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5NXB
Asym. Unit
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Asym.Unit (510 KB)
Biol.Unit 1 (500 KB)
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(1)
Title
:
MOUSE GALACTOCEREBROSIDASE IN COMPLEX WITH SAPOSIN A
Authors
:
S. C. Graham, C. H. Hill, J. E. Deane
Date
:
09 May 17 (Deposition) - 24 May 17 (Release) - 24 May 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.60
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Krabbe Disease, Galactocerebroside, Galactosylceramide, Galc, Sapa, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. H. Hill, G. M. Cook, S. J. Spratley, S. C. Graham, J. E. Deane
The Mechanism Of Sphingolipid Processing Revealed By A Galc-Sapa Complex Structure
Biorxiv 2017
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Hetero Components
(3, 18)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
3a: N-ACETYL-D-GLUCOSAMINE (NAGa)
3b: N-ACETYL-D-GLUCOSAMINE (NAGb)
3c: N-ACETYL-D-GLUCOSAMINE (NAGc)
3d: N-ACETYL-D-GLUCOSAMINE (NAGd)
3e: N-ACETYL-D-GLUCOSAMINE (NAGe)
3f: N-ACETYL-D-GLUCOSAMINE (NAGf)
3g: N-ACETYL-D-GLUCOSAMINE (NAGg)
3h: N-ACETYL-D-GLUCOSAMINE (NAGh)
3i: N-ACETYL-D-GLUCOSAMINE (NAGi)
3j: N-ACETYL-D-GLUCOSAMINE (NAGj)
3k: N-ACETYL-D-GLUCOSAMINE (NAGk)
3l: N-ACETYL-D-GLUCOSAMINE (NAGl)
3m: N-ACETYL-D-GLUCOSAMINE (NAGm)
3n: N-ACETYL-D-GLUCOSAMINE (NAGn)
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No.
Name
Count
Type
Full Name
1
BMA
2
Ligand/Ion
BETA-D-MANNOSE
2
CA
2
Ligand/Ion
CALCIUM ION
3
NAG
14
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
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Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:477 , ASN A:479 , PHE A:511 , ASP A:660
binding site for residue CA A 709
02
AC2
SOFTWARE
ASP B:477 , ASN B:479 , PHE B:511 , ASP B:660
binding site for residue CA B 709
03
AC3
SOFTWARE
ARG A:37 , ILE A:281 , ASN A:284
binding site for Poly-Saccharide residues NAG A 701 through NAG A 702 bound to ASN A 284
04
AC4
SOFTWARE
ASP A:359 , LEU A:361 , ASN A:363
binding site for Poly-Saccharide residues NAG A 703 through NAG A 704 bound to ASN A 363
05
AC5
SOFTWARE
LYS A:350 , TYR A:385 , ASN A:387
binding site for Mono-Saccharide NAG A 705 bound to ASN A 387
06
AC6
SOFTWARE
THR A:541 , ASN A:542 , LYS A:620 , ALA A:667 , ARG A:668
binding site for Poly-Saccharide residues NAG A 706 through BMA A 708 bound to ASN A 542
07
AC7
SOFTWARE
ARG B:37 , ILE B:281 , ASN B:284
binding site for Poly-Saccharide residues NAG B 701 through NAG B 702 bound to ASN B 284
08
AC8
SOFTWARE
ASP B:359 , LEU B:361 , ASN B:363
binding site for Poly-Saccharide residues NAG B 703 through NAG B 704 bound to ASN B 363
09
AC9
SOFTWARE
LYS B:350 , TYR B:385 , ASN B:387 , SER B:389
binding site for Mono-Saccharide NAG B 705 bound to ASN B 387
10
AD1
SOFTWARE
THR B:541 , ASN B:542 , LYS B:620 , ALA B:667 , ARG B:668
binding site for Poly-Saccharide residues NAG B 706 through BMA B 708 bound to ASN B 542
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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SCOP Domains
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (510 KB)
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