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5SYJ
Asym. Unit
Info
Asym.Unit (478 KB)
Biol.Unit 1 (470 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE D141A VARIANT OF B. PSEUDOMALLEI KATGIN COMPLEX WITH ISONIAZID
Authors
:
P. C. Loewen
Date
:
11 Aug 16 (Deposition) - 21 Sep 16 (Release) - 21 Sep 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.88
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Katg, Catalase-Peroxidase, Oxidoreductase, Isoniazid
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. Vidossich, P. C. Loewen, X. Carpena, G. Fiorin, I. Fita, C. Rovira
Binding Of The Antitubercular Pro-Drug Isoniazid In The Hem Access Channel Of Catalase-Peroxidase (Katg). A Combined Structural And Metadynamics Investigation.
J Phys Chem B V. 118 2924 2014
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Hetero Components
(6, 20)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
2a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
2b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
3a: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDa)
3b: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDb)
3c: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDc)
3d: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDd)
3e: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDe)
3f: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDf)
3g: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDg)
3h: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDh)
4a: SODIUM ION (NAa)
4b: SODIUM ION (NAb)
5a: PYRIDINE-4-CARBOHYDRAZIDE (NIZa)
5b: PYRIDINE-4-CARBOHYDRAZIDE (NIZb)
5c: PYRIDINE-4-CARBOHYDRAZIDE (NIZc)
5d: PYRIDINE-4-CARBOHYDRAZIDE (NIZd)
6a: PHOSPHATE ION (PO4a)
6b: PHOSPHATE ION (PO4b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
2
Ligand/Ion
CHLORIDE ION
2
HEM
2
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
3
MPD
8
Ligand/Ion
(4S)-2-METHYL-2,4-PENTANEDIOL
4
NA
2
Ligand/Ion
SODIUM ION
5
NIZ
4
Ligand/Ion
PYRIDINE-4-CARBOHYDRAZIDE
6
PO4
2
Ligand/Ion
PHOSPHATE ION
[
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Sites
(20, 20)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
20: AE2 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLY A:104 , LEU A:105 , TRP A:111 , VAL A:239 , LEU A:274 , ILE A:275 , GLY A:278 , HIS A:279 , GLY A:282 , LYS A:283 , THR A:284 , HIS A:285 , THR A:323 , SER A:324 , TRP A:330 , THR A:388 , TRP A:420 , NIZ A:810 , HOH A:924 , HOH A:976 , HOH A:990
binding site for residue HEM A 801
02
AC2
SOFTWARE
GLY A:122 , ARG A:123 , GLY A:124 , SER A:494 , HOH A:1148 , HOH A:1368
binding site for residue NA A 802
03
AC3
SOFTWARE
GLY A:124 , GLU A:198 , VAL A:200 , NIZ A:809 , HOH A:1368
binding site for residue CL A 803
04
AC4
SOFTWARE
PRO A:154 , LYS A:158 , HOH A:1266
binding site for residue MPD A 804
05
AC5
SOFTWARE
LEU A:209 , VAL A:293 , THR A:323
binding site for residue MPD A 805
06
AC6
SOFTWARE
TYR A:719 , ASP A:731 , HOH A:1012 , MET B:62 , HOH B:916
binding site for residue MPD A 806
07
AC7
SOFTWARE
LYS A:380 , HIS A:381 , ARG A:382
binding site for residue PO4 A 807
08
AC8
SOFTWARE
ASP A:663 , ASN A:667
binding site for residue MPD A 808
09
AC9
SOFTWARE
ARG A:123 , GLU A:128 , GLU A:198 , ASP A:199 , VAL A:200 , GLY A:493 , SER A:494 , GLN A:622 , THR A:625 , CL A:803 , HOH A:949
binding site for residue NIZ A 809
10
AD1
SOFTWARE
ARG A:108 , TRP A:111 , HIS A:112 , ALA A:141 , HEM A:801 , HOH A:956 , HOH A:1059
binding site for residue NIZ A 810
11
AD2
SOFTWARE
GLY B:104 , LEU B:105 , TRP B:111 , VAL B:239 , LEU B:274 , ILE B:275 , GLY B:278 , HIS B:279 , GLY B:282 , LYS B:283 , THR B:284 , HIS B:285 , THR B:323 , SER B:324 , TRP B:330 , THR B:388 , TRP B:420 , NIZ B:810 , HOH B:940 , HOH B:963 , HOH B:1074
binding site for residue HEM B 801
12
AD3
SOFTWARE
GLY B:122 , ARG B:123 , GLY B:124 , SER B:494 , HOH B:971 , HOH B:1345
binding site for residue NA B 802
13
AD4
SOFTWARE
GLY B:124 , GLU B:198 , VAL B:200 , NIZ B:809 , HOH B:1345
binding site for residue CL B 803
14
AD5
SOFTWARE
THR B:323 , SER B:324
binding site for residue MPD B 804
15
AD6
SOFTWARE
TRP B:362 , GLY B:567 , HIS B:568 , ALA B:569 , GLU B:726 , HOH B:1305
binding site for residue MPD B 805
16
AD7
SOFTWARE
ASN B:741 , LEU B:742 , ARG B:744
binding site for residue MPD B 806
17
AD8
SOFTWARE
GLU B:351 , LEU B:352 , LYS B:365 , LYS B:564 , GLY B:567
binding site for residue MPD B 807
18
AD9
SOFTWARE
HIS B:381 , ARG B:382
binding site for residue PO4 B 808
19
AE1
SOFTWARE
ARG B:123 , GLU B:128 , GLU B:198 , VAL B:200 , GLY B:493 , GLN B:622 , CL B:803 , HOH B:992
binding site for residue NIZ B 809
20
AE2
SOFTWARE
ARG B:108 , TRP B:111 , HIS B:112 , ALA B:141 , PRO B:241 , SER B:324 , HEM B:801 , HOH B:914 , HOH B:1072
binding site for residue NIZ B 810
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SAPs(SNPs)/Variants
(0, 0)
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SCOP Domains
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Asymmetric Unit 1
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Asym.Unit (478 KB)
Header - Asym.Unit
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Header - Biol.Unit 1
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