ACETYL-D-GLUCOSAMINE (NAGau)
5av: N-ACETYL-D-GLUCOSAMINE (NAGav)
5aw: N-ACETYL-D-GLUCOSAMINE (NAGaw)
5ax: N-ACETYL-D-GLUCOSAMINE (NAGax)
5ay: N-ACETYL-D-GLUCOSAMINE (NAGay)
5b: N-ACETYL-D-GLUCOSAMINE (NAGb)
5c: N-ACETYL-D-GLUCOSAMINE (NAGc)
5d: N-ACETYL-D-GLUCOSAMINE (NAGd)
5e: N-ACETYL-D-GLUCOSAMINE (NAGe)
5f: N-ACETYL-D-GLUCOSAMINE (NAGf)
5g: N-ACETYL-D-GLUCOSAMINE (NAGg)
5h: N-ACETYL-D-GLUCOSAMINE (NAGh)
5i: N-ACETYL-D-GLUCOSAMINE (NAGi)
5j: N-ACETYL-D-GLUCOSAMINE (NAGj)
5k: N-ACETYL-D-GLUCOSAMINE (NAGk)
5l: N-ACETYL-D-GLUCOSAMINE (NAGl)
5m: N-ACETYL-D-GLUCOSAMINE (NAGm)
5n: N-ACETYL-D-GLUCOSAMINE (NAGn)
5o: N-ACETYL-D-GLUCOSAMINE (NAGo)
5p: N-ACETYL-D-GLUCOSAMINE (NAGp)
5q: N-ACETYL-D-GLUCOSAMINE (NAGq)
5r: N-ACETYL-D-GLUCOSAMINE (NAGr)
5s: N-ACETYL-D-GLUCOSAMINE (NAGs)
5t: N-ACETYL-D-GLUCOSAMINE (NAGt)
5u: N-ACETYL-D-GLUCOSAMINE (NAGu)
5v: N-ACETYL-D-GLUCOSAMINE (NAGv)
5w: N-ACETYL-D-GLUCOSAMINE (NAGw)
5x: N-ACETYL-D-GLUCOSAMINE (NAGx)
5y: N-ACETYL-D-GLUCOSAMINE (NAGy)
5z: N-ACETYL-D-GLUCOSAMINE (NAGz)
6a: O-SIALIC ACID (SIAa)
6b: O-SIALIC ACID (SIAb)
6c: O-SIALIC ACID (SIAc)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
13
Ligand/Ion
BETA-D-MANNOSE
2
FUC
7
Ligand/Ion
ALPHA-L-FUCOSE
3
GAL
9
Ligand/Ion
BETA-D-GALACTOSE
4
MAN
31
Ligand/Ion
ALPHA-D-MANNOSE
5
NAG
51
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
6
SIA
3
Ligand/Ion
O-SIALIC ACID
[
close Hetero Component info
]
Sites
(19, 19)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN B:611 , SER B:613 , TYR B:638 , ILE B:641
binding site for Poly-Saccharide residues FUC B 6110 through NAG B 6111 bound to ASN B 611
02
AC2
SOFTWARE
ASN B:637
binding site for Poly-Saccharide residues FUC B 6370 through BMA B 6373 bound to ASN B 637
03
AC3
SOFTWARE
THR B:529 , ASP B:624 , ASN B:625 , GLU G:87 , ASN G:88
binding site for Poly-Saccharide residues FUC G 880 through NAG G 882 bound to ASN G 88
04
AC4
SOFTWARE
ASN G:133 , ASP G:140 , GLY G:152 , ARG G:178 , LYS G:189
binding site for Poly-Saccharide residues NAG G 1330 through BMA G 1332 bound to ASN G 133
05
AC5
SOFTWARE
THR G:135 , ASN G:156 , TYR G:173 , ASP G:321A
binding site for Poly-Saccharide residues FUC G 1560 through GAL G 1572 bound to ASN G 156
06
AC6
SOFTWARE
GLN G:130 , SER G:158 , ASN G:160
binding site for Poly-Saccharide residues FUC G 1600 through GAL G 1609 bound to ASN G 160
07
AC7
SOFTWARE
ASP D:72 , MET D:75 , TYR D:79 , ARG G:192 , ASN G:197 , ARG G:308
binding site for Poly-Saccharide residues NAG G 1970 through NAG G 1978 bound to ASN G 197
08
AC8
SOFTWARE
GLU G:92 , ASN G:234 , THR G:236 , PRO G:238
binding site for Poly-Saccharide residues NAG G 2340 through NAG G 2341 bound to ASN G 234
09
AC9
SOFTWARE
GLU D:1 , GLU G:211 , PRO G:212 , ASN G:262 , GLY G:379 , ILE G:439 , CYS G:445 , VAL G:446 , SER G:447
binding site for Poly-Saccharide residues NAG G 2620 through MAN G 2626 bound to ASN G 262
10
AD1
SOFTWARE
GLY E:29 , ASP E:31 , ASN G:276 , THR G:278 , ASN G:279
binding site for Poly-Saccharide residues FUC G 2760 through NAG G 2775 bound to ASN G 276
11
AD2
SOFTWARE
ASN G:295 , ARG G:444
binding site for Poly-Saccharide residues NAG G 2950 through NAG G 2951 bound to ASN G 295
12
AD3
SOFTWARE
GLN D:105 , ASN G:301 , GLN G:440 , GLY G:441 , GLY L:68 , THR L:69
binding site for Poly-Saccharide residues NAG G 3010 through NAG G 3016 bound to ASN G 301
13
AD4
SOFTWARE
THR G:297 , ASN G:332 , ARG H:96 , ARG H:97 , GLN H:99 , ARG H:100 , ILE H:100A , TYR H:100B , GLY H:100C , VAL H:100D , TYR H:100M , ILE H:195 , ASP H:208 , ARG H:210 , SER L:30 , ASN L:50 , ASN L:51 , GLN L:52 , PRO L:66 , ASP L:66A , ASN L:66C
binding site for Poly-Saccharide residues NAG G 3320 through MAN G 3329 bound to ASN G 332
14
AD5
SOFTWARE
ASN G:339
binding site for Mono-Saccharide NAG G 3390 bound to ASN G 339
15
AD6
SOFTWARE
ASN G:355
binding site for Poly-Saccharide residues NAG G 3550 through NAG G 3551 bound to ASN G 355
16
AD7
SOFTWARE
ARG D:82B , ASN G:363 , ASN G:386 , SER G:388 , NAG G:3860 , NAG G:3861
binding site for Poly-Saccharide residues NAG G 3630 through MAN G 3636 bound to ASN G 363
17
AD8
SOFTWARE
ASN G:386 , SER G:388 , NAG G:3630 , NAG G:3631
binding site for Poly-Saccharide residues NAG G 3860 through MAN G 3864 bound to ASN G 386
18
AD9
SOFTWARE
ASN G:392
binding site for Poly-Saccharide residues FUC G 3920 through MAN G 3925 bound to ASN G 392
19
AE1
SOFTWARE
PRO G:291 , GLN G:293 , ASN G:448 , ARG L:190
binding site for Poly-Saccharide residues NAG G 4480 through MAN G 4484 bound to ASN G 448
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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Exons
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SCOP Domains
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CATH Domains
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Pfam Domains
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