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5PZM
Asym. Unit
Info
Asym.Unit (190 KB)
Biol.Unit 1 (94 KB)
Biol.Unit 2 (95 KB)
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Title
:
CRYSTAL STRUCTURE OF THE HEPATITIS C VIRUS NS5B RNA-DEPENDENT RNA POLYMERASE IN COMPLEX WITH 3-[2-(4-FLUOROPHENYL)-3-(METHYLCARBAMOYL)-1-BENZOFURAN-5-YL]BENZOIC ACID
Authors
:
S. Sheriff
Date
:
27 Feb 17 (Deposition) - 10 May 17 (Release) - 14 Jun 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.54
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Ns5B, Polymerase, Hcv, Fingers, Palm, Thumb, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. S. Yeung, B. R. Beno, K. Parcella, J. A. Bender, K. A. Grant-Young, A. Nickel, P. Gunaga, P. Anjanappa, R. O. Bora, K. Selvakumar, K. Rigat Y. K. Wang, M. Liu, J. Lemm, K. Mosure, S. Sheriff, C. Wan, M. Witmer, K. Kish, U. Hanumegowda, X. Zhuo, Y. Z. Shu, D. Parker, R. Haskell, A. Ng Q. Gao, E. Colston, J. Raybon, D. M. Grasela, K. Santone, M. Gao, N. A. Meanwell, M. Sinz, M. G. Soars, J. O. Knipe, S. B. Roberts, J. F. Kadow
Discovery Of A Hepatitis C Virus Ns5B Replicase Palm Site Allosteric Inhibitor (Bms-929075) Advanced To Phase 1 Clinical Studies.
J. Med. Chem. V. 60 4369 2017
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Hetero Components
(4, 14)
Info
All Hetero Components
1a: (2E)-3-(4-{[(1-{[(13-CYCLOHEXYL-6-... (23Ea)
1b: (2E)-3-(4-{[(1-{[(13-CYCLOHEXYL-6-... (23Eb)
2a: 3-[2-(4-FLUOROPHENYL)-3-(METHYLCAR... (8XSa)
3a: GLYCEROL (GOLa)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
4c: SULFATE ION (SO4c)
4d: SULFATE ION (SO4d)
4e: SULFATE ION (SO4e)
4f: SULFATE ION (SO4f)
4g: SULFATE ION (SO4g)
4h: SULFATE ION (SO4h)
4i: SULFATE ION (SO4i)
4j: SULFATE ION (SO4j)
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No.
Name
Count
Type
Full Name
1
23E
2
Ligand/Ion
(2E)-3-(4-{[(1-{[(13-CYCLOHEXYL-6-OXO-6,7-DIHYDRO-5H-INDOLO[1,2-D][1,4]BENZODIAZEPIN-10-YL)CARBONYL]AMINO}CYCLOPENTYL)CARBONYL]AMINO}PHENYL)PROP-2-ENOIC ACID
2
8XS
1
Ligand/Ion
3-[2-(4-FLUOROPHENYL)-3-(METHYLCARBAMOYL)-1-BENZOFURAN-5-YL]BENZOIC ACID
3
GOL
1
Ligand/Ion
GLYCEROL
4
SO4
10
Ligand/Ion
SULFATE ION
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Sites
(14, 14)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
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Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LEU A:392 , ALA A:396 , HIS A:428 , LEU A:492 , GLY A:493 , VAL A:494 , PRO A:495 , ARG A:498 , VAL A:499 , ARG A:503 , 23E B:601 , HOH B:748
binding site for residue 23E A 601
02
AC2
SOFTWARE
SER A:84 , VAL A:85 , GLU A:86 , ARG A:120 , HOH A:763
binding site for residue SO4 A 602
03
AC3
SOFTWARE
ARG A:48 , LYS A:51 , ARG A:222 , CYS A:223 , HOH A:743
binding site for residue SO4 A 603
04
AC4
SOFTWARE
HIS A:374 , SER A:476 , GLY A:516 , ARG A:517 , HOH A:756
binding site for residue SO4 A 604
05
AC5
SOFTWARE
PRO A:496 , LEU A:497 , ARG A:498 , ARG A:570 , HOH A:783
binding site for residue SO4 A 605
06
AC6
SOFTWARE
GLU A:361 , SER A:371 , SER A:478 , LYS A:523 , HOH A:771
binding site for residue SO4 A 606
07
AC7
SOFTWARE
ALA A:400 , ARG A:401 , HIS A:428 , 23E A:601 , LEU B:392 , ALA B:396 , HIS B:428 , LEU B:492 , GLY B:493 , VAL B:494 , PRO B:495 , ARG B:498 , VAL B:499 , ARG B:503 , HOH B:748 , HOH B:773 , HOH B:789
binding site for residue 23E B 601
08
AC8
SOFTWARE
ARG B:200 , LEU B:204 , LEU B:314 , CYS B:316 , ASP B:319 , VAL B:321 , ILE B:363 , SER B:365 , CYS B:366 , SER B:368 , LEU B:384 , MET B:414 , TYR B:448 , HOH B:728
binding site for residue 8XS B 602
09
AC9
SOFTWARE
SER B:84 , VAL B:85 , GLU B:86 , ARG B:120
binding site for residue SO4 B 603
10
AD1
SOFTWARE
GLY B:516 , ARG B:517 , HOH B:752
binding site for residue SO4 B 604
11
AD2
SOFTWARE
SER A:1 , LYS B:379 , ARG B:380
binding site for residue SO4 B 605
12
AD3
SOFTWARE
HIS B:475 , SER B:476 , HOH B:759
binding site for residue SO4 B 606
13
AD4
SOFTWARE
ARG B:48 , LYS B:51 , ARG B:158 , THR B:221 , ARG B:222 , CYS B:223
binding site for residue SO4 B 607
14
AD5
SOFTWARE
ASN B:406 , TRP B:408 , LEU B:433 , GLN B:436
binding site for residue GOL B 608
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SAPs(SNPs)/Variants
(0, 0)
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Asym.Unit (190 KB)
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Biol.Unit 1 (94 KB)
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