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Asym. Unit
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Asym.Unit (486 KB)
Biol.Unit 1 (477 KB)
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Title
:
CRYSTAL STRUCTURE OF THE E198A VARIANT OF CATALASE-PEROXIDASE KATG OF BURKHOLDERIA PSEUDOMALLEI
Authors
:
P. C. Loewen
Date
:
10 Aug 16 (Deposition) - 07 Sep 16 (Release) - 07 Sep 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.60
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Catalase-Peroxidase, E198A Variant, Tuberculosis Isonicotinic Acid Hydrazide, Oxidoreductase, Katg
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. Wiseman, X. Carpena, M. Feliz, L. J. Donald, M. Pons, I. Fita, P. C. Loewen
Isonicotinic Acid Hydrazide Conversion To Isonicotinyl-Nad By Catalase-Peroxidases.
J. Biol. Chem. V. 285 26662 2010
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Hetero Components
(7, 13)
Info
All Hetero Components
1a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
1b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
2a: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDa)
2b: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDb)
3a: (4R)-2-METHYLPENTANE-2,4-DIOL (MRDa)
4a: SODIUM ION (NAa)
4b: SODIUM ION (NAb)
5a: OXYGEN MOLECULE (OXYa)
5b: OXYGEN MOLECULE (OXYb)
6a: PHOSPHATE ION (PO4a)
6b: PHOSPHATE ION (PO4b)
7a: 1-HYDROPEROXY-L-TRYPTOPHAN (TOXa)
7b: 1-HYDROPEROXY-L-TRYPTOPHAN (TOXb)
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No.
Name
Count
Type
Full Name
1
HEM
2
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
2
MPD
2
Ligand/Ion
(4S)-2-METHYL-2,4-PENTANEDIOL
3
MRD
1
Ligand/Ion
(4R)-2-METHYLPENTANE-2,4-DIOL
4
NA
2
Ligand/Ion
SODIUM ION
5
OXY
2
Ligand/Ion
OXYGEN MOLECULE
6
PO4
2
Ligand/Ion
PHOSPHATE ION
7
TOX
2
Mod. Amino Acid
1-HYDROPEROXY-L-TRYPTOPHAN
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Sites
(11, 11)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLY A:104 , LEU A:105 , TOX A:111 , VAL A:239 , LEU A:274 , ILE A:275 , GLY A:278 , HIS A:279 , GLY A:282 , LYS A:283 , THR A:284 , HIS A:285 , THR A:323 , SER A:324 , THR A:388 , TRP A:420 , OXY A:803 , HOH A:953 , HOH A:1000 , HOH A:1076
binding site for residue HEM A 801
02
AC2
SOFTWARE
GLY A:122 , ARG A:123 , GLY A:124 , SER A:494 , HOH A:1031 , HOH A:1608
binding site for residue NA A 802
03
AC3
SOFTWARE
ARG A:108 , TOX A:111 , HIS A:112 , ASP A:141 , HEM A:801 , HOH A:905 , HOH A:931
binding site for residue OXY A 803
04
AC4
SOFTWARE
LYS A:379 , HIS A:381 , ARG A:382 , HOH A:1316
binding site for residue PO4 A 804
05
AC5
SOFTWARE
ALA A:290 , THR A:323 , SER A:324
binding site for residue MRD A 805
06
AC6
SOFTWARE
ASP A:83 , PRO A:154 , HOH A:1091 , HOH A:1605
binding site for residue MPD A 806
07
AC7
SOFTWARE
GLY B:104 , LEU B:105 , TOX B:111 , VAL B:239 , LEU B:274 , ILE B:275 , GLY B:278 , HIS B:279 , GLY B:282 , LYS B:283 , THR B:284 , HIS B:285 , THR B:323 , SER B:324 , THR B:388 , TRP B:420 , OXY B:803 , HOH B:961 , HOH B:1045 , HOH B:1130
binding site for residue HEM B 801
08
AC8
SOFTWARE
GLY B:122 , ARG B:123 , GLY B:124 , SER B:494 , HOH B:1027 , HOH B:1600
binding site for residue NA B 802
09
AC9
SOFTWARE
ARG B:108 , TOX B:111 , HIS B:112 , ASP B:141 , HEM B:801 , HOH B:903 , HOH B:1021
binding site for residue OXY B 803
10
AD1
SOFTWARE
ALA B:290 , THR B:323 , SER B:324 , HOH B:1447
binding site for residue MPD B 804
11
AD2
SOFTWARE
HIS B:381 , ARG B:382 , HOH B:943
binding site for residue PO4 B 805
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0 ; only for superseded entry 3N3R: 1,4)
Info
All SCOP Domains
1a: SCOP_d3n3ra1 ()
1b: SCOP_d3n3ra2 ()
1c: SCOP_d3n3rb1 ()
1d: SCOP_d3n3rb2 ()
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CATH Domains
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all CATH domains
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Asymmetric Unit 1
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Asym.Unit (486 KB)
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