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5N7M
Asym. Unit
Info
Asym.Unit (109 KB)
Biol.Unit 1 (103 KB)
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(1)
Title
:
PROTRUDING DOMAIN OF GI.1 NOROVIRUS IN COMPLEX WITH 2-FUCOSYLLACTOSE (2FL)
Authors
:
G. S. Hansman, A. D. Koromyslova
Date
:
20 Feb 17 (Deposition) - 24 May 17 (Release) - 24 May 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.73
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Norovirus, Protruding Domain, Human Milk Oligosaccharides, 2Fl, Viral Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Koromyslova, S. Tripathi, V. Morozov, H. Schroten, G. S. Hansman
Human Norovirus Inhibition By A Human Milk Oligosaccharide.
Virology V. 508 81 2017
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Hetero Components
(5, 17)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1b: 1,2-ETHANEDIOL (EDOb)
1c: 1,2-ETHANEDIOL (EDOc)
1d: 1,2-ETHANEDIOL (EDOd)
1e: 1,2-ETHANEDIOL (EDOe)
1f: 1,2-ETHANEDIOL (EDOf)
1g: 1,2-ETHANEDIOL (EDOg)
1h: 1,2-ETHANEDIOL (EDOh)
1i: 1,2-ETHANEDIOL (EDOi)
2a: ALPHA-L-FUCOSE (FUCa)
2b: ALPHA-L-FUCOSE (FUCb)
3a: BETA-D-GALACTOSE (GALa)
3b: BETA-D-GALACTOSE (GALb)
4a: ALPHA-D-GLUCOSE (GLCa)
4b: ALPHA-D-GLUCOSE (GLCb)
5a: SODIUM ION (NAa)
5b: SODIUM ION (NAb)
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Label:
No.
Name
Count
Type
Full Name
1
EDO
9
Ligand/Ion
1,2-ETHANEDIOL
2
FUC
2
Ligand/Ion
ALPHA-L-FUCOSE
3
GAL
2
Ligand/Ion
BETA-D-GALACTOSE
4
GLC
2
Ligand/Ion
ALPHA-D-GLUCOSE
5
NA
2
Ligand/Ion
SODIUM ION
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Sites
(13, 13)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
PHE A:352 , ASN A:394 , GLY A:396 , HOH A:821 , HOH A:898
binding site for residue NA A 601
02
AC2
SOFTWARE
SER A:443 , HIS A:444 , SER A:447 , HOH A:892 , PRO B:234 , GLU B:440 , SER B:443 , HIS B:444 , EDO B:602
binding site for residue EDO A 602
03
AC3
SOFTWARE
ASN A:235 , PRO A:464 , VAL A:502 , HOH A:735 , HOH A:809
binding site for residue EDO A 603
04
AC4
SOFTWARE
GLY A:278 , GLU A:313 , GLY A:314 , HIS A:404 , ALA A:406 , EDO A:606 , HOH A:729 , HOH A:746 , ARG B:275
binding site for residue EDO A 604
05
AC5
SOFTWARE
LEU A:276 , EDO A:608 , HOH A:702
binding site for residue EDO A 605
06
AC6
SOFTWARE
VAL A:277 , GLY A:278 , ALA A:406 , EDO A:604 , HOH A:701 , HOH A:729
binding site for residue EDO A 606
07
AC7
SOFTWARE
LYS A:424 , ALA A:430 , TYR A:431 , ASN A:432 , HOH A:703 , PHE B:335
binding site for residue EDO A 607
08
AC8
SOFTWARE
GLY A:274 , ARG A:275 , LEU A:276 , EDO A:605 , PHE B:312
binding site for residue EDO A 608
09
AC9
SOFTWARE
PHE B:352 , ASN B:394 , GLY B:396 , HOH B:818 , HOH B:894
binding site for residue NA B 601
10
AD1
SOFTWARE
PRO A:234 , LEU A:236 , GLU A:440 , SER A:443 , HIS A:444 , EDO A:602 , SER B:443 , HIS B:444 , SER B:447
binding site for residue EDO B 602
11
AD2
SOFTWARE
PRO B:464 , HOH B:707 , HOH B:737
binding site for residue EDO B 603
12
AD3
SOFTWARE
ASP A:327 , HIS A:329 , GLN A:342 , ASP A:344 , TRP A:375 , SER A:377 , PRO A:378 , HOH A:709 , HOH A:718 , HOH A:737 , HOH A:744 , HOH A:799 , HOH A:855 , HOH A:881
binding site for Poly-Saccharide residues GLC A 609 through FUC A 611
13
AD4
SOFTWARE
LEU A:276 , VAL A:277 , GLY A:278 , GLU A:313 , GLY A:314 , ASP A:327 , HIS A:329 , GLN A:342 , ASP A:344 , TRP A:375 , SER A:377 , PRO A:378 , HIS A:404 , ALA A:406 , EDO A:608 , GLC A:609 , HOH A:701 , HOH A:702 , HOH A:709 , HOH A:718 , HOH A:729 , HOH A:737 , HOH A:744 , HOH A:746 , HOH A:757 , HOH A:799 , HOH A:855 , ARG B:275 , ASP B:327 , HIS B:329 , GLN B:342 , ASP B:344 , TRP B:375 , SER B:377 , PRO B:378 , SER B:380 , HOH B:745 , HOH B:763 , HOH B:771 , HOH B:867
binding site for Poly-Saccharide residues GLC B 604 through FUC B 606
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
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CATH Domains
(0, 0)
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (109 KB)
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