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5NER
Asym. Unit
Info
Asym.Unit (289 KB)
Biol.Unit 1 (280 KB)
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(1)
Title
:
LOCALISED RECONSTRUCTION OF ALPHA V BETA 6 BOUND TO FOOT AND MOUTH DISEASE VIRUS O PANASIA - POSE A PRIME
Authors
:
A. Kotecha, D. Stuart
Date
:
11 Mar 17 (Deposition) - 21 Jun 17 (Release) - 21 Jun 17 (Revision)
Method
:
ELECTRON MICROSCOPY
Resolution
:
3.10
Chains
:
Asym. Unit : A,B,1,2,3,4
Biol. Unit 1: A,B,1,2,3,4 (1x)
Keywords
:
Foot And Mouth Disease Virus, Fmdv, Virus, Opanasia, Virus-Receptor, Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Kotecha, Q. Wang, X. Dong, S. L. Ilca, M. Ondiviela, R. Zihe, J. Seago B. Charleston, E. E. Fry, N. G. A. Abrescia, T. A. Springer, J. T. Huiskonen, D. I. Stuart
Rules Of Engagement Between Alpha V Beta 6 Integrin And Foot-And-Mouth Disease Virus.
Nat Commun V. 8 15408 2017
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Hetero Components
(3, 26)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
2a: ALPHA-D-MANNOSE (MANa)
2b: ALPHA-D-MANNOSE (MANb)
2c: ALPHA-D-MANNOSE (MANc)
2d: ALPHA-D-MANNOSE (MANd)
2e: ALPHA-D-MANNOSE (MANe)
2f: ALPHA-D-MANNOSE (MANf)
2g: ALPHA-D-MANNOSE (MANg)
2h: ALPHA-D-MANNOSE (MANh)
2i: ALPHA-D-MANNOSE (MANi)
2j: ALPHA-D-MANNOSE (MANj)
2k: ALPHA-D-MANNOSE (MANk)
3a: N-ACETYL-D-GLUCOSAMINE (NAGa)
3b: N-ACETYL-D-GLUCOSAMINE (NAGb)
3c: N-ACETYL-D-GLUCOSAMINE (NAGc)
3d: N-ACETYL-D-GLUCOSAMINE (NAGd)
3e: N-ACETYL-D-GLUCOSAMINE (NAGe)
3f: N-ACETYL-D-GLUCOSAMINE (NAGf)
3g: N-ACETYL-D-GLUCOSAMINE (NAGg)
3h: N-ACETYL-D-GLUCOSAMINE (NAGh)
3i: N-ACETYL-D-GLUCOSAMINE (NAGi)
3j: N-ACETYL-D-GLUCOSAMINE (NAGj)
3k: N-ACETYL-D-GLUCOSAMINE (NAGk)
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Label:
No.
Name
Count
Type
Full Name
1
CA
4
Ligand/Ion
CALCIUM ION
2
MAN
11
Ligand/Ion
ALPHA-D-MANNOSE
3
NAG
11
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
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Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLN A:494 , SER A:522 , ASN A:524
binding site for residue NAG A 611
02
AC2
SOFTWARE
ASP A:415 , ASN A:417 , TYR A:419 , ASP A:421 , ALA A:437
binding site for residue CA A 616
03
AC3
SOFTWARE
ASP A:349 , ASP A:351 , ASP A:353 , PHE A:355 , ASP A:357
binding site for residue CA A 617
04
AC4
SOFTWARE
ASP A:230 , ASN A:232 , ASP A:234 , ILE A:236 , ASP A:238
binding site for residue CA A 618
05
AC5
SOFTWARE
ASP A:284 , ASN A:286 , ASP A:288 , TYR A:290 , ASP A:292
binding site for residue CA A 619
06
AC6
SOFTWARE
TYR A:450 , ASN A:455 , ASN A:458 , THR A:460 , CYS A:472 , ASN A:474
binding site for Poly-Saccharide residues NAG A 607 through MAN A 610 bound to ASN A 458
07
AC7
SOFTWARE
ASN B:77 , SER B:79 , ASP B:80
binding site for Mono-Saccharide NAG B 501 bound to ASN B 77
08
AC8
SOFTWARE
ASN A:260 , SER A:262
binding site for Poly-Saccharide residues NAG A 601 through MAN A 603
09
AC9
SOFTWARE
NAG A:601
binding site for Poly-Saccharide residues NAG A 605 through MAN A 606
10
AD1
SOFTWARE
PHE A:558 , PRO A:583 , ALA A:584 , ASN A:585
binding site for Poly-Saccharide residues NAG A 612 through MAN A 615
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SAPs(SNPs)/Variants
(0, 0)
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Exons
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SCOP Domains
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (289 KB)
Header - Asym.Unit
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Header - Biol.Unit 1
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