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5MFR
Asym. Unit
Info
Asym.Unit (582 KB)
Biol.Unit 1 (573 KB)
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(1)
Title
:
THE CRYSTAL STRUCTURE OF E. COLI AMINOPEPTIDASE N IN COMPLEX WITH 7-AMINO-5,7,8,9-TETRAHYDROBENZOCYCLOHEPTEN-6-ONE
Authors
:
G. Peng, V. Olieric, A. G. Mcewen, C. Schmitt, S. Albrecht, J. Cavarelli
Date
:
18 Nov 16 (Deposition) - 19 Apr 17 (Release) - 19 Apr 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.40
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
M1 Aminopeptidase, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
G. Peng, A. G. Mcewen, V. Olieric, C. Schmitt, S. Albrecht, J. Cavarelli, C. Tarnus
Insight Into The Remarkable Affinity And Selectivity Of The Aminobenzosuberone Scaffold For The M1 Aminopeptidases Family Based On Structure Analysis.
Proteins 2017
[
close entry info
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Hetero Components
(7, 29)
Info
All Hetero Components
1a: [(7~{S})-6,6-BIS(OXIDANYL)-5,7,8,9... (7MKa)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
2c: CHLORIDE ION (CLc)
3a: DIMETHYL SULFOXIDE (DMSa)
3b: DIMETHYL SULFOXIDE (DMSb)
4a: GLYCEROL (GOLa)
4b: GLYCEROL (GOLb)
4c: GLYCEROL (GOLc)
4d: GLYCEROL (GOLd)
4e: GLYCEROL (GOLe)
4f: GLYCEROL (GOLf)
4g: GLYCEROL (GOLg)
4h: GLYCEROL (GOLh)
4i: GLYCEROL (GOLi)
4j: GLYCEROL (GOLj)
5a: MALONATE ION (MLIa)
5b: MALONATE ION (MLIb)
5c: MALONATE ION (MLIc)
5d: MALONATE ION (MLId)
6a: SODIUM ION (NAa)
6b: SODIUM ION (NAb)
6c: SODIUM ION (NAc)
6d: SODIUM ION (NAd)
6e: SODIUM ION (NAe)
6f: SODIUM ION (NAf)
6g: SODIUM ION (NAg)
6h: SODIUM ION (NAh)
7a: ZINC ION (ZNa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
7MK
1
Ligand/Ion
[(7~{S})-6,6-BIS(OXIDANYL)-5,7,8,9-TETRAHYDROBENZO[7]ANNULEN-7-YL]AZANIUM
2
CL
3
Ligand/Ion
CHLORIDE ION
3
DMS
2
Ligand/Ion
DIMETHYL SULFOXIDE
4
GOL
10
Ligand/Ion
GLYCEROL
5
MLI
4
Ligand/Ion
MALONATE ION
6
NA
8
Ligand/Ion
SODIUM ION
7
ZN
1
Ligand/Ion
ZINC ION
[
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]
Sites
(29, 29)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
20: AE2 (SOFTWARE)
21: AE3 (SOFTWARE)
22: AE4 (SOFTWARE)
23: AE5 (SOFTWARE)
24: AE6 (SOFTWARE)
25: AE7 (SOFTWARE)
26: AE8 (SOFTWARE)
27: AE9 (SOFTWARE)
28: AF1 (SOFTWARE)
29: AF2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:297 , HIS A:301 , GLU A:320 , 7MK A:1002 , GOL A:1011
binding site for residue ZN A 1001
02
AC2
SOFTWARE
GLU A:121 , MET A:260 , ALA A:262 , GLU A:264 , HIS A:297 , GLU A:298 , HIS A:301 , LYS A:319 , GLU A:320 , TYR A:381 , ZN A:1001 , GOL A:1011 , MLI A:1021 , MLI A:1022 , HOH A:1358 , HOH A:1672 , HOH A:2243 , HOH A:2536
binding site for residue 7MK A 1002
03
AC3
SOFTWARE
ASN A:623 , GLY A:791 , ARG A:832 , HOH A:1119 , HOH A:1229 , HOH A:1232
binding site for residue GOL A 1003
04
AC4
SOFTWARE
GLU A:292 , VAL A:670 , HIS A:672 , GOL A:1009 , HOH A:1387 , HOH A:1869 , HOH A:2341 , HOH A:2650
binding site for residue GOL A 1004
05
AC5
SOFTWARE
PHE A:704 , ALA A:707 , LYS A:738 , TRP A:739 , HOH A:1120 , HOH A:1267 , HOH A:1780
binding site for residue GOL A 1005
06
AC6
SOFTWARE
LEU A:61 , VAL A:62 , ARG A:669 , GLU A:671 , HOH A:1239 , HOH A:1310 , HOH A:2074 , HOH A:2108 , HOH A:2130 , HOH A:2789
binding site for residue GOL A 1006
07
AC7
SOFTWARE
ASP A:58 , LEU A:59 , GLU A:97 , ILE A:98 , SER A:99 , HOH A:1492 , HOH A:1734 , HOH A:1938 , HOH A:2081 , HOH A:2216
binding site for residue GOL A 1007
08
AC8
SOFTWARE
HIS A:11 , ASP A:12 , ARG A:14 , ARG A:468 , THR A:469 , LYS A:478 , GLN A:479 , HOH A:1138 , HOH A:1401 , HOH A:1825 , HOH A:1845 , HOH A:2289 , HOH A:2761
binding site for residue GOL A 1008
09
AC9
SOFTWARE
TRP A:74 , GLU A:671 , GOL A:1004 , HOH A:1187 , HOH A:1902 , HOH A:2789
binding site for residue GOL A 1009
10
AD1
SOFTWARE
MET A:368 , PRO A:473 , ASP A:474 , ALA A:476 , HOH A:1126 , HOH A:1279 , HOH A:1395 , HOH A:1534 , HOH A:1587 , HOH A:1913
binding site for residue GOL A 1010
11
AD2
SOFTWARE
GLU A:121 , ALA A:262 , GLU A:264 , HIS A:297 , GLU A:298 , HIS A:301 , LYS A:319 , GLU A:320 , TYR A:381 , ZN A:1001 , 7MK A:1002 , MLI A:1021 , HOH A:1358 , HOH A:1672 , HOH A:2536
binding site for residue GOL A 1011
12
AD3
SOFTWARE
LYS A:541 , GLU A:627 , PHE A:629 , ASP A:630 , ARG A:835 , HOH A:1673 , HOH A:2324
binding site for residue GOL A 1012
13
AD4
SOFTWARE
SER A:332 , ASP A:333 , GLY A:335 , HOH A:1970 , HOH A:2209 , HOH A:2332
binding site for residue NA A 1013
14
AD5
SOFTWARE
HIS A:771 , PHE A:774 , HOH A:1400 , HOH A:1633 , HOH A:2196 , HOH A:2222
binding site for residue NA A 1014
15
AD6
SOFTWARE
SER A:508 , HOH A:1924 , HOH A:1999 , HOH A:2163 , HOH A:2359 , HOH A:2835
binding site for residue NA A 1015
16
AD7
SOFTWARE
ASP A:452 , HOH A:1149 , HOH A:1263 , HOH A:2265 , HOH A:2283 , HOH A:2692
binding site for residue NA A 1016
17
AD8
SOFTWARE
GLU A:123 , GLU A:371 , HOH A:1159 , HOH A:1273 , HOH A:1418 , HOH A:1597 , HOH A:2317
binding site for residue NA A 1017
18
AD9
SOFTWARE
ASN A:67 , THR A:91 , HOH A:2246 , HOH A:2394 , HOH A:2409
binding site for residue NA A 1018
19
AE1
SOFTWARE
ASP A:452 , TYR A:544 , HOH A:1535 , HOH A:2340 , HOH A:2504
binding site for residue NA A 1019
20
AE2
SOFTWARE
MET A:260 , ASN A:373 , GLN A:821 , HOH A:1591 , HOH A:1701 , HOH A:2146
binding site for residue NA A 1020
21
AE3
SOFTWARE
TYR A:275 , ARG A:293 , HIS A:297 , GLU A:298 , 7MK A:1002 , GOL A:1011 , MLI A:1022 , HOH A:1165 , HOH A:1669 , HOH A:2536
binding site for residue MLI A 1021
22
AE4
SOFTWARE
TYR A:376 , THR A:377 , LEU A:378 , TYR A:381 , GLU A:382 , ARG A:825 , 7MK A:1002 , MLI A:1021 , HOH A:1165
binding site for residue MLI A 1022
23
AE5
SOFTWARE
LYS A:8 , GLU A:123 , TRP A:313 , PHE A:314 , VAL A:369 , MET A:372 , HOH A:1136 , HOH A:1159 , HOH A:1193 , HOH A:1929
binding site for residue MLI A 1023
24
AE6
SOFTWARE
ASP A:28 , LEU A:29 , ASP A:30 , LYS A:33 , VAL A:35 , ARG A:171 , HOH A:1116 , HOH A:1178 , HOH A:2039
binding site for residue MLI A 1024
25
AE7
SOFTWARE
THR A:393 , LEU A:394 , LEU A:395 , GLY A:396 , ASN A:507 , HOH A:1859
binding site for residue DMS A 1025
26
AE8
SOFTWARE
THR A:393 , GLU A:535 , HOH A:1166 , HOH A:2131
binding site for residue DMS A 1026
27
AE9
SOFTWARE
ASP A:216 , ALA A:254 , SER A:273 , HOH A:1661
binding site for residue CL A 1027
28
AF1
SOFTWARE
ASN A:560 , ASP A:561 , HOH A:2466
binding site for residue CL A 1028
29
AF2
SOFTWARE
ALA A:31 , GLN A:32 , HOH A:2039
binding site for residue CL A 1029
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
Info
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Exons
(0, 0)
Info
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SCOP Domains
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CATH Domains
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Pfam Domains
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Chain A
Asymmetric Unit 1
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