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5MFQ
Asym. Unit
Info
Asym.Unit (187 KB)
Biol.Unit 1 (181 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE GLUK1 LIGAND-BINDING DOMAIN IN COMPLEX WITH KAINATE AND BPAM-344 AT 1.90 A RESOLUTION
Authors
:
A. P. Larsen, K. Frydenvang, J. S. Kastrup
Date
:
18 Nov 16 (Deposition) - 12 Apr 17 (Release) - 10 May 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Ionotropic Glutamate Receptor, Gluk1 Ligand-Binding Domain, Membrane Protein, Positive Allosteric Modulator
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. P. Larsen, S. Fievre, K. Frydenvang, P. Francotte, B. Pirotte, J. S. Kastrup, C. Mulle
Identification And Structure-Function Study Of Positive Allosteric Modulators Of Kainate Receptors.
Mol. Pharmacol. V. 91 576 2017
(for further references see the
PDB file header
)
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Hetero Components
(5, 10)
Info
All Hetero Components
1a: 4-CYCLOPROPYL-7-FLUORO-3,4-DIHYDRO... (2J9a)
1b: 4-CYCLOPROPYL-7-FLUORO-3,4-DIHYDRO... (2J9b)
2a: CHLORIDE ION (CLa)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
3c: GLYCEROL (GOLc)
4a: 3-(CARBOXYMETHYL)-4-ISOPROPENYLPRO... (KAIa)
4b: 3-(CARBOXYMETHYL)-4-ISOPROPENYLPRO... (KAIb)
5a: SULFATE ION (SO4a)
5b: SULFATE ION (SO4b)
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No.
Name
Count
Type
Full Name
1
2J9
2
Ligand/Ion
4-CYCLOPROPYL-7-FLUORO-3,4-DIHYDRO-2H-1,2,4-BENZOTHIADIAZINE 1,1-DIOXIDE
2
CL
1
Ligand/Ion
CHLORIDE ION
3
GOL
3
Ligand/Ion
GLYCEROL
4
KAI
2
Ligand/Ion
3-(CARBOXYMETHYL)-4-ISOPROPENYLPROLINE
5
SO4
2
Ligand/Ion
SULFATE ION
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Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
PRO A:532 , THR A:535 , SER A:761 , LYS A:762 , GLY A:763 , LYS B:531 , PRO B:532 , PHE B:533 , MET B:534 , THR B:535 , LEU B:783 , LEU B:791
binding site for residue 2J9 A 901
02
AC2
SOFTWARE
LYS A:531 , PRO A:532 , PHE A:533 , MET A:534 , THR A:535 , LEU A:783 , LEU A:791 , ILE B:519 , PRO B:532 , THR B:535 , SER B:761 , LYS B:762 , GLY B:763
binding site for residue 2J9 A 902
03
AC3
SOFTWARE
GLU A:441 , TYR A:489 , PRO A:516 , THR A:518 , ARG A:523 , GLY A:688 , SER A:689 , THR A:690 , GLU A:738 , HOH A:1024 , HOH A:1060 , HOH A:1077
binding site for residue KAI A 903
04
AC4
SOFTWARE
LYS A:531 , HOH A:1083 , LYS B:531 , HOH B:1116
binding site for residue CL A 904
05
AC5
SOFTWARE
LYS A:488 , TYR A:489 , GLY A:490 , ALA A:491 , ARG A:686 , ASP A:687 , HOH A:1069 , HOH A:1145 , HOH A:1167
binding site for residue GOL A 905
06
AC6
SOFTWARE
GLU A:442 , SER A:721 , ASP A:722 , MET A:737 , SER A:741 , HOH A:1014
binding site for residue GOL A 906
07
AC7
SOFTWARE
HOH A:1132 , ARG B:448 , SER B:450 , LYS B:452
binding site for residue SO4 A 907
08
AC8
SOFTWARE
GLU B:441 , TYR B:489 , PRO B:516 , THR B:518 , ARG B:523 , GLY B:688 , SER B:689 , THR B:690 , GLU B:738 , HOH B:1016 , HOH B:1056 , HOH B:1099
binding site for residue KAI B 901
09
AC9
SOFTWARE
HOH A:1085 , ARG B:459 , LYS B:482 , HOH B:1006 , HOH B:1007 , HOH B:1058 , HOH B:1235
binding site for residue GOL B 902
10
AD1
SOFTWARE
ARG A:459 , LYS A:482 , HOH A:1040 , HOH B:1066 , HOH B:1206
binding site for residue SO4 B 903
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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Exons
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Asym.Unit (187 KB)
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