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5NPP
Asym. Unit
Info
Asym.Unit (270 KB)
Biol.Unit 1 (261 KB)
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(1)
Title
:
2.22A STRUCTURE OF THIOPHENE2 AND GSK945237 WITH S.AUREUS DNA GYRASE AND DNA
Authors
:
B. D. Bax, P. F. Chan, R. A. Stavenger
Date
:
18 Apr 17 (Deposition) - 12 Jul 17 (Release) - 12 Jul 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.22
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C,D,E,F (1x)
Keywords
:
Type Iia Topoisomerase, Antibacterial, Inhibitor, Isomerase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. F. Chan, T. Germe, B. D. Bax, J. Huang, R. K. Thalji, E. Bacque, A. Checchia, D. Chen, H. Cui, X. Ding, K. Ingraham, L. Mccloskey, K. Raha, V. Srikannathasan, A. Maxwell, R. A. Stavenger
Thiophene Antibacterials That Allosterically Stabilize Dna-Cleavage Complexes With Dna Gyrase.
Proc. Natl. Acad. Sci. V. 114 E4492 2017 U. S. A.
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Hetero Components
(6, 16)
Info
All Hetero Components
1a: (1R)-1-[(4-{[(6,7-DIHYDRO[1,4]DIOX... (6EJa)
2a: ~{N}-[(1~{R})-2-AZANYL-1-PHENYL-ET... (94Ka)
2b: ~{N}-[(1~{R})-2-AZANYL-1-PHENYL-ET... (94Kb)
3a: DIMETHYL SULFOXIDE (DMSa)
4a: GLYCEROL (GOLa)
4b: GLYCEROL (GOLb)
4c: GLYCEROL (GOLc)
4d: GLYCEROL (GOLd)
4e: GLYCEROL (GOLe)
4f: GLYCEROL (GOLf)
4g: GLYCEROL (GOLg)
4h: GLYCEROL (GOLh)
4i: GLYCEROL (GOLi)
5a: MANGANESE (II) ION (MNa)
5b: MANGANESE (II) ION (MNb)
6a: SODIUM ION (NAa)
View:
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Label:
No.
Name
Count
Type
Full Name
1
6EJ
1
Ligand/Ion
(1R)-1-[(4-{[(6,7-DIHYDRO[1,4]DIOXINO[2,3-C]PYRIDAZIN-3-YL)METHYL]AMINO}PIPERIDIN-1-YL)METHYL]-9-FLUORO-1,2-DIHYDRO-4H-PYRROLO[3,2,1-IJ]QUINOLIN-4-ONE
2
94K
2
Ligand/Ion
~{N}-[(1~{R})-2-AZANYL-1-PHENYL-ETHYL]-5-(2-CHLOROPHENYL)-2-METHYL-THIOPHENE-3-CARBOXAMIDE
3
DMS
1
Ligand/Ion
DIMETHYL SULFOXIDE
4
GOL
9
Ligand/Ion
GLYCEROL
5
MN
2
Ligand/Ion
MANGANESE (II) ION
6
NA
1
Ligand/Ion
SODIUM ION
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Sites
(16, 16)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP B:508 , ASP B:510 , HOH B:1740 , HOH B:1765 , HOH B:1796 , HOH D:1714
binding site for residue MN B 1501
02
AC2
SOFTWARE
ARG B:630 , ILE B:633 , GLU B:634 , VAL B:1031 , MET B:1179 , ARG B:1342 , PRO B:1343 , HOH B:1826 , HOH B:1833
binding site for residue 94K B 1502
03
AC3
SOFTWARE
GLU B:1251 , GLY B:1255 , ARG B:1256 , HOH B:1605 , HOH B:1861 , SER D:1315 , ASN D:1319
binding site for residue GOL B 1503
04
AC4
SOFTWARE
ARG B:1047 , ARG B:1048 , ILE B:1147 , GLU B:1156 , HOH B:1673 , HOH B:1722 , HOH B:1746
binding site for residue GOL B 1504
05
AC5
SOFTWARE
GLU B:1190 , GLU B:1214 , ASP B:1482 , ASP B:1483 , ARG B:1484 , HOH B:1721
binding site for residue GOL B 1505
06
AC6
SOFTWARE
TYR B:1322 , LYS B:1323 , THR B:1325 , GLN B:1328 , HOH B:1926 , HOH D:1916
binding site for residue NA B 1506
07
AC7
SOFTWARE
PHE B:1097 , MET B:1113 , GLY B:1115 , HOH B:1904 , HOH B:1963
binding site for residue DMS B 1507
08
AC8
SOFTWARE
ASP D:508 , ASP D:510 , HOH D:1673 , HOH D:1683 , HOH D:1738 , HOH F:112
binding site for residue MN D 1501
09
AC9
SOFTWARE
ARG D:630 , ILE D:633 , GLU D:634 , ALA D:637 , VAL D:1031 , MET D:1179 , ARG D:1342 , PRO D:1343 , HOH D:1672 , HOH D:1828 , HOH D:1899 , HOH D:1965
binding site for residue 94K D 1502
10
AD1
SOFTWARE
PRO D:1044 , ARG D:1047 , GLU D:1156 , HOH D:1688 , HOH D:1737 , HOH D:1837
binding site for residue GOL D 1503
11
AD2
SOFTWARE
ARG B:1244 , ASN B:1319 , GLU D:1251 , GLY D:1255 , ARG D:1256 , GLN D:1257 , HOH D:1678 , HOH D:1754
binding site for residue GOL D 1504
12
AD3
SOFTWARE
GLY D:1115 , GLN D:1267 , HOH D:1818 , HOH D:1866 , DC F:-5
binding site for residue GOL D 1505
13
AD4
SOFTWARE
ASP D:1389 , HIS D:1390 , DA E:-8
binding site for residue GOL D 1506
14
AD5
SOFTWARE
DG A:1 , DT A:2 , HOH A:216 , SER B:1084 , HOH B:1742 , DG E:-1
binding site for residue GOL A 101
15
AD6
SOFTWARE
DT A:2 , DA A:3 , ALA B:1068 , GLY B:1072 , MET B:1075 , ASP B:1083 , MET B:1121 , HOH B:1727 , HOH B:1855 , DT C:2 , DA C:3 , HOH C:219 , ALA D:1068 , MET D:1075 , ASP D:1083 , MET D:1121
binding site for residue 6EJ C 101
16
AD7
SOFTWARE
DG C:1 , DT C:2 , HOH C:206 , HOH C:208 , SER D:1084 , HOH D:1669 , DA F:-2 , DG F:-1
binding site for residue GOL C 102
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
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Exons
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Asymmetric Unit 1
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