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5T2P
Asym. Unit
Info
Asym.Unit (327 KB)
Biol.Unit 1 (318 KB)
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(1)
Title
:
HEPATITIS B VIRUS CORE PROTEIN Y132A MUTANT IN COMPLEX WITH SULFAMOYLBENZAMIDE (SBA_R01)
Authors
:
Z. Zhou, Z. H. Xu
Date
:
24 Aug 16 (Deposition) - 22 Feb 17 (Release) - 22 Feb 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.69
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C,D,E,F (1x)
Keywords
:
Hepatitis B Virus, Hbv, Core Protein, Capsid, Y132A Dimer, Y132A Hexamer, Sulfamoylbenzamide, Sba_r01, Viral Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Z. Zhou, T. Hu, X. Zhou, S. Wildum, F. Garcia-Alcalde, Z. H. Xu, D. Wu, Y. Mao, X. Tian, Y. Zhou, F. Shen, Z. Zhang, G. Tang, I. Najera, G. Yang, H. C. Shen, J. A. T. Young, N. Qin
Heteroaryldihydropyrimidine (Hap) And Sulfamoylbenzamide (Sba) Inhibit Hepatitis B Virus Replication By Different Molecular Mechanisms
Sci Rep V. 7 42374 2017
[
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Hetero Components
(5, 26)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
1d: CHLORIDE ION (CLd)
1e: CHLORIDE ION (CLe)
2a: DIMETHYL SULFOXIDE (DMSa)
2b: DIMETHYL SULFOXIDE (DMSb)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
3c: GLYCEROL (GOLc)
4a: ISOPROPYL ALCOHOL (IPAa)
4b: ISOPROPYL ALCOHOL (IPAb)
4c: ISOPROPYL ALCOHOL (IPAc)
4d: ISOPROPYL ALCOHOL (IPAd)
4e: ISOPROPYL ALCOHOL (IPAe)
4f: ISOPROPYL ALCOHOL (IPAf)
4g: ISOPROPYL ALCOHOL (IPAg)
4h: ISOPROPYL ALCOHOL (IPAh)
4i: ISOPROPYL ALCOHOL (IPAi)
4j: ISOPROPYL ALCOHOL (IPAj)
5a: 4-FLUORANYL-3-(4-OXIDANYLPIPERIDIN... (K89a)
5b: 4-FLUORANYL-3-(4-OXIDANYLPIPERIDIN... (K89b)
5c: 4-FLUORANYL-3-(4-OXIDANYLPIPERIDIN... (K89c)
5d: 4-FLUORANYL-3-(4-OXIDANYLPIPERIDIN... (K89d)
5e: 4-FLUORANYL-3-(4-OXIDANYLPIPERIDIN... (K89e)
5f: 4-FLUORANYL-3-(4-OXIDANYLPIPERIDIN... (K89f)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
5
Ligand/Ion
CHLORIDE ION
2
DMS
2
Ligand/Ion
DIMETHYL SULFOXIDE
3
GOL
3
Ligand/Ion
GLYCEROL
4
IPA
10
Ligand/Ion
ISOPROPYL ALCOHOL
5
K89
6
Ligand/Ion
4-FLUORANYL-3-(4-OXIDANYLPIPERIDIN-1-YL)SULFONYL-~{N}-[3,4,5-TRIS(FLUORANYL)PHENYL]BENZAMIDE
[
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Sites
(26, 26)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
20: AE2 (SOFTWARE)
21: AE3 (SOFTWARE)
22: AE4 (SOFTWARE)
23: AE5 (SOFTWARE)
24: AE6 (SOFTWARE)
25: AE7 (SOFTWARE)
26: AE8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
PRO A:25 , LEU A:30 , THR A:33 , TRP A:102 , ILE A:105 , SER A:106 , PHE A:110 , TYR A:118 , LEU A:140 , HOH A:339 , TRP D:125 , ARG D:127 , THR D:128 , ALA D:132 , PRO D:134 , HOH D:339
binding site for residue K89 A 201
02
AC2
SOFTWARE
LYS A:96 , LEU A:100 , GLN B:57 , LEU B:60 , CYS B:61 , ASP B:64 , HOH B:325
binding site for residue IPA A 202
03
AC3
SOFTWARE
SER A:17 , LEU A:19 , LEU A:95 , GLN A:99
binding site for residue IPA A 203
04
AC4
SOFTWARE
PRO B:25 , LEU B:30 , THR B:33 , TRP B:102 , ILE B:105 , SER B:106 , TYR B:118 , ILE B:139 , LEU B:140 , HOH B:317 , HOH B:343 , TRP C:125 , ARG C:127 , THR C:128 , PRO C:134 , HOH C:319
binding site for residue K89 B 201
05
AC5
SOFTWARE
ARG B:39 , ASP B:40 , HOH B:362
binding site for residue DMS B 202
06
AC6
SOFTWARE
PRO B:130 , ALA B:131 , ARG B:133 , PRO B:134 , PRO B:135 , PRO E:135 , ASN E:136 , ALA E:137
binding site for residue IPA B 203
07
AC7
SOFTWARE
ASP B:29 , HOH B:315 , HOH B:329 , HOH B:348 , PRO C:20 , ARG C:127 , HOH C:318
binding site for residue GOL B 204
08
AC8
SOFTWARE
PRO C:25 , LEU C:30 , THR C:33 , TRP C:102 , ILE C:105 , SER C:106 , TYR C:118 , ILE C:139 , LEU C:140 , TRP F:125 , ARG F:127 , THR F:128 , PRO F:134 , HOH F:335
binding site for residue K89 C 201
09
AC9
SOFTWARE
PRO B:135 , ASN B:136 , ALA B:137 , PRO C:130 , ALA C:131 , ALA C:132 , ARG C:133
binding site for residue DMS C 202
10
AD1
SOFTWARE
ARG C:39 , ASP C:40
binding site for residue CL C 203
11
AD2
SOFTWARE
ALA C:137 , PRO F:130 , ALA F:131 , ARG F:133
binding site for residue IPA C 204
12
AD3
SOFTWARE
GLN C:57 , LEU C:60 , ASP C:64 , LYS D:96 , LEU D:100
binding site for residue IPA C 205
13
AD4
SOFTWARE
ASP C:29 , HOH C:307 , PRO F:20
binding site for residue IPA C 206
14
AD5
SOFTWARE
PRO D:25 , LEU D:30 , THR D:33 , TRP D:102 , ILE D:105 , SER D:106 , TYR D:118 , ILE D:139 , LEU D:140 , TRP E:125 , ARG E:127 , THR E:128 , PRO E:134 , HOH E:335
binding site for residue K89 D 201
15
AD6
SOFTWARE
ALA D:137 , ARG E:133
binding site for residue CL D 202
16
AD7
SOFTWARE
ARG D:39 , ASP D:40
binding site for residue CL D 203
17
AD8
SOFTWARE
LYS C:96 , LEU C:100 , GLN D:57 , LEU D:60 , ASP D:64
binding site for residue IPA D 204
18
AD9
SOFTWARE
GLU D:117
binding site for residue GOL D 205
19
AE1
SOFTWARE
ASP D:29 , HOH D:306 , PRO E:20 , ARG E:127
binding site for residue GOL D 206
20
AE2
SOFTWARE
VAL B:124 , TRP B:125 , ARG B:127 , THR B:128 , PRO B:134 , HOH B:328 , PRO E:25 , LEU E:30 , THR E:33 , TRP E:102 , ILE E:105 , SER E:106 , PHE E:110 , TYR E:118 , ILE E:139 , LEU E:140 , HOH E:327
binding site for residue K89 E 201
21
AE3
SOFTWARE
ASP E:40
binding site for residue CL E 202
22
AE4
SOFTWARE
GLN E:57 , CYS E:61 , ASP E:64 , LYS F:96 , LEU F:100
binding site for residue IPA E 203
23
AE5
SOFTWARE
PRO B:20 , HOH B:426 , ASP E:29 , HOH E:312
binding site for residue IPA E 204
24
AE6
SOFTWARE
TRP A:125 , ARG A:127 , THR A:128 , PRO A:134 , HOH A:323 , LEU F:30 , THR F:33 , TRP F:102 , ILE F:105 , SER F:106 , PHE F:110 , TYR F:118 , LEU F:140
binding site for residue K89 F 201
25
AE7
SOFTWARE
ASP F:40 , HOH F:357
binding site for residue CL F 202
26
AE8
SOFTWARE
PRO A:130 , ALA A:131 , ARG A:133 , PRO F:135 , ASN F:136 , ALA F:137
binding site for residue IPA F 203
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
Info
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Exons
(0, 0)
Info
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (327 KB)
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