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5NO2
Asym. Unit
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Asym.Unit (873 KB)
Biol.Unit 1 (863 KB)
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Title
:
RSGA-GDPNP BOUND TO THE 30S RIBOSOMAL SUBUNIT (RSGA ASSEMBLY INTERMEDIATE)
Authors
:
J. P. Lopez-Alonso, T. Kaminishi, T. Kikuchi, Y. Hirata, I. Iturrioz, N A. Schedlbauer, Y. Hase, S. Goto, D. Kurita, A. Muto, S. Zhou, C. Naoe, D D. Gil-Carton, C. Takemoto, H. Himeno, P. Fucini, S. R. Connell
Date
:
10 Apr 17 (Deposition) - 24 May 17 (Release) - 24 May 17 (Revision)
Method
:
ELECTRON MICROSCOPY
Resolution
:
5.16
Chains
:
Asym. Unit : A,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,Z
Biol. Unit 1: A,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,Z (1x)
Keywords
:
Ribosome
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. P. Lopez-Alonso, T. Kaminishi, T. Kikuchi, Y. Hirata, I. Iturrioz, N. Dhimole, A. Schedlbauer, Y. Hase, S. Goto, D. Kurita, A. Muto, S. Zhou, C. Naoe, D. J. Mills, D. Gil-Carton, C. Takemoto, H. Himeno, P. Fucini, S. R. Connell
Rsga Couples The Maturation State Of The 30S Ribosomal Decoding Center To Activation Of Its Gtpase Pocket.
Nucleic Acids Res. 2017
[
close entry info
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Hetero Components
(10, 84)
Info
All Hetero Components
01a: 2N-METHYLGUANOSINE-5'-MONOPHOSPHAT... (2MGa)
01b: 2N-METHYLGUANOSINE-5'-MONOPHOSPHAT... (2MGb)
01c: 2N-METHYLGUANOSINE-5'-MONOPHOSPHAT... (2MGc)
02a: 4N,O2'-METHYLCYTIDINE-5'-MONOPHOSP... (4OCa)
03a: 5-METHYLCYTIDINE-5'-MONOPHOSPHATE (5MCa)
03b: 5-METHYLCYTIDINE-5'-MONOPHOSPHATE (5MCb)
04a: N7-METHYL-GUANOSINE-5'-MONOPHOSPHA... (G7Ma)
05a: PHOSPHOAMINOPHOSPHONIC ACID-GUANYL... (GNPa)
06a: 6N-DIMETHYLADENOSINE-5'-MONOPHOSHA... (MA6a)
06b: 6N-DIMETHYLADENOSINE-5'-MONOPHOSHA... (MA6b)
07a: MAGNESIUM ION (MGa)
07aa: MAGNESIUM ION (MGaa)
07ab: MAGNESIUM ION (MGab)
07ac: MAGNESIUM ION (MGac)
07ad: MAGNESIUM ION (MGad)
07ae: MAGNESIUM ION (MGae)
07af: MAGNESIUM ION (MGaf)
07ag: MAGNESIUM ION (MGag)
07ah: MAGNESIUM ION (MGah)
07ai: MAGNESIUM ION (MGai)
07aj: MAGNESIUM ION (MGaj)
07ak: MAGNESIUM ION (MGak)
07al: MAGNESIUM ION (MGal)
07am: MAGNESIUM ION (MGam)
07an: MAGNESIUM ION (MGan)
07ao: MAGNESIUM ION (MGao)
07ap: MAGNESIUM ION (MGap)
07aq: MAGNESIUM ION (MGaq)
07ar: MAGNESIUM ION (MGar)
07as: MAGNESIUM ION (MGas)
07at: MAGNESIUM ION (MGat)
07au: MAGNESIUM ION (MGau)
07av: MAGNESIUM ION (MGav)
07aw: MAGNESIUM ION (MGaw)
07ax: MAGNESIUM ION (MGax)
07ay: MAGNESIUM ION (MGay)
07az: MAGNESIUM ION (MGaz)
07b: MAGNESIUM ION (MGb)
07ba: MAGNESIUM ION (MGba)
07bb: MAGNESIUM ION (MGbb)
07bc: MAGNESIUM ION (MGbc)
07bd: MAGNESIUM ION (MGbd)
07be: MAGNESIUM ION (MGbe)
07bf: MAGNESIUM ION (MGbf)
07bg: MAGNESIUM ION (MGbg)
07bh: MAGNESIUM ION (MGbh)
07bi: MAGNESIUM ION (MGbi)
07bj: MAGNESIUM ION (MGbj)
07bk: MAGNESIUM ION (MGbk)
07bl: MAGNESIUM ION (MGbl)
07bm: MAGNESIUM ION (MGbm)
07bn: MAGNESIUM ION (MGbn)
07bo: MAGNESIUM ION (MGbo)
07bp: MAGNESIUM ION (MGbp)
07bq: MAGNESIUM ION (MGbq)
07br: MAGNESIUM ION (MGbr)
07bs: MAGNESIUM ION (MGbs)
07c: MAGNESIUM ION (MGc)
07d: MAGNESIUM ION (MGd)
07e: MAGNESIUM ION (MGe)
07f: MAGNESIUM ION (MGf)
07g: MAGNESIUM ION (MGg)
07h: MAGNESIUM ION (MGh)
07i: MAGNESIUM ION (MGi)
07j: MAGNESIUM ION (MGj)
07k: MAGNESIUM ION (MGk)
07l: MAGNESIUM ION (MGl)
07m: MAGNESIUM ION (MGm)
07n: MAGNESIUM ION (MGn)
07o: MAGNESIUM ION (MGo)
07p: MAGNESIUM ION (MGp)
07q: MAGNESIUM ION (MGq)
07r: MAGNESIUM ION (MGr)
07s: MAGNESIUM ION (MGs)
07t: MAGNESIUM ION (MGt)
07u: MAGNESIUM ION (MGu)
07v: MAGNESIUM ION (MGv)
07w: MAGNESIUM ION (MGw)
07x: MAGNESIUM ION (MGx)
07y: MAGNESIUM ION (MGy)
07z: MAGNESIUM ION (MGz)
08a: PSEUDOURIDINE-5'-MONOPHOSPHATE (PSUa)
09a: 3-METHYLURIDINE-5'-MONOPHOSHATE (UR3a)
10a: ZINC ION (ZNa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
2MG
3
Mod. Nucleotide
2N-METHYLGUANOSINE-5'-MONOPHOSPHATE
2
4OC
1
Mod. Nucleotide
4N,O2'-METHYLCYTIDINE-5'-MONOPHOSPHATE
3
5MC
2
Mod. Nucleotide
5-METHYLCYTIDINE-5'-MONOPHOSPHATE
4
G7M
1
Mod. Nucleotide
N7-METHYL-GUANOSINE-5'-MONOPHOSPHATE
5
GNP
1
Ligand/Ion
PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER
6
MA6
2
Mod. Nucleotide
6N-DIMETHYLADENOSINE-5'-MONOPHOSHATE
7
MG
71
Ligand/Ion
MAGNESIUM ION
8
PSU
1
Mod. Nucleotide
PSEUDOURIDINE-5'-MONOPHOSPHATE
9
UR3
1
Mod. Nucleotide
3-METHYLURIDINE-5'-MONOPHOSHATE
10
ZN
1
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(63, 63)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
20: AE2 (SOFTWARE)
21: AE3 (SOFTWARE)
22: AE4 (SOFTWARE)
23: AE5 (SOFTWARE)
24: AE6 (SOFTWARE)
25: AE7 (SOFTWARE)
26: AE8 (SOFTWARE)
27: AE9 (SOFTWARE)
28: AF1 (SOFTWARE)
29: AF2 (SOFTWARE)
30: AF3 (SOFTWARE)
31: AF4 (SOFTWARE)
32: AF5 (SOFTWARE)
33: AF6 (SOFTWARE)
34: AF7 (SOFTWARE)
35: AF8 (SOFTWARE)
36: AF9 (SOFTWARE)
37: AG1 (SOFTWARE)
38: AG2 (SOFTWARE)
39: AG3 (SOFTWARE)
40: AG4 (SOFTWARE)
41: AG5 (SOFTWARE)
42: AG6 (SOFTWARE)
43: AG7 (SOFTWARE)
44: AG8 (SOFTWARE)
45: AG9 (SOFTWARE)
46: AH1 (SOFTWARE)
47: AH2 (SOFTWARE)
48: AH3 (SOFTWARE)
49: AH4 (SOFTWARE)
50: AH5 (SOFTWARE)
51: AH6 (SOFTWARE)
52: AH7 (SOFTWARE)
53: AH8 (SOFTWARE)
54: AH9 (SOFTWARE)
55: AI1 (SOFTWARE)
56: AI2 (SOFTWARE)
57: AI3 (SOFTWARE)
58: AI4 (SOFTWARE)
59: AI5 (SOFTWARE)
60: AI6 (SOFTWARE)
61: AI7 (SOFTWARE)
62: AI8 (SOFTWARE)
63: AI9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
A A:676 , U A:677
binding site for residue MG A 1603
02
AC2
SOFTWARE
C A:620 , A A:621
binding site for residue MG A 1605
03
AC3
SOFTWARE
A A:174 , C A:175
binding site for residue MG A 1607
04
AC4
SOFTWARE
G A:145 , G A:177 , A A:197
binding site for residue MG A 1608
05
AC5
SOFTWARE
C A:440 , A A:441
binding site for residue MG A 1609
06
AC6
SOFTWARE
G A:113 , C A:308
binding site for residue MG A 1610
07
AC7
SOFTWARE
G A:859 , A A:860
binding site for residue MG A 1611
08
AC8
SOFTWARE
A A:554
binding site for residue MG A 1612
09
AC9
SOFTWARE
U A:751 , G A:752
binding site for residue MG A 1613
10
AD1
SOFTWARE
C A:314 , C A:328 , A A:329
binding site for residue MG A 1614
11
AD2
SOFTWARE
C A:311
binding site for residue MG A 1615
12
AD3
SOFTWARE
U A:114
binding site for residue MG A 1616
13
AD4
SOFTWARE
C A:355 , A A:356
binding site for residue MG A 1617
14
AD5
SOFTWARE
G A:888
binding site for residue MG A 1619
15
AD6
SOFTWARE
A A:819
binding site for residue MG A 1620
16
AD7
SOFTWARE
A A:1394
binding site for residue MG A 1621
17
AD8
SOFTWARE
C A:770 , G A:771
binding site for residue MG A 1622
18
AD9
SOFTWARE
A A:609
binding site for residue MG A 1623
19
AE1
SOFTWARE
U A:610
binding site for residue MG A 1624
20
AE2
SOFTWARE
G A:21
binding site for residue MG A 1626
21
AE3
SOFTWARE
G A:100 , A A:101
binding site for residue MG A 1627
22
AE4
SOFTWARE
A A:116 , G A:117 , G A:289
binding site for residue MG A 1628
23
AE5
SOFTWARE
U A:180 , A A:181 , C A:194 , A A:195
binding site for residue MG A 1629
24
AE6
SOFTWARE
G A:266
binding site for residue MG A 1630
25
AE7
SOFTWARE
A A:329
binding site for residue MG A 1631
26
AE8
SOFTWARE
G A:324
binding site for residue MG A 1632
27
AE9
SOFTWARE
G A:331 , C A:352
binding site for residue MG A 1633
28
AF1
SOFTWARE
G A:361 , G A:362
binding site for residue MG A 1634
29
AF2
SOFTWARE
G A:417 , C A:418
binding site for residue MG A 1635
30
AF3
SOFTWARE
A A:509 , A A:510
binding site for residue MG A 1636
31
AF4
SOFTWARE
PSU A:516 , G A:517 , A A:532 , A A:533
binding site for residue MG A 1637
32
AF5
SOFTWARE
G A:537
binding site for residue MG A 1638
33
AF6
SOFTWARE
A A:547 , G A:548
binding site for residue MG A 1639
34
AF7
SOFTWARE
A A:559 , A A:560 , U A:562
binding site for residue MG A 1640
35
AF8
SOFTWARE
A A:572 , A A:573 , A A:574
binding site for residue MG A 1641
36
AF9
SOFTWARE
G A:577 , C A:578 , C A:817
binding site for residue MG A 1642
37
AG1
SOFTWARE
A A:608 , A A:609
binding site for residue MG A 1644
38
AG2
SOFTWARE
C A:795
binding site for residue MG A 1646
39
AG3
SOFTWARE
A A:814 , A A:815
binding site for residue MG A 1647
40
AG4
SOFTWARE
G A:858 , G A:869
binding site for residue MG A 1648
41
AG5
SOFTWARE
U A:891
binding site for residue MG A 1649
42
AG6
SOFTWARE
G A:1079
binding site for residue MG A 1650
43
AG7
SOFTWARE
G A:1416 , G A:1417
binding site for residue MG A 1651
44
AG8
SOFTWARE
UR3 A:1498 , A A:1499 , A A:1500
binding site for residue MG A 1652
45
AG9
SOFTWARE
A A:1500 , G A:1505 , A A:1507 , A A:1508
binding site for residue MG A 1653
46
AH1
SOFTWARE
G A:1526 , U A:1527
binding site for residue MG A 1654
47
AH2
SOFTWARE
G A:944 , G A:945
binding site for residue MG A 1655
48
AH3
SOFTWARE
G A:1154
binding site for residue MG A 1656
49
AH4
SOFTWARE
C A:934 , U A:1345
binding site for residue MG A 1657
50
AH5
SOFTWARE
A A:937 , A A:938 , G A:939
binding site for residue MG A 1658
51
AH6
SOFTWARE
A A:1204
binding site for residue MG A 1659
52
AH7
SOFTWARE
A A:1197 , G A:1198
binding site for residue MG A 1660
53
AH8
SOFTWARE
U A:1095 , C A:1096 , G A:1108
binding site for residue MG A 1662
54
AH9
SOFTWARE
A A:1110 , A A:1111
binding site for residue MG A 1663
55
AI1
SOFTWARE
C A:980 , U A:981 , U A:982 , G A:1222
binding site for residue MG A 1664
56
AI2
SOFTWARE
C A:1303 , G A:1304
binding site for residue MG A 1665
57
AI3
SOFTWARE
U A:1330 , THR M:20 , ILE M:22 , VAL M:25
binding site for residue MG A 1667
58
AI4
SOFTWARE
SER N:58
binding site for residue MG N 201
59
AI5
SOFTWARE
LYS P:12
binding site for residue MG P 101
60
AI6
SOFTWARE
ASN T:78
binding site for residue MG T 101
61
AI7
SOFTWARE
CYS Z:297 , CYS Z:302 , HIS Z:304 , CYS Z:310
binding site for residue ZN Z 401
62
AI8
SOFTWARE
ASN Z:160 , LYS Z:161 , ASP Z:163 , SER Z:191 , SER Z:192 , HIS Z:193 , SER Z:216 , GLY Z:217 , VAL Z:218 , GLY Z:219 , LYS Z:220 , SER Z:221 , SER Z:222 , ASP Z:238 , SER Z:240 , GLN Z:247 , HIS Z:248 , THR Z:249 , THR Z:250 , MG Z:403
binding site for residue GNP Z 402
63
AI9
SOFTWARE
SER Z:221 , THR Z:250 , GNP Z:402
binding site for residue MG Z 403
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
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[
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
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CATH Domains
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all CATH domains
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Pfam Domains
(0, 0)
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all PFAM domains
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Sorry, no Info available
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