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5SZD
Biol. Unit 1
Info
Asym.Unit (340 KB)
Biol.Unit 1 (166 KB)
Biol.Unit 2 (171 KB)
Biol.Unit 3 (333 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF AQUIFEX AEOLICUS HFQ AT 1.5A
Authors
:
K. Stanek, J. Patterson, P. S. Randolph, C. Mura
Date
:
13 Aug 16 (Deposition) - 19 Apr 17 (Release) - 19 Apr 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.49
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A,B,C,D,E,F (1x)
Biol. Unit 2: G,H,I,J,K,L (1x)
Biol. Unit 3: A,B,C,D,E,F,G,H,I,J,K,L (1x)
Keywords
:
Hfq, Aquifex, Rna-Binding, Rna Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. A. Stanek, J. Patterson-West, P. S. Randolph, C. Mura
Crystal Structure And Rna-Binding Properties Of An Hfq Homolog From The Deep-Branching Aquificae: Conservation Of The Lateral Rna-Binding Mode.
Acta Crystallogr D Struct V. 73 294 2017 Biol
[
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Hetero Components
(3, 18)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
1d: CHLORIDE ION (CLd)
1e: CHLORIDE ION (CLe)
1f: CHLORIDE ION (CLf)
1g: CHLORIDE ION (CLg)
2a: GUANIDINE (GAIa)
2b: GUANIDINE (GAIb)
2c: GUANIDINE (GAIc)
2d: GUANIDINE (GAId)
2e: GUANIDINE (GAIe)
2f: GUANIDINE (GAIf)
2g: GUANIDINE (GAIg)
2h: GUANIDINE (GAIh)
3a: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDa)
3b: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDb)
3c: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDc)
3d: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDd)
3e: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDe)
3f: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDf)
3g: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDg)
3h: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDh)
3i: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDi)
3j: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDj)
3k: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDk)
3l: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDl)
4a: (4R)-2-METHYLPENTANE-2,4-DIOL (MRDa)
4b: (4R)-2-METHYLPENTANE-2,4-DIOL (MRDb)
4c: (4R)-2-METHYLPENTANE-2,4-DIOL (MRDc)
4d: (4R)-2-METHYLPENTANE-2,4-DIOL (MRDd)
4e: (4R)-2-METHYLPENTANE-2,4-DIOL (MRDe)
4f: (4R)-2-METHYLPENTANE-2,4-DIOL (MRDf)
4g: (4R)-2-METHYLPENTANE-2,4-DIOL (MRDg)
4h: (4R)-2-METHYLPENTANE-2,4-DIOL (MRDh)
4i: (4R)-2-METHYLPENTANE-2,4-DIOL (MRDi)
4j: (4R)-2-METHYLPENTANE-2,4-DIOL (MRDj)
4k: (4R)-2-METHYLPENTANE-2,4-DIOL (MRDk)
4l: (4R)-2-METHYLPENTANE-2,4-DIOL (MRDl)
4m: (4R)-2-METHYLPENTANE-2,4-DIOL (MRDm)
5a: DI(HYDROXYETHYL)ETHER (PEGa)
5b: DI(HYDROXYETHYL)ETHER (PEGb)
5c: DI(HYDROXYETHYL)ETHER (PEGc)
5d: DI(HYDROXYETHYL)ETHER (PEGd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
-1
Ligand/Ion
CHLORIDE ION
2
GAI
6
Ligand/Ion
GUANIDINE
3
MPD
5
Ligand/Ion
(4S)-2-METHYL-2,4-PENTANEDIOL
4
MRD
7
Ligand/Ion
(4R)-2-METHYLPENTANE-2,4-DIOL
5
PEG
-1
Ligand/Ion
DI(HYDROXYETHYL)ETHER
[
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]
Sites
(26, 26)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
20: AE4 (SOFTWARE)
21: AE5 (SOFTWARE)
22: AF1 (SOFTWARE)
23: AF5 (SOFTWARE)
24: AF8 (SOFTWARE)
25: AG3 (SOFTWARE)
26: AG7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
PHE A:43 , TYR A:57 , HIS A:59 , HOH A:215 , GLN B:9 , LEU B:42
binding site for residue MRD A 101
02
AC2
SOFTWARE
HIS A:3 , GLN F:9 , GLU F:10 , PHE F:40 , ASP F:41 , LEU F:42 , LYS F:58
binding site for residue MRD A 102
03
AC3
SOFTWARE
GLN A:9 , PHE A:40 , ASP A:41 , LEU A:42 , LYS A:58
binding site for residue MPD A 103
04
AC4
SOFTWARE
ASN A:29 , GLY A:30 , LEU I:42 , TYR J:6
binding site for residue GAI A 104
05
AC5
SOFTWARE
TYR A:6
binding site for residue GAI A 105
06
AC6
SOFTWARE
PHE B:43 , TYR B:57 , HIS B:59 , HOH B:219 , GLN C:9 , LEU C:42
binding site for residue MRD B 101
07
AC7
SOFTWARE
GLN B:9 , GLU B:10 , PHE B:40 , ASP B:41 , LEU B:42 , LYS B:58 , PRO C:5
binding site for residue MPD B 102
08
AC8
SOFTWARE
ASN B:29 , GLY B:30 , TYR K:6
binding site for residue GAI B 103
09
AC9
SOFTWARE
PHE C:43 , TYR C:57 , HIS C:59 , HOH C:218 , GLN D:9 , LEU D:42
binding site for residue MRD C 101
10
AD1
SOFTWARE
GLN C:9 , GLU C:10 , PHE C:40 , ASP C:41 , LEU C:42 , LYS C:58
binding site for residue MPD C 102
11
AD2
SOFTWARE
ASN C:29 , GLY C:30 , LEU K:42 , TYR L:6
binding site for residue GAI C 103
12
AD3
SOFTWARE
PHE D:43 , TYR D:57 , HIS D:59 , HOH D:213 , GLN E:9 , LEU E:42
binding site for residue MRD D 101
13
AD4
SOFTWARE
GLN D:9 , GLU D:10 , PHE D:40 , ASP D:41 , LEU D:42 , LYS D:58
binding site for residue MPD D 102
14
AD5
SOFTWARE
PHE E:43 , TYR E:57 , HIS E:59 , HOH E:216 , GLN F:9 , LEU F:42
binding site for residue MRD E 101
15
AD6
SOFTWARE
GLN E:9 , GLU E:10 , PHE E:40 , ASP E:41 , LEU E:42 , LYS E:58 , HOH E:207
binding site for residue MPD E 102
16
AD7
SOFTWARE
ASN E:29 , GLY E:30 , HOH E:222 , TYR H:6
binding site for residue GAI E 103
17
AD8
SOFTWARE
GLN A:9 , LEU A:42 , PHE F:43 , TYR F:57 , HIS F:59 , HOH F:216
binding site for residue MRD F 101
18
AD9
SOFTWARE
MET F:4 , PRO F:5 , TYR F:6 , LYS F:7 , HOH F:201
binding site for residue CL F 102
19
AE1
SOFTWARE
ASN F:29 , GLY F:30 , HOH F:206 , LEU H:42 , TYR I:6
binding site for residue GAI F 103
20
AE4
SOFTWARE
HOH D:207 , HOH D:217 , MET G:4 , TYR G:6 , HOH G:215
binding site for residue CL G 103
21
AE5
SOFTWARE
ASN D:29 , GLY D:30 , HOH D:216 , TYR G:6
binding site for residue GAI G 104
22
AF1
SOFTWARE
HOH E:210 , HOH E:214 , MET H:4 , TYR H:6 , HOH H:202
binding site for residue CL H 104
23
AF5
SOFTWARE
HOH F:208 , HOH F:214 , MET I:4 , TYR I:6 , HOH I:209
binding site for residue CL I 103
24
AF8
SOFTWARE
HOH A:207 , HOH A:214 , MET J:4 , TYR J:6 , LYS J:7 , HOH J:206
binding site for residue CL J 103
25
AG3
SOFTWARE
HOH B:213 , HOH B:216 , MET K:4 , TYR K:6 , LYS K:7 , HOH K:207
binding site for residue CL K 103
26
AG7
SOFTWARE
HOH C:207 , HOH C:215 , MET L:4 , TYR L:6 , LYS L:7 , HOH L:213
binding site for residue CL L 103
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
(, 0)
Info
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(0, 0)
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CATH Domains
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Pfam Domains
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Sorry, no Info available
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Asymmetric Unit 1
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Asym.Unit (340 KB)
Header - Asym.Unit
Biol.Unit 1 (166 KB)
Header - Biol.Unit 1
Biol.Unit 2 (171 KB)
Header - Biol.Unit 2
Biol.Unit 3 (333 KB)
Header - Biol.Unit 3
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