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5T03
Biol. Unit 2
Info
Asym.Unit (478 KB)
Biol.Unit 1 (234 KB)
Biol.Unit 2 (237 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HEPARAN SULFATE 6-O-SULFOTRANSFERASE WITH BOUND PAP AND GLUCURONIC ACID CONTAINING HEXASACCHARIDE SUBSTRATE
Authors
:
L. C. Pedersen, A. F. Moon, J. M. Krahn, J. Liu
Date
:
15 Aug 16 (Deposition) - 01 Feb 17 (Release) - 01 Feb 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Heparan Sulfate, Sulfotransferase, Complex, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Xu, A. F. Moon, S. Xu, J. M. Krahn, J. Liu, L. C. Pedersen
Structure Based Substrate Specificity Analysis Of Heparan Sulfate 6-O-Sulfotransferases.
Acs Chem. Biol. V. 12 73 2017
[
close entry info
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Hetero Components
(7, 19)
Info
All Hetero Components
1a: ADENOSINE-3'-5'-DIPHOSPHATE (A3Pa)
1b: ADENOSINE-3'-5'-DIPHOSPHATE (A3Pb)
2a: BETA-D-GLUCOPYRANURONIC ACID (BDPa)
2b: BETA-D-GLUCOPYRANURONIC ACID (BDPb)
2c: BETA-D-GLUCOPYRANURONIC ACID (BDPc)
2d: BETA-D-GLUCOPYRANURONIC ACID (BDPd)
2e: BETA-D-GLUCOPYRANURONIC ACID (BDPe)
2f: BETA-D-GLUCOPYRANURONIC ACID (BDPf)
3a: CHLORIDE ION (CLa)
3b: CHLORIDE ION (CLb)
3c: CHLORIDE ION (CLc)
3d: CHLORIDE ION (CLd)
3e: CHLORIDE ION (CLe)
4a: 1,2-ETHANEDIOL (EDOa)
4b: 1,2-ETHANEDIOL (EDOb)
4c: 1,2-ETHANEDIOL (EDOc)
4d: 1,2-ETHANEDIOL (EDOd)
4e: 1,2-ETHANEDIOL (EDOe)
4f: 1,2-ETHANEDIOL (EDOf)
4g: 1,2-ETHANEDIOL (EDOg)
4h: 1,2-ETHANEDIOL (EDOh)
4i: 1,2-ETHANEDIOL (EDOi)
4j: 1,2-ETHANEDIOL (EDOj)
4k: 1,2-ETHANEDIOL (EDOk)
4l: 1,2-ETHANEDIOL (EDOl)
4m: 1,2-ETHANEDIOL (EDOm)
4n: 1,2-ETHANEDIOL (EDOn)
4o: 1,2-ETHANEDIOL (EDOo)
4p: 1,2-ETHANEDIOL (EDOp)
5a: ALPHA-D-GLUCOSE (GLCa)
5b: ALPHA-D-GLUCOSE (GLCb)
5c: ALPHA-D-GLUCOSE (GLCc)
5d: ALPHA-D-GLUCOSE (GLCd)
5e: ALPHA-D-GLUCOSE (GLCe)
5f: ALPHA-D-GLUCOSE (GLCf)
5g: ALPHA-D-GLUCOSE (GLCg)
5h: ALPHA-D-GLUCOSE (GLCh)
6a: N-SULFO-ALPHA-D-GLUCOSAMINE (GNSa)
6b: N-SULFO-ALPHA-D-GLUCOSAMINE (GNSb)
6c: N-SULFO-ALPHA-D-GLUCOSAMINE (GNSc)
6d: N-SULFO-ALPHA-D-GLUCOSAMINE (GNSd)
6e: N-SULFO-ALPHA-D-GLUCOSAMINE (GNSe)
6f: N-SULFO-ALPHA-D-GLUCOSAMINE (GNSf)
7a: SODIUM ION (NAa)
7b: SODIUM ION (NAb)
7c: SODIUM ION (NAc)
7d: SODIUM ION (NAd)
7e: SODIUM ION (NAe)
7f: SODIUM ION (NAf)
8a: P-NITROPHENOL (NPOa)
8b: P-NITROPHENOL (NPOb)
9a: L(+)-TARTARIC ACID (TLAa)
9b: L(+)-TARTARIC ACID (TLAb)
9c: L(+)-TARTARIC ACID (TLAc)
9d: L(+)-TARTARIC ACID (TLAd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
A3P
1
Ligand/Ion
ADENOSINE-3'-5'-DIPHOSPHATE
2
BDP
3
Ligand/Ion
BETA-D-GLUCOPYRANURONIC ACID
3
CL
-1
Ligand/Ion
CHLORIDE ION
4
EDO
5
Ligand/Ion
1,2-ETHANEDIOL
5
GLC
4
Ligand/Ion
ALPHA-D-GLUCOSE
6
GNS
3
Ligand/Ion
N-SULFO-ALPHA-D-GLUCOSAMINE
7
NA
-1
Ligand/Ion
SODIUM ION
8
NPO
1
Ligand/Ion
P-NITROPHENOL
9
TLA
2
Ligand/Ion
L(+)-TARTARIC ACID
[
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]
Sites
(16, 16)
Info
All Sites
01: AC3 (SOFTWARE)
02: AD1 (SOFTWARE)
03: AE4 (SOFTWARE)
04: AE5 (SOFTWARE)
05: AE6 (SOFTWARE)
06: AE7 (SOFTWARE)
07: AE8 (SOFTWARE)
08: AE9 (SOFTWARE)
09: AF1 (SOFTWARE)
10: AF2 (SOFTWARE)
11: AF3 (SOFTWARE)
12: AF4 (SOFTWARE)
13: AF5 (SOFTWARE)
14: AF6 (SOFTWARE)
15: AF9 (SOFTWARE)
16: AG1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC3
SOFTWARE
ARG A:354 , LEU B:1227 , SER B:1249 , EDO B:1415
binding site for residue EDO A 1414
02
AD1
SOFTWARE
LEU A:1349 , GLN A:1352 , GLU B:1278
binding site for residue EDO A 1421
03
AE4
SOFTWARE
HIS B:1101 , LYS B:1104 , THR B:1105 , GLY B:1106 , GLY B:1107 , THR B:1108 , THR B:1109 , ARG B:1191 , SER B:1199 , THR B:1300 , GLN B:1303 , THR B:1323 , GLN B:1324 , ILE B:1325 , THR B:1328 , ARG B:1329 , ALA B:1330 , TLA B:1423 , HOH B:1562 , HOH B:1609 , HOH B:1617 , HOH B:1622 , HOH B:1633 , HOH B:1643 , HOH B:1723 , HOH B:1765
binding site for residue A3P B 1401
04
AE5
SOFTWARE
ARG B:1191 , THR B:1328 , HOH B:1558 , HOH B:1616
binding site for residue EDO B 1413
05
AE6
SOFTWARE
TYR B:176 , MET B:330 , PRO B:331 , ASN B:332 , HOH B:1527
binding site for residue EDO B 1414
06
AE7
SOFTWARE
EDO A:1414 , ARG B:1258 , TYR B:1269 , ARG B:1279 , HOH B:1576 , HOH B:1745
binding site for residue EDO B 1415
07
AE8
SOFTWARE
SER A:1264 , LYS B:1292 , HOH B:1507 , HOH B:1540 , HOH B:1553
binding site for residue EDO B 1416
08
AE9
SOFTWARE
GLU A:1278 , ASN B:1280 , PRO B:1281 , LEU B:1349 , GLN B:1352
binding site for residue EDO B 1417
09
AF1
SOFTWARE
GLU B:1276
binding site for residue CL B 1418
10
AF2
SOFTWARE
PHE B:1302 , GLN B:1303 , ARG B:1304 , LYS B:1305 , HOH B:1613
binding site for residue CL B 1419
11
AF3
SOFTWARE
ASN B:1232 , ASP B:1235 , HOH B:1851 , HOH B:1864 , HOH B:1880 , HOH B:1889
binding site for residue NA B 1420
12
AF4
SOFTWARE
TLA B:1422 , HOH B:1878
binding site for residue NA B 1421
13
AF5
SOFTWARE
HIS B:1203 , ARG B:1206 , GNS B:1402 , NA B:1421 , HOH B:1529 , HOH B:1556 , HOH B:1754 , HOH B:1761
binding site for residue TLA B 1422
14
AF6
SOFTWARE
THR B:1108 , THR B:1109 , ARG B:1112 , A3P B:1401 , HOH B:1529 , HOH B:1562 , HOH B:1609 , HOH B:1643
binding site for residue TLA B 1423
15
AF9
SOFTWARE
ASN A:12 , ASP A:14 , LYS A:15 , TYR A:17 , ASN A:18 , ALA A:21 , VAL A:37 , GLU A:38 , HIS A:39 , GLU A:44 , GLU A:45 , TRP A:62 , ALA A:63 , ASP A:65 , ARG A:66 , GLU A:111 , GLU A:153 , PRO A:154 , TYR A:155 , TRP A:230 , TRP A:340 , TYR A:341 , ARG A:344 , LYS A:1131 , LYS A:1132 , ARG A:1148 , TRP A:1153 , LEU A:1157 , HIS A:1158 , HIS A:1203 , ALA A:1208 , THR A:1209 , TRP A:1210 , GLC A:1409 , EDO A:1413 , CL A:1425 , NA A:1429 , TLA A:1431 , HOH A:1505 , HOH A:1522 , HOH A:1546 , HOH A:1578 , HOH A:1580 , HOH A:1601 , HOH A:1605 , HOH A:1624 , HOH A:1644 , HOH A:1653 , HOH A:1660 , HOH A:1677 , HOH A:1717 , HOH A:1759 , HOH A:1760 , HOH A:1767 , HOH A:1817 , ASN B:12 , ASP B:14 , LYS B:15 , GLU B:44 , TRP B:62 , ALA B:63 , ASP B:65 , ARG B:66 , PHE B:92 , GLU B:111 , GLU B:153 , PRO B:154 , TYR B:155 , TRP B:230 , MET B:321 , ALA B:324 , ILE B:329 , TRP B:340 , ARG B:344 , LYS B:1131 , LYS B:1132 , ARG B:1148 , GLY B:1152 , TRP B:1153 , LEU B:1157 , HIS B:1158 , HIS B:1203 , ALA B:1208 , THR B:1209 , TRP B:1210 , GLC B:1409 , TLA B:1422 , HOH B:1506 , HOH B:1536 , HOH B:1556 , HOH B:1560 , HOH B:1574 , HOH B:1588 , HOH B:1611 , HOH B:1620 , HOH B:1622 , HOH B:1686 , HOH B:1765 , HOH B:1766 , HOH B:1789 , HOH B:1796 , HOH B:1803 , HOH B:1806 , HOH B:1837 , HOH B:1839
binding site for Poly-Saccharide residues GNS B 1402 through NPO B 1408
16
AG1
SOFTWARE
ASN B:12 , ASP B:14 , LYS B:15 , LYS B:42 , GLU B:44 , GLU B:45 , TRP B:62 , ALA B:63 , ASP B:65 , ARG B:66 , PHE B:92 , GLU B:111 , GLU B:153 , PRO B:154 , TYR B:155 , TRP B:230 , MET B:321 , ALA B:324 , ILE B:329 , TRP B:340 , TYR B:341 , ARG B:344 , LYS B:1131 , LYS B:1132 , ARG B:1148 , GLY B:1152 , TRP B:1153 , LEU B:1157 , GNS B:1402 , HOH B:1506 , HOH B:1536 , HOH B:1555 , HOH B:1556 , HOH B:1560 , HOH B:1574 , HOH B:1611 , HOH B:1686 , HOH B:1766 , HOH B:1789 , HOH B:1796 , HOH B:1806 , HOH B:1839
binding site for Poly-Saccharide residues GLC B 1409 through GLC B 1412
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(0, 0)
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Asymmetric Unit 1
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