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5SX1
Asym. Unit
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Asym.Unit (482 KB)
Biol.Unit 1 (474 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF D141E VARIANT OF B. PSEUDOMALLEI KATG
Authors
:
P. C. Loewen
Date
:
09 Aug 16 (Deposition) - 07 Sep 16 (Release) - 07 Sep 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Katg, Catalase-Peroxidase, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. Deemagarn, B. Wiseman, X. Carpena, A. Ivancich, I. Fita, P. C. Loewe
Two Alternative Substrate Paths For Compound I Formation An Reduction In Catalase-Peroxidase Katg From Burkholderia Pseudomallei.
Proteins V. 66 219 2007
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Hetero Components
(5, 14)
Info
All Hetero Components
1a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
1b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
2a: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDa)
2b: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDb)
2c: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDc)
3a: SODIUM ION (NAa)
3b: SODIUM ION (NAb)
4a: OXYGEN MOLECULE (OXYa)
4b: OXYGEN MOLECULE (OXYb)
4c: OXYGEN MOLECULE (OXYc)
4d: OXYGEN MOLECULE (OXYd)
4e: OXYGEN MOLECULE (OXYe)
5a: PHOSPHATE ION (PO4a)
5b: PHOSPHATE ION (PO4b)
View:
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Label:
No.
Name
Count
Type
Full Name
1
HEM
2
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
2
MPD
3
Ligand/Ion
(4S)-2-METHYL-2,4-PENTANEDIOL
3
NA
2
Ligand/Ion
SODIUM ION
4
OXY
5
Ligand/Ion
OXYGEN MOLECULE
5
PO4
2
Ligand/Ion
PHOSPHATE ION
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Sites
(14, 14)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLY A:104 , LEU A:105 , TRP A:111 , LEU A:274 , GLY A:278 , HIS A:279 , GLY A:282 , LYS A:283 , THR A:284 , HIS A:285 , THR A:323 , SER A:324 , THR A:388 , OXY A:803 , OXY A:804 , HOH A:945 , HOH A:1068 , HOH A:1113
binding site for residue HEM A 801
02
AC2
SOFTWARE
GLY A:122 , ARG A:123 , GLY A:124 , SER A:494 , HOH A:962 , HOH A:980
binding site for residue NA A 802
03
AC3
SOFTWARE
ARG A:108 , HIS A:112 , GLU A:141 , HEM A:801 , OXY A:804 , HOH A:1061
binding site for residue OXY A 803
04
AC4
SOFTWARE
TRP A:111 , HIS A:112 , GLU A:141 , HEM A:801 , OXY A:803 , HOH A:940
binding site for residue OXY A 804
05
AC5
SOFTWARE
LEU A:209 , THR A:323
binding site for residue MPD A 805
06
AC6
SOFTWARE
ASP A:83 , PRO A:154 , HOH A:1025 , HOH A:1073
binding site for residue MPD A 806
07
AC7
SOFTWARE
HIS A:381 , ARG A:382 , HOH A:1150
binding site for residue PO4 A 807
08
AC8
SOFTWARE
GLY B:104 , LEU B:105 , TRP B:111 , LEU B:274 , ILE B:275 , GLY B:278 , HIS B:279 , GLY B:282 , LYS B:283 , THR B:284 , HIS B:285 , THR B:323 , SER B:324 , TRP B:330 , THR B:388 , TRP B:420 , OXY B:803 , OXY B:804 , HOH B:930 , HOH B:991 , HOH B:1053
binding site for residue HEM B 801
09
AC9
SOFTWARE
GLY B:122 , ARG B:123 , GLY B:124 , SER B:494 , HOH B:941 , HOH B:963
binding site for residue NA B 802
10
AD1
SOFTWARE
ARG B:108 , HIS B:112 , GLU B:141 , HEM B:801 , OXY B:804 , HOH B:932
binding site for residue OXY B 803
11
AD2
SOFTWARE
TRP B:111 , HIS B:112 , GLU B:141 , HEM B:801 , OXY B:803 , HOH B:913
binding site for residue OXY B 804
12
AD3
SOFTWARE
ALA B:290
binding site for residue MPD B 805
13
AD4
SOFTWARE
LYS B:380 , HIS B:381 , ARG B:382 , HOH B:951
binding site for residue PO4 B 806
14
AD5
SOFTWARE
GLU B:141 , ILE B:237 , TYR B:238 , VAL B:239 , HOH B:913
binding site for residue OXY B 807
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0 ; only for superseded entry 2DV1: 1,4)
Info
All SCOP Domains
1a: SCOP_d2dv1a1 ()
1b: SCOP_d2dv1a2 ()
1c: SCOP_d2dv1b1 ()
1d: SCOP_d2dv1b2 ()
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CATH Domains
(0, 0 ; only for superseded entry 2DV1: 2,6)
Info
all CATH domains
1a: CATH_2dv1A03 ()
1b: CATH_2dv1B03 ()
1c: CATH_2dv1A01 ()
1d: CATH_2dv1B01 ()
2a: CATH_2dv1A04 ()
2b: CATH_2dv1B04 ()
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (482 KB)
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