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5NFF
Asym. Unit
Info
Asym.Unit (870 KB)
Biol.Unit 1 (59 KB)
Biol.Unit 10 (58 KB)
Biol.Unit 11 (58 KB)
Biol.Unit 12 (58 KB)
Biol.Unit 13 (57 KB)
Biol.Unit 14 (58 KB)
Biol.Unit 15 (59 KB)
Biol.Unit 16 (58 KB)
Biol.Unit 2 (58 KB)
Biol.Unit 3 (58 KB)
Biol.Unit 4 (58 KB)
Biol.Unit 5 (58 KB)
Biol.Unit 6 (58 KB)
Biol.Unit 7 (58 KB)
Biol.Unit 8 (58 KB)
Biol.Unit 9 (58 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF GP1 RECEPTOR BINDING DOMAIN FROM MOROGORO VIRUS
Authors
:
H. Israeli, H. Cohen-Dvashi, A. Shulman, A. Shimon, R. Diskin
Date
:
14 Mar 17 (Deposition) - 19 Apr 17 (Release) - 10 May 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.62
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P
Biol. Unit 1: B (1x)
Biol. Unit 2: A (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Biol. Unit 5: E (1x)
Biol. Unit 6: F (1x)
Biol. Unit 7: G (1x)
Biol. Unit 8: H (1x)
Biol. Unit 9: I (1x)
Biol. Unit 10: J (1x)
Biol. Unit 11: K (1x)
Biol. Unit 12: L (1x)
Biol. Unit 13: M (1x)
Biol. Unit 14: N (1x)
Biol. Unit 15: O (1x)
Biol. Unit 16: P (1x)
Keywords
:
Viral Envelope, Receptor Binding-Domain, Glycoprotein, Viral Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. Israeli, H. Cohen-Dvashi, A. Shulman, A. Shimon, R. Diskin
Mapping Of The Lassa Virus Lamp1 Binding Site Reveals Uniqu Determinants Not Shared By Other Old World Arenaviruses.
Plos Pathog. V. 13 06337 2017
[
close entry info
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Hetero Components
(3, 34)
Info
All Hetero Components
1a: CITRIC ACID (CITa)
1b: CITRIC ACID (CITb)
1c: CITRIC ACID (CITc)
1d: CITRIC ACID (CITd)
1e: CITRIC ACID (CITe)
1f: CITRIC ACID (CITf)
2a: ALPHA-D-MANNOSE (MANa)
2b: ALPHA-D-MANNOSE (MANb)
2c: ALPHA-D-MANNOSE (MANc)
2d: ALPHA-D-MANNOSE (MANd)
2e: ALPHA-D-MANNOSE (MANe)
3a: N-ACETYL-D-GLUCOSAMINE (NAGa)
3b: N-ACETYL-D-GLUCOSAMINE (NAGb)
3c: N-ACETYL-D-GLUCOSAMINE (NAGc)
3d: N-ACETYL-D-GLUCOSAMINE (NAGd)
3e: N-ACETYL-D-GLUCOSAMINE (NAGe)
3f: N-ACETYL-D-GLUCOSAMINE (NAGf)
3g: N-ACETYL-D-GLUCOSAMINE (NAGg)
3h: N-ACETYL-D-GLUCOSAMINE (NAGh)
3i: N-ACETYL-D-GLUCOSAMINE (NAGi)
3j: N-ACETYL-D-GLUCOSAMINE (NAGj)
3k: N-ACETYL-D-GLUCOSAMINE (NAGk)
3l: N-ACETYL-D-GLUCOSAMINE (NAGl)
3m: N-ACETYL-D-GLUCOSAMINE (NAGm)
3n: N-ACETYL-D-GLUCOSAMINE (NAGn)
3o: N-ACETYL-D-GLUCOSAMINE (NAGo)
3p: N-ACETYL-D-GLUCOSAMINE (NAGp)
3q: N-ACETYL-D-GLUCOSAMINE (NAGq)
3r: N-ACETYL-D-GLUCOSAMINE (NAGr)
3s: N-ACETYL-D-GLUCOSAMINE (NAGs)
3t: N-ACETYL-D-GLUCOSAMINE (NAGt)
3u: N-ACETYL-D-GLUCOSAMINE (NAGu)
3v: N-ACETYL-D-GLUCOSAMINE (NAGv)
3w: N-ACETYL-D-GLUCOSAMINE (NAGw)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CIT
6
Ligand/Ion
CITRIC ACID
2
MAN
5
Ligand/Ion
ALPHA-D-MANNOSE
3
NAG
23
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
[
close Hetero Component info
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Sites
(25, 25)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
20: AE2 (SOFTWARE)
21: AE3 (SOFTWARE)
22: AE4 (SOFTWARE)
23: AE5 (SOFTWARE)
24: AE6 (SOFTWARE)
25: AE7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
TYR B:128 , LEU B:132 , TYR B:149 , GLU B:150 , ILE B:182 , ASN C:145 , PHE C:146 , ASN C:147 , GLN C:148
binding site for residue CIT B 305
02
AC2
SOFTWARE
ARG C:191 , TYR C:204
binding site for residue CIT C 302
03
AC3
SOFTWARE
ASN B:145 , ASN B:147 , TYR C:128 , TYR C:149 , GLU C:150 , TYR C:165 , ILE C:182
binding site for residue CIT C 303
04
AC4
SOFTWARE
TYR E:128 , TYR E:149 , GLU E:150 , TYR E:165 , ILE E:182 , ASN F:145 , ASN F:147
binding site for residue CIT E 303
05
AC5
SOFTWARE
ASN E:145 , ASN E:147 , TYR F:128 , TYR F:149 , GLU F:150 , TYR F:165 , THR F:181 , ILE F:182
binding site for residue CIT F 303
06
AC6
SOFTWARE
TYR I:128 , TYR I:149 , GLU I:150 , TYR I:165 , THR I:181 , ILE I:182 , ASN L:145 , PHE L:146 , ASN L:147
binding site for residue CIT I 302
07
AC7
SOFTWARE
ASN A:88 , ASN A:108 , TYR A:215 , GLN A:216
binding site for Mono-Saccharide NAG A 301 bound to ASN A 108
08
AC8
SOFTWARE
VAL A:96 , THR A:100 , GLY A:101 , LEU A:102 , GLY A:159 , ASN A:222
binding site for Mono-Saccharide NAG A 302 bound to ASN A 222
09
AC9
SOFTWARE
ASN B:88 , ASN B:108 , TYR B:215 , GLN B:216
binding site for Mono-Saccharide NAG B 301 bound to ASN B 108
10
AD1
SOFTWARE
ASN B:118 , SER B:120
binding site for Mono-Saccharide NAG B 304 bound to ASN B 118
11
AD2
SOFTWARE
VAL B:96 , LEU B:127 , GLY B:159 , ASN B:222
binding site for Poly-Saccharide residues NAG B 302 through NAG B 303 bound to ASN B 222
12
AD3
SOFTWARE
ASN C:88 , ASN C:108 , ALA C:214 , TYR C:215 , GLN C:216
binding site for Mono-Saccharide NAG C 301 bound to ASN C 108
13
AD4
SOFTWARE
ASN D:88 , ASN D:108 , ALA D:214 , GLN D:216
binding site for Mono-Saccharide NAG D 301 bound to ASN D 108
14
AD5
SOFTWARE
ASN E:88 , ASN E:108 , ALA E:214 , GLN E:216
binding site for Mono-Saccharide NAG E 302 bound to ASN E 108
15
AD6
SOFTWARE
VAL E:96 , LEU E:102 , GLY E:159 , ASN E:222
binding site for Mono-Saccharide NAG E 301 bound to ASN E 222
16
AD7
SOFTWARE
ASN F:88 , ASN F:108 , ALA F:214 , TYR F:215 , GLN F:216
binding site for Poly-Saccharide residues NAG F 301 through NAG F 302 bound to ASN F 108
17
AD8
SOFTWARE
ASN G:88 , ASN G:108 , ALA G:214 , GLN G:216
binding site for Mono-Saccharide NAG G 301 bound to ASN G 108
18
AD9
SOFTWARE
VAL G:96 , THR G:100 , GLY G:159 , LYS G:160 , ASN G:222
binding site for Mono-Saccharide NAG G 302 bound to ASN G 222
19
AE1
SOFTWARE
ASN H:88 , ASN H:108 , ALA H:214 , GLN H:216
binding site for Mono-Saccharide NAG H 301 bound to ASN H 108
20
AE2
SOFTWARE
ARG G:192 , TYR G:204 , VAL H:96 , THR H:100 , ASN H:126 , LYS H:130 , GLY H:159 , LYS H:160 , ASN H:222
binding site for Poly-Saccharide residues MAN H 302 through NAG H 305 bound to ASN H 222
21
AE3
SOFTWARE
ASN I:88 , ASN I:108 , ALA I:214 , GLN I:216
binding site for Mono-Saccharide NAG I 301 bound to ASN I 108
22
AE4
SOFTWARE
VAL J:96 , THR J:100 , LEU J:102 , LYS J:130 , GLY J:159 , ASN J:222
binding site for Mono-Saccharide NAG J 301 bound to ASN J 222
23
AE5
SOFTWARE
ASN K:88 , ASN K:108 , TYR K:215
binding site for Mono-Saccharide NAG K 301 bound to ASN K 108
24
AE6
SOFTWARE
ASN L:88 , ASN L:108 , TYR L:215 , GLN L:216
binding site for Mono-Saccharide NAG L 301 bound to ASN L 108
25
AE7
SOFTWARE
ARG K:191 , TYR K:204 , VAL O:96 , THR O:100 , LEU O:102 , ASN O:126 , GLY O:159 , LYS O:160 , ASN O:222
binding site for Poly-Saccharide residues MAN O 301 through NAG O 305 bound to ASN O 222
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Pfam Domains
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