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5T05
Biol. Unit 1
Info
Asym.Unit (257 KB)
Biol.Unit 1 (126 KB)
Biol.Unit 2 (127 KB)
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Title
:
CRYSTAL STRUCTURE OF HEPARAN SULFATE 6-O-SULFOTRANSFERASE WITH BOUND PAP AND IDOA2S CONTAINING HEXASACCHARIDE SUBSTRATE
Authors
:
L. C. Pedersen, A. F. Moon, J. M. Krahn, J. Liu
Date
:
15 Aug 16 (Deposition) - 01 Feb 17 (Release) - 01 Feb 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.95
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Heparan Sulfate, Sulfotransferase, Complex, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Xu, A. F. Moon, S. Xu, J. M. Krahn, J. Liu, L. C. Pedersen
Structure Based Substrate Specificity Analysis Of Heparan Sulfate 6-O-Sulfotransferases.
Acs Chem. Biol. V. 12 73 2017
[
close entry info
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Hetero Components
(8, 23)
Info
All Hetero Components
1a: ADENOSINE-3'-5'-DIPHOSPHATE (A3Pa)
1b: ADENOSINE-3'-5'-DIPHOSPHATE (A3Pb)
2a: BETA-D-GLUCOPYRANURONIC ACID (BDPa)
2b: BETA-D-GLUCOPYRANURONIC ACID (BDPb)
2c: BETA-D-GLUCOPYRANURONIC ACID (BDPc)
2d: BETA-D-GLUCOPYRANURONIC ACID (BDPd)
3a: CHLORIDE ION (CLa)
3b: CHLORIDE ION (CLb)
3c: CHLORIDE ION (CLc)
3d: CHLORIDE ION (CLd)
4a: 1,2-ETHANEDIOL (EDOa)
4b: 1,2-ETHANEDIOL (EDOb)
4c: 1,2-ETHANEDIOL (EDOc)
4d: 1,2-ETHANEDIOL (EDOd)
4e: 1,2-ETHANEDIOL (EDOe)
4f: 1,2-ETHANEDIOL (EDOf)
4g: 1,2-ETHANEDIOL (EDOg)
4h: 1,2-ETHANEDIOL (EDOh)
4i: 1,2-ETHANEDIOL (EDOi)
4j: 1,2-ETHANEDIOL (EDOj)
4k: 1,2-ETHANEDIOL (EDOk)
4l: 1,2-ETHANEDIOL (EDOl)
4m: 1,2-ETHANEDIOL (EDOm)
4n: 1,2-ETHANEDIOL (EDOn)
4o: 1,2-ETHANEDIOL (EDOo)
5a: ALPHA-D-GLUCOSE (GLCa)
5b: ALPHA-D-GLUCOSE (GLCb)
5c: ALPHA-D-GLUCOSE (GLCc)
5d: ALPHA-D-GLUCOSE (GLCd)
5e: ALPHA-D-GLUCOSE (GLCe)
5f: ALPHA-D-GLUCOSE (GLCf)
5g: ALPHA-D-GLUCOSE (GLCg)
5h: ALPHA-D-GLUCOSE (GLCh)
6a: N-SULFO-ALPHA-D-GLUCOSAMINE (GNSa)
6b: N-SULFO-ALPHA-D-GLUCOSAMINE (GNSb)
6c: N-SULFO-ALPHA-D-GLUCOSAMINE (GNSc)
6d: N-SULFO-ALPHA-D-GLUCOSAMINE (GNSd)
6e: N-SULFO-ALPHA-D-GLUCOSAMINE (GNSe)
6f: N-SULFO-ALPHA-D-GLUCOSAMINE (GNSf)
7a: 2-O-SULFO-ALPHA-L-IDOPYRANURONIC A... (IDSa)
7b: 2-O-SULFO-ALPHA-L-IDOPYRANURONIC A... (IDSb)
8a: SODIUM ION (NAa)
8b: SODIUM ION (NAb)
8c: SODIUM ION (NAc)
8d: SODIUM ION (NAd)
8e: SODIUM ION (NAe)
8f: SODIUM ION (NAf)
8g: SODIUM ION (NAg)
9a: P-NITROPHENOL (NPOa)
9b: P-NITROPHENOL (NPOb)
10a: L(+)-TARTARIC ACID (TLAa)
10b: L(+)-TARTARIC ACID (TLAb)
10c: L(+)-TARTARIC ACID (TLAc)
10d: L(+)-TARTARIC ACID (TLAd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
A3P
1
Ligand/Ion
ADENOSINE-3'-5'-DIPHOSPHATE
2
BDP
2
Ligand/Ion
BETA-D-GLUCOPYRANURONIC ACID
3
CL
-1
Ligand/Ion
CHLORIDE ION
4
EDO
9
Ligand/Ion
1,2-ETHANEDIOL
5
GLC
4
Ligand/Ion
ALPHA-D-GLUCOSE
6
GNS
3
Ligand/Ion
N-SULFO-ALPHA-D-GLUCOSAMINE
7
IDS
1
Ligand/Ion
2-O-SULFO-ALPHA-L-IDOPYRANURONIC ACID
8
NA
-1
Ligand/Ion
SODIUM ION
9
NPO
1
Ligand/Ion
P-NITROPHENOL
10
TLA
2
Ligand/Ion
L(+)-TARTARIC ACID
[
close Hetero Component info
]
Sites
(25, 25)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
20: AE2 (SOFTWARE)
21: AE6 (SOFTWARE)
22: AE7 (SOFTWARE)
23: AF6 (SOFTWARE)
24: AF7 (SOFTWARE)
25: AF8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:1101 , LYS A:1104 , THR A:1105 , GLY A:1106 , GLY A:1107 , THR A:1108 , THR A:1109 , ARG A:1191 , SER A:1199 , THR A:1300 , GLN A:1303 , THR A:1323 , ILE A:1325 , THR A:1328 , ARG A:1329 , ALA A:1330 , EDO A:1420 , HOH A:1636 , HOH A:1714 , HOH A:1715 , HOH A:1721 , HOH A:1811 , HOH A:1915
binding site for residue A3P A 1401
02
AC2
SOFTWARE
VAL A:35 , THR A:36 , VAL A:37 , BDP A:1407 , NPO A:1408 , HOH A:1734 , HOH A:1827
binding site for residue EDO A 1413
03
AC3
SOFTWARE
ARG A:354 , HOH A:1779 , LEU B:1227 , SER B:1249 , EDO B:1415 , HOH B:1647
binding site for residue EDO A 1414
04
AC4
SOFTWARE
ARG A:1116 , GLN A:1130 , LYS A:1131 , CYS A:1133
binding site for residue EDO A 1415
05
AC5
SOFTWARE
ARG A:1191 , THR A:1328 , HOH A:1524 , HOH A:1593
binding site for residue EDO A 1416
06
AC6
SOFTWARE
ARG A:1258 , CYS A:1268 , TYR A:1269 , ARG A:1279 , HOH A:1534
binding site for residue EDO A 1417
07
AC7
SOFTWARE
TYR A:17 , ASN A:18 , ASP A:296 , LYS A:297
binding site for residue EDO A 1418
08
AC8
SOFTWARE
TYR A:176 , MET A:330 , PRO A:331 , ASN A:332 , HOH A:1730 , HOH A:1885
binding site for residue EDO A 1419
09
AC9
SOFTWARE
ARG A:1329 , A3P A:1401 , NA A:1427 , HOH A:1715
binding site for residue EDO A 1420
10
AD1
SOFTWARE
PRO A:1281 , LEU A:1349 , GLN A:1352 , GLU B:1278
binding site for residue EDO A 1421
11
AD2
SOFTWARE
PHE A:1302 , ARG A:1304 , LYS A:1305 , HOH A:1644
binding site for residue CL A 1422
12
AD3
SOFTWARE
LYS A:1132 , TRP A:1153 , GNS A:1404 , HOH A:1972
binding site for residue CL A 1423
13
AD4
SOFTWARE
HIS A:1315 , ARG A:1317 , HOH A:1794
binding site for residue CL A 1424
14
AD5
SOFTWARE
ASN A:1232 , ASP A:1235 , HOH A:1883 , HOH A:1920 , HOH A:1954 , HOH A:1990
binding site for residue NA A 1425
15
AD6
SOFTWARE
GNS A:1404 , IDS A:1405 , HOH A:1850 , HOH A:1923 , HOH A:1964
binding site for residue NA A 1426
16
AD7
SOFTWARE
LYS A:1104 , HIS A:1203 , ARG A:1206 , EDO A:1420 , TLA A:1430 , HOH A:1811
binding site for residue NA A 1427
17
AD8
SOFTWARE
BDP A:1403 , TLA A:1430
binding site for residue NA A 1428
18
AD9
SOFTWARE
ALA A:1331 , VAL A:1333 , HOH A:1928 , HOH A:1935
binding site for residue NA A 1429
19
AE1
SOFTWARE
HIS A:1203 , ARG A:1206 , GNS A:1402 , NA A:1427 , NA A:1428 , HOH A:1786 , HOH A:1925
binding site for residue TLA A 1430
20
AE2
SOFTWARE
SER A:270 , PRO A:271 , ASN A:272 , LYS A:273 , GLU A:274 , HOH A:1501 , HOH A:1656
binding site for residue TLA A 1431
21
AE6
SOFTWARE
EDO A:1414 , ARG B:1258 , CYS B:1268 , TYR B:1269 , ARG B:1279 , HOH B:1610 , HOH B:1723
binding site for residue EDO B 1415
22
AE7
SOFTWARE
HOH A:1577 , LYS B:1292 , PHE B:1356 , HOH B:1540 , HOH B:1665
binding site for residue EDO B 1416
23
AF6
SOFTWARE
TYR A:17 , ASN A:18 , ALA A:21 , VAL A:37 , GLU A:38 , HIS A:39 , LYS A:1131 , LYS A:1132 , ARG A:1148 , TRP A:1153 , LEU A:1157 , HIS A:1158 , HIS A:1203 , ALA A:1208 , THR A:1209 , TRP A:1210 , EDO A:1413 , CL A:1423 , NA A:1426 , NA A:1428 , TLA A:1430 , HOH A:1525 , HOH A:1570 , HOH A:1649 , HOH A:1699 , HOH A:1702 , HOH A:1714 , HOH A:1720 , HOH A:1734 , HOH A:1842 , HOH A:1850 , HOH A:1896 , HOH A:1923 , HOH A:1927 , HOH A:1931
binding site for Poly-Saccharide residues GNS A 1402 through NPO A 1408
24
AF7
SOFTWARE
ASP A:14 , LYS A:15 , TYR A:17 , ASN A:18 , ALA A:21 , VAL A:37 , GLU A:38 , HIS A:39 , GLU A:44 , GLU A:45 , TRP A:62 , ALA A:63 , ASP A:65 , ARG A:66 , GLU A:111 , GLU A:153 , PRO A:154 , TYR A:155 , TRP A:230 , TRP A:340 , TYR A:341 , ARG A:344 , LYS A:1131 , LYS A:1132 , ARG A:1148 , TRP A:1153 , LEU A:1157 , GNS A:1402 , EDO A:1413 , CL A:1423 , NA A:1426 , NA A:1428 , HOH A:1506 , HOH A:1525 , HOH A:1530 , HOH A:1553 , HOH A:1570 , HOH A:1691 , HOH A:1699 , HOH A:1705 , HOH A:1720 , HOH A:1734 , HOH A:1774 , HOH A:1839 , HOH A:1842 , HOH A:1850 , HOH A:1923 , HOH A:1931
binding site for Poly-Saccharide residues GLC A 1409 through GLC A 1412
25
AF8
SOFTWARE
ASP A:14 , LYS A:15 , TYR A:17 , ASN A:18 , ALA A:21 , VAL A:37 , GLU A:38 , HIS A:39 , GLU A:44 , GLU A:45 , TRP A:62 , ALA A:63 , ASP A:65 , ARG A:66 , GLU A:111 , GLU A:153 , PRO A:154 , TYR A:155 , TRP A:230 , TRP A:340 , TYR A:341 , ARG A:344 , LYS A:1131 , LYS A:1132 , ARG A:1148 , TRP A:1153 , LEU A:1157 , HIS A:1158 , HIS A:1203 , ALA A:1208 , THR A:1209 , TRP A:1210 , GLC A:1409 , EDO A:1413 , CL A:1423 , NA A:1426 , NA A:1428 , TLA A:1430 , HOH A:1525 , HOH A:1530 , HOH A:1553 , HOH A:1570 , HOH A:1649 , HOH A:1691 , HOH A:1699 , HOH A:1702 , HOH A:1705 , HOH A:1714 , HOH A:1720 , HOH A:1734 , HOH A:1774 , HOH A:1839 , HOH A:1842 , HOH A:1850 , HOH A:1896 , HOH A:1923 , HOH A:1927 , HOH A:1931 , ASP B:14 , LYS B:15 , GLU B:44 , TRP B:62 , ALA B:63 , ASP B:65 , ARG B:66 , PHE B:92 , GLU B:111 , GLU B:153 , PRO B:154 , TYR B:155 , TRP B:230 , MET B:321 , TRP B:340 , TYR B:341 , ARG B:344 , LYS B:1131 , LYS B:1132 , ARG B:1148 , GLY B:1152 , TRP B:1153 , LEU B:1157 , HIS B:1158 , HIS B:1203 , ALA B:1208 , THR B:1209 , TRP B:1210 , GLC B:1409 , EDO B:1417 , TLA B:1422 , HOH B:1510 , HOH B:1521 , HOH B:1544 , HOH B:1573 , HOH B:1577 , HOH B:1584 , HOH B:1596 , HOH B:1601 , HOH B:1652 , HOH B:1653 , HOH B:1678 , HOH B:1697 , HOH B:1728 , HOH B:1777 , HOH B:1786 , HOH B:1800 , HOH B:1856 , HOH B:1886 , HOH B:1891
binding site for Poly-Saccharide residues GNS B 1402 through NPO B 1408
[
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(0, 0)
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Asym.Unit (257 KB)
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