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5MU8
Asym. Unit
Info
Asym.Unit (2.4 MB)
Biol.Unit 1 (113 KB)
Biol.Unit 10 (117 KB)
Biol.Unit 11 (112 KB)
Biol.Unit 12 (118 KB)
Biol.Unit 13 (116 KB)
Biol.Unit 14 (115 KB)
Biol.Unit 15 (113 KB)
Biol.Unit 16 (115 KB)
Biol.Unit 17 (113 KB)
Biol.Unit 18 (116 KB)
Biol.Unit 19 (114 KB)
Biol.Unit 2 (117 KB)
Biol.Unit 20 (118 KB)
Biol.Unit 21 (115 KB)
Biol.Unit 22 (116 KB)
Biol.Unit 23 (114 KB)
Biol.Unit 24 (115 KB)
Biol.Unit 3 (114 KB)
Biol.Unit 4 (115 KB)
Biol.Unit 5 (114 KB)
Biol.Unit 6 (116 KB)
Biol.Unit 7 (114 KB)
Biol.Unit 8 (118 KB)
Biol.Unit 9 (113 KB)
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Title
:
HUMAN TNF-ALPHA IN COMPLEX WITH JNJ525
Authors
:
J. M. Blevitt, M. D. Hack, K. L. Herman, P. F. Jackson, P. J. Krawczuk, A. D A. X. Liu, T. Mirzadegan, M. I. Nelen, A. P. Patrick, S. Steinbacher, M. K. J. Lumb
Date
:
12 Jan 17 (Deposition) - 29 Mar 17 (Release) - 10 May 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.00
Chains
:
Asym. Unit : A,B,C,D,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,a,b,c,d,e,f,g,h,i,j,k,l,m,n,o,p,q,r,s,t,u,v,w
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: F,G (1x)
Biol. Unit 4: H,I (1x)
Biol. Unit 5: J,K (1x)
Biol. Unit 6: L,M (1x)
Biol. Unit 7: N,O (1x)
Biol. Unit 8: P,Q (1x)
Biol. Unit 9: R,S (1x)
Biol. Unit 10: T,U (1x)
Biol. Unit 11: V,W (1x)
Biol. Unit 12: X,Y (1x)
Biol. Unit 13: Z,a (1x)
Biol. Unit 14: b,c (1x)
Biol. Unit 15: d,e (1x)
Biol. Unit 16: f,g (1x)
Biol. Unit 17: h,i (1x)
Biol. Unit 18: j,k (1x)
Biol. Unit 19: l,m (1x)
Biol. Unit 20: n,o (1x)
Biol. Unit 21: p,q (1x)
Biol. Unit 22: r,s (1x)
Biol. Unit 23: t,u (1x)
Biol. Unit 24: v,w (1x)
Keywords
:
Tumor Necrosis Factor Alpha, Proteros Biostructures Gmbh, Cytokine
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. M. Blevitt, M. D. Hack, K. L. Herman, P. F. Jackson, P. J. Krawczuk, A. D. Lebsack, A. X. Liu, T. Mirzadegan, M. I. Nelen, A. N. Patrick, S. Steinbacher, M. E. Milla, K. J. Lumb
Structural Basis Of Small-Molecule Aggregate Induced Inhibition Of A Protein-Protein Interaction.
J. Med. Chem. V. 60 3511 2017
[
close entry info
]
Hetero Components
(1, 46)
Info
All Hetero Components
1a: ~{N}4-(PHENYLMETHYL)-~{N}4-[2-[3-(... (JNIa)
1aa: ~{N}4-(PHENYLMETHYL)-~{N}4-[2-[3-(... (JNIaa)
1ab: ~{N}4-(PHENYLMETHYL)-~{N}4-[2-[3-(... (JNIab)
1ac: ~{N}4-(PHENYLMETHYL)-~{N}4-[2-[3-(... (JNIac)
1ad: ~{N}4-(PHENYLMETHYL)-~{N}4-[2-[3-(... (JNIad)
1ae: ~{N}4-(PHENYLMETHYL)-~{N}4-[2-[3-(... (JNIae)
1af: ~{N}4-(PHENYLMETHYL)-~{N}4-[2-[3-(... (JNIaf)
1ag: ~{N}4-(PHENYLMETHYL)-~{N}4-[2-[3-(... (JNIag)
1ah: ~{N}4-(PHENYLMETHYL)-~{N}4-[2-[3-(... (JNIah)
1ai: ~{N}4-(PHENYLMETHYL)-~{N}4-[2-[3-(... (JNIai)
1aj: ~{N}4-(PHENYLMETHYL)-~{N}4-[2-[3-(... (JNIaj)
1ak: ~{N}4-(PHENYLMETHYL)-~{N}4-[2-[3-(... (JNIak)
1al: ~{N}4-(PHENYLMETHYL)-~{N}4-[2-[3-(... (JNIal)
1am: ~{N}4-(PHENYLMETHYL)-~{N}4-[2-[3-(... (JNIam)
1an: ~{N}4-(PHENYLMETHYL)-~{N}4-[2-[3-(... (JNIan)
1ao: ~{N}4-(PHENYLMETHYL)-~{N}4-[2-[3-(... (JNIao)
1ap: ~{N}4-(PHENYLMETHYL)-~{N}4-[2-[3-(... (JNIap)
1aq: ~{N}4-(PHENYLMETHYL)-~{N}4-[2-[3-(... (JNIaq)
1ar: ~{N}4-(PHENYLMETHYL)-~{N}4-[2-[3-(... (JNIar)
1as: ~{N}4-(PHENYLMETHYL)-~{N}4-[2-[3-(... (JNIas)
1at: ~{N}4-(PHENYLMETHYL)-~{N}4-[2-[3-(... (JNIat)
1b: ~{N}4-(PHENYLMETHYL)-~{N}4-[2-[3-(... (JNIb)
1c: ~{N}4-(PHENYLMETHYL)-~{N}4-[2-[3-(... (JNIc)
1d: ~{N}4-(PHENYLMETHYL)-~{N}4-[2-[3-(... (JNId)
1e: ~{N}4-(PHENYLMETHYL)-~{N}4-[2-[3-(... (JNIe)
1f: ~{N}4-(PHENYLMETHYL)-~{N}4-[2-[3-(... (JNIf)
1g: ~{N}4-(PHENYLMETHYL)-~{N}4-[2-[3-(... (JNIg)
1h: ~{N}4-(PHENYLMETHYL)-~{N}4-[2-[3-(... (JNIh)
1i: ~{N}4-(PHENYLMETHYL)-~{N}4-[2-[3-(... (JNIi)
1j: ~{N}4-(PHENYLMETHYL)-~{N}4-[2-[3-(... (JNIj)
1k: ~{N}4-(PHENYLMETHYL)-~{N}4-[2-[3-(... (JNIk)
1l: ~{N}4-(PHENYLMETHYL)-~{N}4-[2-[3-(... (JNIl)
1m: ~{N}4-(PHENYLMETHYL)-~{N}4-[2-[3-(... (JNIm)
1n: ~{N}4-(PHENYLMETHYL)-~{N}4-[2-[3-(... (JNIn)
1o: ~{N}4-(PHENYLMETHYL)-~{N}4-[2-[3-(... (JNIo)
1p: ~{N}4-(PHENYLMETHYL)-~{N}4-[2-[3-(... (JNIp)
1q: ~{N}4-(PHENYLMETHYL)-~{N}4-[2-[3-(... (JNIq)
1r: ~{N}4-(PHENYLMETHYL)-~{N}4-[2-[3-(... (JNIr)
1s: ~{N}4-(PHENYLMETHYL)-~{N}4-[2-[3-(... (JNIs)
1t: ~{N}4-(PHENYLMETHYL)-~{N}4-[2-[3-(... (JNIt)
1u: ~{N}4-(PHENYLMETHYL)-~{N}4-[2-[3-(... (JNIu)
1v: ~{N}4-(PHENYLMETHYL)-~{N}4-[2-[3-(... (JNIv)
1w: ~{N}4-(PHENYLMETHYL)-~{N}4-[2-[3-(... (JNIw)
1x: ~{N}4-(PHENYLMETHYL)-~{N}4-[2-[3-(... (JNIx)
1y: ~{N}4-(PHENYLMETHYL)-~{N}4-[2-[3-(... (JNIy)
1z: ~{N}4-(PHENYLMETHYL)-~{N}4-[2-[3-(... (JNIz)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
JNI
46
Ligand/Ion
~{N}4-(PHENYLMETHYL)-~{N}4-[2-[3-(2-PIPERAZIN-1-YLPYRIMIDIN-5-YL)PHENYL]PHENYL]PYRIMIDINE-2,4-DIAMINE
[
close Hetero Component info
]
Sites
(47, 47)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
20: AE2 (SOFTWARE)
21: AE3 (SOFTWARE)
22: AE4 (SOFTWARE)
23: AE5 (SOFTWARE)
24: AE6 (SOFTWARE)
25: AE7 (SOFTWARE)
26: AE8 (SOFTWARE)
27: AE9 (SOFTWARE)
28: AF1 (SOFTWARE)
29: AF2 (SOFTWARE)
30: AF3 (SOFTWARE)
31: AF4 (SOFTWARE)
32: AF5 (SOFTWARE)
33: AF6 (SOFTWARE)
34: AF7 (SOFTWARE)
35: AF8 (SOFTWARE)
36: AF9 (SOFTWARE)
37: AG1 (SOFTWARE)
38: AG2 (SOFTWARE)
39: AG3 (SOFTWARE)
40: AG4 (SOFTWARE)
41: AG5 (SOFTWARE)
42: AG6 (SOFTWARE)
43: AG7 (SOFTWARE)
44: AG8 (SOFTWARE)
45: AG9 (SOFTWARE)
46: AH1 (SOFTWARE)
47: AH2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LEU A:57 , SER A:60 , TYR A:119 , LEU A:120 , GLY A:121 , GLY A:122 , TYR A:151 , ILE A:155 , JNI A:202 , LEU B:57 , TYR B:119 , GLY B:121 , GLY B:122 , JNI C:201
binding site for residue JNI A 201
02
AC2
SOFTWARE
HIS A:15 , JNI A:201 , JNI C:201 , JNI C:202 , JNI D:201
binding site for residue JNI A 202
03
AC3
SOFTWARE
JNI A:201 , JNI A:202 , LEU B:55 , LEU B:157 , TYR C:119 , SER D:60 , GLY D:121 , JNI D:201
binding site for residue JNI C 201
04
AC4
SOFTWARE
SER A:9 , LEU A:36 , JNI A:202 , HIS C:15 , ASN C:34 , LEU C:36 , TYR C:59 , SER C:147
binding site for residue JNI C 202
05
AC5
SOFTWARE
JNI A:202 , JNI C:201 , LEU D:57 , ALA D:156
binding site for residue JNI D 201
06
AC6
SOFTWARE
LEU F:57 , SER F:60 , GLN F:61 , TYR F:119 , LEU F:120 , GLY F:121 , GLY F:122 , TYR F:151 , JNI F:202 , TYR G:119 , GLY G:121 , JNI H:202 , LEU I:157
binding site for residue JNI F 201
07
AC7
SOFTWARE
HIS F:15 , JNI F:201 , JNI H:201 , JNI H:202
binding site for residue JNI F 202
08
AC8
SOFTWARE
JNI F:202 , TYR H:151 , ILE H:155 , JNI H:202 , TYR I:59
binding site for residue JNI H 201
09
AC9
SOFTWARE
JNI F:201 , JNI F:202 , LEU G:55 , LEU G:157 , TYR H:119 , JNI H:201 , TYR I:119 , GLY I:121
binding site for residue JNI H 202
10
AD1
SOFTWARE
LEU J:57 , ILE J:58 , TYR J:59 , SER J:60 , GLN J:61 , TYR J:119 , LEU J:120 , GLY J:121 , GLY J:122 , TYR J:151 , JNI J:202 , LEU K:57 , TYR K:119 , GLY K:121 , JNI L:201
binding site for residue JNI J 201
11
AD2
SOFTWARE
HIS J:15 , JNI J:201 , JNI L:201
binding site for residue JNI J 202
12
AD3
SOFTWARE
JNI J:201 , JNI J:202 , TYR L:119 , LEU L:120 , GLY L:121 , TYR M:59 , TYR M:119 , LEU M:120 , GLY M:121 , JNI M:201
binding site for residue JNI L 201
13
AD4
SOFTWARE
GLY L:121 , TYR L:151 , JNI L:201 , LYS M:11 , LEU M:57 , LEU M:157
binding site for residue JNI M 201
14
AD5
SOFTWARE
LEU N:57 , TYR N:59 , SER N:60 , GLN N:61 , TYR N:119 , LEU N:120 , GLY N:121 , GLY N:122 , TYR N:151 , LEU O:57 , TYR O:119 , GLY O:121 , GLY O:122 , JNI P:201
binding site for residue JNI N 201
15
AD6
SOFTWARE
JNI N:201 , ILE P:155 , JNI P:202 , JNI Q:201
binding site for residue JNI P 201
16
AD7
SOFTWARE
LEU O:157 , TYR P:119 , JNI P:201 , TYR Q:119 , LEU Q:120 , GLY Q:121 , JNI Q:201
binding site for residue JNI P 202
17
AD8
SOFTWARE
LEU P:57 , LEU P:157 , JNI P:201 , JNI P:202 , LYS Q:11 , LEU Q:57 , ALA Q:156
binding site for residue JNI Q 201
18
AD9
SOFTWARE
LEU R:57 , SER R:60 , GLN R:61 , TYR R:119 , GLY R:121 , TYR R:151 , TYR S:119 , GLY S:121
binding site for residue JNI R 201
19
AE1
SOFTWARE
GLY T:121 , TYR T:151 , LYS U:11 , LEU U:57 , TYR U:59 , ALA U:156
binding site for residue JNI U 201
20
AE2
SOFTWARE
LEU V:57 , SER V:60 , GLN V:61 , TYR V:119 , LEU V:120 , TYR V:151 , JNI V:202 , TYR W:119 , GLY W:121 , JNI X:202
binding site for residue JNI V 201
21
AE3
SOFTWARE
HIS V:15 , JNI V:201 , JNI X:201 , JNI X:202
binding site for residue JNI V 202
22
AE4
SOFTWARE
JNI V:202 , LEU X:57 , GLY X:121 , TYR X:151 , JNI X:202 , LYS Y:11 , LEU Y:57 , TYR Y:59 , LEU Y:157
binding site for residue JNI X 201
23
AE5
SOFTWARE
JNI V:201 , JNI V:202 , LEU W:55 , LEU W:157 , TYR X:119 , JNI X:201 , TYR Y:119 , GLY Y:121
binding site for residue JNI X 202
24
AE6
SOFTWARE
LEU Z:57 , SER Z:60 , GLN Z:61 , TYR Z:119 , LEU Z:120 , GLY Z:121 , TYR Z:151 , JNI Z:202 , LEU a:57 , TYR a:119 , GLY a:121 , GLY a:122 , JNI b:202
binding site for residue JNI Z 201
25
AE7
SOFTWARE
JNI Z:201 , JNI b:201
binding site for residue JNI Z 202
26
AE8
SOFTWARE
JNI Z:202 , LEU b:57 , GLY b:121 , TYR b:151 , JNI b:202 , LYS c:11 , LEU c:57 , TYR c:59 , ALA c:156 , LEU c:157
binding site for residue JNI b 201
27
AE9
SOFTWARE
JNI Z:201 , LEU a:55 , LEU a:157 , TYR b:119 , JNI b:201 , TYR c:119
binding site for residue JNI b 202
28
AF1
SOFTWARE
LEU d:57 , TYR d:59 , SER d:60 , GLN d:61 , TYR d:119 , LEU d:120 , TYR d:151 , TYR e:119 , GLY e:121 , JNI f:201
binding site for residue JNI d 201
29
AF2
SOFTWARE
HIS d:15 , JNI d:201 , ILE f:155 , JNI f:202
binding site for residue JNI f 201
30
AF3
SOFTWARE
SER d:9 , ASP d:10 , VAL d:13 , ASN d:39 , ILE d:155 , PRO f:8 , SER f:9 , HIS f:15 , ALA f:33 , ASN f:34 , JNI f:201
binding site for residue JNI f 202
31
AF4
SOFTWARE
LEU h:57 , SER h:60 , TYR h:119 , LEU h:120 , TYR h:151 , LEU i:57 , TYR i:119 , GLY i:121 , JNI j:202 , LYS k:11
binding site for residue JNI h 201
32
AF5
SOFTWARE
JNI j:201
binding site for residue JNI h 202
33
AF6
SOFTWARE
JNI h:202 , GLY j:121 , TYR j:151 , JNI j:202 , LEU k:57 , LEU k:157
binding site for residue JNI j 201
34
AF7
SOFTWARE
JNI h:201 , LEU i:55 , LEU i:157 , TYR j:119 , JNI j:201 , TYR k:119
binding site for residue JNI j 202
35
AF8
SOFTWARE
LEU l:57 , SER l:60 , GLN l:61 , PRO l:117 , TYR l:119 , LEU l:120 , TYR l:151 , TYR m:119 , GLY m:121 , JNI n:201 , JNI n:202
binding site for residue JNI l 201
36
AF9
SOFTWARE
JNI l:201 , JNI o:201
binding site for residue JNI n 201
37
AG1
SOFTWARE
JNI l:201 , LEU m:55 , LEU m:157 , TYR n:119 , TYR o:119 , JNI o:201
binding site for residue JNI n 202
38
AG2
SOFTWARE
TYR n:59 , GLY n:121 , JNI n:201 , JNI n:202 , LYS o:11 , LEU o:57 , ALA o:156 , LEU o:157
binding site for residue JNI o 201
39
AG3
SOFTWARE
LEU p:57 , TYR p:59 , GLN p:61 , TYR p:119 , LEU p:120 , TYR p:151 , JNI p:202 , TYR q:119 , GLY q:121 , JNI r:202
binding site for residue JNI p 201
40
AG4
SOFTWARE
HIS p:15 , JNI p:201 , SER r:9 , VAL r:13 , HIS r:15 , ILE r:155 , JNI r:201 , JNI r:202
binding site for residue JNI p 202
41
AG5
SOFTWARE
JNI p:202 , SER r:60 , GLY r:121 , TYR r:151 , ILE r:155 , JNI r:202 , TYR s:59
binding site for residue JNI r 201
42
AG6
SOFTWARE
JNI p:201 , JNI p:202 , LEU q:55 , LEU q:157 , TYR r:119 , JNI r:201 , TYR s:119
binding site for residue JNI r 202
43
AG7
SOFTWARE
LEU t:57 , SER t:60 , TYR t:119 , LEU t:120 , GLY t:121 , GLY t:122 , TYR t:151 , JNI t:202 , LEU u:57 , TYR u:119 , GLY u:121 , LEU w:157
binding site for residue JNI t 201
44
AG8
SOFTWARE
HIS t:15 , JNI t:201 , SER v:9 , JNI v:201 , JNI v:202
binding site for residue JNI t 202
45
AG9
SOFTWARE
JNI t:202 , TYR v:119 , GLY v:121 , TYR v:151 , JNI v:202 , LEU w:57 , TYR w:59
binding site for residue JNI v 201
46
AH1
SOFTWARE
JNI t:202 , LEU u:55 , LEU u:157 , TYR v:119 , JNI v:201 , TYR w:119
binding site for residue JNI v 202
47
AH2
SOFTWARE
VAL C:91 , GLN D:21 , ALA D:22 , GLY D:24 , GLN D:25 , ASN D:30 , ARG D:31 , ALA D:33 , ASN D:34 , ALA D:35 , SER D:147 , PRO s:20 , ALA s:22 , GLY s:24 , GLN s:25 , ASN s:30 , ARG s:31 , ALA s:33 , ASN s:34 , ALA s:35
binding site for Di-peptide GLU s 23 and ARG D 32
[
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SAPs(SNPs)/Variants
(0, 0)
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Asym.Unit (2.4 MB)
Header - Asym.Unit
Biol.Unit 1 (113 KB)
Header - Biol.Unit 1
Biol.Unit 10 (117 KB)
Header - Biol.Unit 10
Biol.Unit 11 (112 KB)
Header - Biol.Unit 11
Biol.Unit 12 (118 KB)
Header - Biol.Unit 12
Biol.Unit 13 (116 KB)
Header - Biol.Unit 13
Biol.Unit 14 (115 KB)
Header - Biol.Unit 14
Biol.Unit 15 (113 KB)
Header - Biol.Unit 15
Biol.Unit 16 (115 KB)
Header - Biol.Unit 16
Biol.Unit 17 (113 KB)
Header - Biol.Unit 17
Biol.Unit 18 (116 KB)
Header - Biol.Unit 18
Biol.Unit 19 (114 KB)
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Biol.Unit 2 (117 KB)
Header - Biol.Unit 2
Biol.Unit 20 (118 KB)
Header - Biol.Unit 20
Biol.Unit 21 (115 KB)
Header - Biol.Unit 21
Biol.Unit 22 (116 KB)
Header - Biol.Unit 22
Biol.Unit 23 (114 KB)
Header - Biol.Unit 23
Biol.Unit 24 (115 KB)
Header - Biol.Unit 24
Biol.Unit 3 (114 KB)
Header - Biol.Unit 3
Biol.Unit 4 (115 KB)
Header - Biol.Unit 4
Biol.Unit 5 (114 KB)
Header - Biol.Unit 5
Biol.Unit 6 (116 KB)
Header - Biol.Unit 6
Biol.Unit 7 (114 KB)
Header - Biol.Unit 7
Biol.Unit 8 (118 KB)
Header - Biol.Unit 8
Biol.Unit 9 (113 KB)
Header - Biol.Unit 9
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