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5SYI
Asym. Unit
Info
Asym.Unit (482 KB)
Biol.Unit 1 (473 KB)
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(1)
Title
:
STRUCTURE OF D141A VARIANT OF B. PSEUDOMALLEI KATG COMPLEXED WITH INH
Authors
:
P. C. Loewen
Date
:
11 Aug 16 (Deposition) - 07 Sep 16 (Release) - 07 Sep 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.70
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Catalase-Peroxidase, Katg, Isoniazid, D141A Variant, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. Vidossich, P. C. Loewen, X. Carpena, G. Fiorin, I. Fita, C. Rovira
Binding Of The Antitubercular Pro-Drug Isoniazid In The Hem Access Channel Of Catalase-Peroxidase (Katg). A Combined Structural And Metadynamics Investigation.
J Phys Chem B V. 118 2924 2014
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Hetero Components
(7, 17)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
2a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
2b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
3a: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDa)
3b: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDb)
3c: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDc)
3d: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDd)
4a: SODIUM ION (NAa)
4b: SODIUM ION (NAb)
5a: PYRIDINE-4-CARBOHYDRAZIDE (NIZa)
5b: PYRIDINE-4-CARBOHYDRAZIDE (NIZb)
5c: PYRIDINE-4-CARBOHYDRAZIDE (NIZc)
6a: OXYGEN MOLECULE (OXYa)
6b: OXYGEN MOLECULE (OXYb)
7a: PHOSPHATE ION (PO4a)
7b: PHOSPHATE ION (PO4b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
2
Ligand/Ion
CHLORIDE ION
2
HEM
2
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
3
MPD
4
Ligand/Ion
(4S)-2-METHYL-2,4-PENTANEDIOL
4
NA
2
Ligand/Ion
SODIUM ION
5
NIZ
3
Ligand/Ion
PYRIDINE-4-CARBOHYDRAZIDE
6
OXY
2
Ligand/Ion
OXYGEN MOLECULE
7
PO4
2
Ligand/Ion
PHOSPHATE ION
[
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Sites
(17, 17)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLY A:104 , LEU A:105 , TRP A:111 , VAL A:239 , LEU A:274 , ILE A:275 , GLY A:278 , HIS A:279 , GLY A:282 , LYS A:283 , THR A:284 , HIS A:285 , THR A:323 , SER A:324 , TRP A:330 , THR A:388 , OXY A:804 , NIZ A:805 , HOH A:953 , HOH A:962 , HOH A:1093
binding site for residue HEM A 801
02
AC2
SOFTWARE
GLY A:122 , ARG A:123 , GLY A:124 , SER A:494 , HOH A:991 , HOH A:1480
binding site for residue NA A 802
03
AC3
SOFTWARE
GLY A:124 , GLU A:198 , VAL A:200 , HOH A:1480 , HOH A:1622
binding site for residue CL A 803
04
AC4
SOFTWARE
TRP A:111 , HIS A:112 , HEM A:801 , NIZ A:805 , HOH A:903
binding site for residue OXY A 804
05
AC5
SOFTWARE
ARG A:108 , TRP A:111 , HIS A:112 , ALA A:141 , HEM A:801 , OXY A:804 , HOH A:1092
binding site for residue NIZ A 805
06
AC6
SOFTWARE
ASP A:83 , PRO A:154 , HOH A:1067 , HOH A:1185 , HOH A:1600
binding site for residue MPD A 806
07
AC7
SOFTWARE
LEU A:209 , HOH A:1039
binding site for residue MPD A 807
08
AC8
SOFTWARE
LYS A:380 , HIS A:381 , ARG A:382 , HOH A:1313
binding site for residue PO4 A 808
09
AC9
SOFTWARE
GLY B:104 , LEU B:105 , TRP B:111 , VAL B:239 , LEU B:274 , ILE B:275 , GLY B:278 , HIS B:279 , GLY B:282 , LYS B:283 , THR B:284 , HIS B:285 , THR B:323 , SER B:324 , TRP B:330 , THR B:388 , TRP B:420 , OXY B:804 , NIZ B:806 , HOH B:970 , HOH B:1013 , HOH B:1118
binding site for residue HEM B 801
10
AD1
SOFTWARE
GLY B:122 , ARG B:123 , GLY B:124 , SER B:494 , HOH B:989 , HOH B:1475
binding site for residue NA B 802
11
AD2
SOFTWARE
GLY B:124 , GLU B:198 , VAL B:200 , NIZ B:805 , HOH B:1475 , HOH B:1593
binding site for residue CL B 803
12
AD3
SOFTWARE
TRP B:111 , HIS B:112 , HEM B:801 , NIZ B:806 , HOH B:904
binding site for residue OXY B 804
13
AD4
SOFTWARE
ARG B:123 , GLU B:128 , GLU B:198 , ASP B:199 , GLY B:493 , SER B:494 , GLN B:622 , THR B:625 , CL B:803 , HOH B:1207
binding site for residue NIZ B 805
14
AD5
SOFTWARE
ARG B:108 , TRP B:111 , HIS B:112 , ALA B:141 , HEM B:801 , OXY B:804 , HOH B:929
binding site for residue NIZ B 806
15
AD6
SOFTWARE
THR B:323 , SER B:324 , HOH B:1332 , HOH B:1374
binding site for residue MPD B 807
16
AD7
SOFTWARE
LYS B:158
binding site for residue MPD B 808
17
AD8
SOFTWARE
LYS B:380 , HIS B:381 , ARG B:382 , HOH B:1085
binding site for residue PO4 B 809
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0 ; only for superseded entry 4KA6: 1,4)
Info
All SCOP Domains
1a: SCOP_d4ka6a1 ()
1b: SCOP_d4ka6a2 ()
1c: SCOP_d4ka6b1 ()
1d: SCOP_d4ka6b2 ()
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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