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5MFA
Asym. Unit
Info
Asym.Unit (345 KB)
Biol.Unit 1 (336 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN PROMYELOPEROXIDASE (PROMPO)
Authors
:
I. Grishkovskaya, P. G. Furtmueller, C. Obinger, K. Djinovic-Carugo
Date
:
17 Nov 16 (Deposition) - 05 Apr 17 (Release) - 31 May 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.20
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Myeloperoxidase, Prompo, Biosynthesis, Proteolytic Maturation, Halide Oxidation, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
I. Grishkovskaya, M. Paumann-Page, R. Tscheliessnig, J. Stampler, S. Hofbauer, M. Soudi, B. Sevcnikar, C. Oostenbrink, P. G. Furtmuller K. Djinovic-Carugo, W. M. Nauseef, C. Obinger
Structure Of Human Promyeloperoxidase (Prompo) And The Role Of The Propeptide In Processing And Maturation.
J. Biol. Chem. V. 292 8244 2017
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Hetero Components
(9, 25)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
2a: CALCIUM ION (CAa)
3a: CHLORIDE ION (CLa)
3b: CHLORIDE ION (CLb)
3c: CHLORIDE ION (CLc)
3d: CHLORIDE ION (CLd)
3e: CHLORIDE ION (CLe)
4a: S-HYDROXYCYSTEINE (CSOa)
5a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
6a: ALPHA-D-MANNOSE (MANa)
6b: ALPHA-D-MANNOSE (MANb)
7a: N-ACETYL-D-GLUCOSAMINE (NAGa)
7b: N-ACETYL-D-GLUCOSAMINE (NAGb)
7c: N-ACETYL-D-GLUCOSAMINE (NAGc)
7d: N-ACETYL-D-GLUCOSAMINE (NAGd)
7e: N-ACETYL-D-GLUCOSAMINE (NAGe)
7f: N-ACETYL-D-GLUCOSAMINE (NAGf)
7g: N-ACETYL-D-GLUCOSAMINE (NAGg)
7h: N-ACETYL-D-GLUCOSAMINE (NAGh)
8a: DI(HYDROXYETHYL)ETHER (PEGa)
8b: DI(HYDROXYETHYL)ETHER (PEGb)
8c: DI(HYDROXYETHYL)ETHER (PEGc)
8d: DI(HYDROXYETHYL)ETHER (PEGd)
8e: DI(HYDROXYETHYL)ETHER (PEGe)
9a: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSa)
View:
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Label:
No.
Name
Count
Type
Full Name
1
BMA
1
Ligand/Ion
BETA-D-MANNOSE
2
CA
1
Ligand/Ion
CALCIUM ION
3
CL
5
Ligand/Ion
CHLORIDE ION
4
CSO
1
Mod. Amino Acid
S-HYDROXYCYSTEINE
5
HEM
1
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
6
MAN
2
Ligand/Ion
ALPHA-D-MANNOSE
7
NAG
8
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
8
PEG
5
Ligand/Ion
DI(HYDROXYETHYL)ETHER
9
TRS
1
Ligand/Ion
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
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Sites
(18, 18)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
MET A:253 , GLY A:256 , GLN A:257 , ASP A:260 , ASP A:264 , PHE A:265 , THR A:266 , ARG A:405 , GLU A:408 , MET A:409 , THR A:495 , PHE A:498 , ARG A:499 , GLY A:501 , HIS A:502 , LEU A:583 , ARG A:590 , HOH A:961 , HOH A:1010 , HOH A:1104 , HOH A:1112
binding site for residue HEM A 812
02
AC2
SOFTWARE
ASP A:262 , THR A:334 , PHE A:336 , ASP A:338 , SER A:340
binding site for residue CA A 813
03
AC3
SOFTWARE
ARG A:197 , TRP A:198 , ASN A:492 , VAL A:493 , TRP A:602
binding site for residue CL A 814
04
AC4
SOFTWARE
ASN A:623 , HOH A:925
binding site for residue CL A 815
05
AC5
SOFTWARE
PRO A:290 , ARG A:327
binding site for residue CL A 816
06
AC6
SOFTWARE
ASN A:366 , GLN A:367 , PHE A:379
binding site for residue CL A 817
07
AC7
SOFTWARE
ARG A:548 , ILE A:709 , THR A:710 , HOH A:949
binding site for residue CL A 818
08
AC8
SOFTWARE
LYS A:474 , ARG A:670 , MET A:688 , PEG A:822 , HOH A:1143
binding site for residue PEG A 819
09
AC9
SOFTWARE
GLN A:610 , GLN A:616 , PEG A:821 , HOH A:1144
binding site for residue PEG A 820
10
AD1
SOFTWARE
GLN A:616 , PEG A:820 , HOH A:1144
binding site for residue PEG A 821
11
AD2
SOFTWARE
TYR A:475 , PHE A:605 , PEG A:819 , HOH A:1003 , HOH A:1143
binding site for residue PEG A 822
12
AD3
SOFTWARE
ARG A:392 , GLU A:574 , GLN A:575 , MET A:577 , ARG A:578 , HOH A:932 , HOH A:963
binding site for residue PEG A 823
13
AD4
SOFTWARE
MET A:577 , HOH A:954 , HOH A:1107
binding site for residue TRS A 824
14
AD5
SOFTWARE
ASN A:323 , PRO A:724 , PHE A:727 , VAL A:728 , ASN A:729 , HOH A:1340
binding site for Mono-Saccharide NAG A 801 bound to ASN A 323
15
AD6
SOFTWARE
ASN A:355 , ASN A:358 , ALA A:364 , VAL A:365 , GLN A:367 , ARG A:368 , GLN A:370 , HOH A:905 , HOH A:978 , HOH A:1027 , HOH A:1177 , HOH A:1268 , HOH A:1318 , HOH A:1413
binding site for Poly-Saccharide residues NAG A 807 through MAN A 811 bound to ASN A 355
16
AD7
SOFTWARE
ASN A:391 , TRP A:535 , LEU A:539 , HOH A:1073 , HOH A:1158 , HOH A:1365 , HOH A:1411
binding site for Poly-Saccharide residues NAG A 802 through NAG A 803 bound to ASN A 391
17
AD8
SOFTWARE
ASN A:483 , SER A:485 , HOH A:1211 , HOH A:1429 , HOH A:1631
binding site for Poly-Saccharide residues NAG A 804 through NAG A 805 bound to ASN A 483
18
AD9
SOFTWARE
ASN A:729 , SER A:731 , HOH A:947
binding site for Mono-Saccharide NAG A 806 bound to ASN A 729
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SAPs(SNPs)/Variants
(0, 0)
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Exons
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SCOP Domains
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Chain A
Asymmetric Unit 1
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Asym.Unit (345 KB)
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