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5N5Y
Asym. Unit
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Asym.Unit (848 KB)
Biol.Unit 1 (829 KB)
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(1)
Title
:
CRYO-EM STRUCTURE OF RNA POLYMERASE I IN COMPLEX WITH RRN3 AND CORE FACTOR (ORIENTATION III)
Authors
:
C. Engel, T. Gubbey, S. Neyer, S. Sainsbury, C. Oberthuer, C. Baejen, C. P. Cramer
Date
:
14 Feb 17 (Deposition) - 05 Apr 17 (Release) - 12 Apr 17 (Revision)
Method
:
ELECTRON MICROSCOPY
Resolution
:
7.70
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R (1x)
Keywords
:
Transcription, Rna Polymerase I Initiation
(Keyword Search:
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Reference
:
C. Engel, T. Gubbey, S. Neyer, S. Sainsbury, C. Oberthuer, C. Baejen, C. Bernecky, P. Cramer
Structural Basis Of Rna Polymerase I Transcription Initiation.
Cell V. 169 120 2017
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Hetero Components
(3, 14)
Info
All Hetero Components
1a: MAGNESIUM ION (MGa)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
2c: SULFATE ION (SO4c)
2d: SULFATE ION (SO4d)
2e: SULFATE ION (SO4e)
3a: ZINC ION (ZNa)
3b: ZINC ION (ZNb)
3c: ZINC ION (ZNc)
3d: ZINC ION (ZNd)
3e: ZINC ION (ZNe)
3f: ZINC ION (ZNf)
3g: ZINC ION (ZNg)
3h: ZINC ION (ZNh)
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No.
Name
Count
Type
Full Name
1
MG
1
Ligand/Ion
MAGNESIUM ION
2
SO4
5
Ligand/Ion
SULFATE ION
3
ZN
8
Ligand/Ion
ZINC ION
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Sites
(14, 14)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
CYS A:62 , CYS A:65 , CYS A:72 , HIS A:75
binding site for residue ZN A 2001
02
AC2
SOFTWARE
CYS A:102 , CYS A:105 , CYS A:233 , CYS A:236
binding site for residue ZN A 2002
03
AC3
SOFTWARE
CYS B:1104 , CYS B:1107 , CYS B:1128 , CYS B:1131
binding site for residue ZN B 2001
04
AC4
SOFTWARE
CYS I:10 , CYS I:13 , CYS I:30 , CYS I:33
binding site for residue ZN I 1001
05
AC5
SOFTWARE
CYS I:86 , CYS I:89 , CYS I:114 , CYS I:117
binding site for residue ZN I 1002
06
AC6
SOFTWARE
CYS J:7 , CYS J:10 , CYS J:45 , CYS J:46
binding site for residue ZN J 1001
07
AC7
SOFTWARE
CYS L:31 , CYS L:34 , CYS L:48 , CYS L:51
binding site for residue ZN L 1001
08
AC8
SOFTWARE
ARG P:603 , LYS Q:271
binding site for residue SO4 P 901
09
AC9
SOFTWARE
HIS P:701 , HIS P:705 , MET Q:123
binding site for residue SO4 P 902
10
AD1
SOFTWARE
GLU P:706 , LYS P:717 , ILE Q:439 , GLU Q:440
binding site for residue SO4 P 903
11
AD2
SOFTWARE
CYS Q:10 , THR Q:12 , CYS Q:15 , CYS Q:29 , HIS Q:33
binding site for residue ZN Q 1001
12
AD3
SOFTWARE
ARG P:472 , LYS Q:360 , MET R:1 , ARG R:211
binding site for residue SO4 Q 1002
13
AD4
SOFTWARE
LYS Q:360 , LYS R:199 , THR R:202 , SER R:203 , GLU R:204 , ARG R:211
binding site for residue SO4 R 601
14
AD5
SOFTWARE
ALA P:396 , SER R:86
binding site for residue MG R 602
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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SCOP Domains
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CATH Domains
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Pfam Domains
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