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5MF6
Biol. Unit 1
Info
Asym.Unit (104 KB)
Biol.Unit 1 (51 KB)
Biol.Unit 2 (50 KB)
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(1)
Title
:
HUMAN SIRT6 IN COMPLEX WITH ACTIVATOR UBCS039
Authors
:
C. Steegborn, W. You, C. Kambach
Date
:
17 Nov 16 (Deposition) - 28 Dec 16 (Release) - 25 Jan 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.87
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
4-(Pyridin-3-Yl)-4, 5-Dihydropyrrolo[1, 2-A]Quinoxaline, Dihydropyrrol, Drug, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
W. You, D. Rotili, T. M. Li, C. Kambach, M. Meleshin, M. Schutkowski, K. F. Chua, A. Mai, C. Steegborn
Structural Basis Of Sirtuin 6 Activation By Synthetic Small Molecules.
Angew. Chem. Int. Ed. Engl. V. 56 1007 2017
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Hetero Components
(5, 9)
Info
All Hetero Components
1a: (4~{R})-4-PYRIDIN-3-YL-4,5-DIHYDRO... (7M2a)
1b: (4~{R})-4-PYRIDIN-3-YL-4,5-DIHYDRO... (7M2b)
2a: [(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-Y... (AR6a)
2b: [(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-Y... (AR6b)
3a: 1,2-ETHANEDIOL (EDOa)
3b: 1,2-ETHANEDIOL (EDOb)
3c: 1,2-ETHANEDIOL (EDOc)
4a: TRIETHYLENE GLYCOL (PGEa)
5a: SULFATE ION (SO4a)
5b: SULFATE ION (SO4b)
5c: SULFATE ION (SO4c)
5d: SULFATE ION (SO4d)
5e: SULFATE ION (SO4e)
5f: SULFATE ION (SO4f)
5g: SULFATE ION (SO4g)
5h: SULFATE ION (SO4h)
6a: ZINC ION (ZNa)
6b: ZINC ION (ZNb)
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No.
Name
Count
Type
Full Name
1
7M2
1
Ligand/Ion
(4~{R})-4-PYRIDIN-3-YL-4,5-DIHYDROPYRROLO[1,2-A]QUINOXALINE
2
AR6
1
Ligand/Ion
[(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4-DIHYDROXY-OXOLAN-2-YL]METHYL [HYDROXY-[[(2R,3S,4R,5S)-3,4,5-TRIHYDROXYOXOLAN-2-YL]METHOXY]PHOSPHORYL] HYDROGENPHOSPHATE
3
EDO
2
Ligand/Ion
1,2-ETHANEDIOL
4
PGE
1
Ligand/Ion
TRIETHYLENE GLYCOL
5
SO4
4
Ligand/Ion
SULFATE ION
6
ZN
-1
Ligand/Ion
ZINC ION
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD4 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLY A:52 , ALA A:53 , GLY A:54 , THR A:57 , ASP A:63 , PHE A:64 , ARG A:65 , TRP A:71 , GLN A:113 , HIS A:133 , GLY A:214 , THR A:215 , SER A:216 , ILE A:219 , ASN A:240 , LEU A:241 , GLN A:242 , GLY A:256 , TYR A:257 , VAL A:258 , PGE A:409 , HOH A:501 , HOH A:508 , HOH A:523 , HOH A:547 , HOH A:579 , HOH A:584 , ASP B:83 , HOH B:521
binding site for residue AR6 A 401
02
AC2
SOFTWARE
CYS A:141 , CYS A:144 , CYS A:166 , CYS A:177
binding site for residue ZN A 402
03
AC3
SOFTWARE
HIS A:68 , LYS A:81 , HOH A:503 , HOH A:507 , HOH A:542 , HIS B:68
binding site for residue SO4 A 403
04
AC4
SOFTWARE
VAL A:154 , GLY A:155 , ARG A:164 , LYS A:296
binding site for residue SO4 A 404
05
AC5
SOFTWARE
LYS A:33 , ARG A:253 , HIS A:255 , HOH A:529
binding site for residue SO4 A 405
06
AC6
SOFTWARE
ARG A:220 , PRO A:221 , ASN A:224
binding site for residue SO4 A 406
07
AC7
SOFTWARE
PHE A:24 , TYR A:257 , HOH A:549 , THR B:84
binding site for residue EDO A 407
08
AC8
SOFTWARE
PHE A:82 , THR A:84 , TYR B:257
binding site for residue EDO A 408
09
AC9
SOFTWARE
LEU A:186 , LEU A:192 , ARG A:220 , AR6 A:401
binding site for residue PGE A 409
10
AD1
SOFTWARE
ILE A:61 , PRO A:62 , PHE A:64 , PHE A:86 , HOH A:558
binding site for residue 7M2 A 410
11
AD2
SOFTWARE
ASP A:83 , HOH A:519 , GLY B:52 , ALA B:53 , GLY B:54 , THR B:57 , ASP B:63 , PHE B:64 , ARG B:65 , TRP B:71 , GLN B:113 , HIS B:133 , TRP B:188 , GLY B:214 , THR B:215 , SER B:216 , ILE B:219 , ASN B:240 , LEU B:241 , GLN B:242 , GLY B:256 , TYR B:257 , VAL B:258 , EDO B:407 , HOH B:502 , HOH B:512 , HOH B:537 , HOH B:540 , HOH B:555
binding site for residue AR6 B 401
12
AD4
SOFTWARE
ARG A:90 , ALA A:275 , TRP A:276 , HOH A:513 , ARG B:90 , ALA B:275 , TRP B:276 , HOH B:501 , HOH B:525
binding site for residue SO4 B 403
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SAPs(SNPs)/Variants
(0, 0)
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Exons
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SCOP Domains
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Chain A
Asymmetric Unit 1
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