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5M92
Asym. Unit
Info
Asym.Unit (313 KB)
Biol.Unit 1 (302 KB)
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(1)
Title
:
PCE REDUCTIVE DEHALOGENASE FROM S. MULTIVORANS IN COMPLEX WITH 2,4-DIBROMOPHENOL
Authors
:
C. Kunze, M. Bommer, W. R. Hagen, M. Uksa, H. Dobbek, T. Schubert, G. Diek
Date
:
31 Oct 16 (Deposition) - 12 Jul 17 (Release) - 12 Jul 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.79
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Organohalide Respiration Anaerobic Crystallisation Cobalamin, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. Kunze, M. Bommer, W. R. Hagen, M. Uksa, H. Dobbek, T. Schubert, G. Diekert
Cobamide-Mediated Enzymatic Reductive Dehalogenation Via Long-Range Electron Transfer.
Nat Commun V. 8 15858 2017
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Hetero Components
(6, 21)
Info
All Hetero Components
1a: BENZAMIDINE (BENa)
1b: BENZAMIDINE (BENb)
1c: BENZAMIDINE (BENc)
2a: BROMIDE ION (BRa)
3a: NORPSEUDO-B12 (BVQa)
3b: NORPSEUDO-B12 (BVQb)
4a: GLYCEROL (GOLa)
4b: GLYCEROL (GOLb)
4c: GLYCEROL (GOLc)
4d: GLYCEROL (GOLd)
4e: GLYCEROL (GOLe)
4f: GLYCEROL (GOLf)
4g: GLYCEROL (GOLg)
5a: IRON/SULFUR CLUSTER (SF4a)
5b: IRON/SULFUR CLUSTER (SF4b)
5c: IRON/SULFUR CLUSTER (SF4c)
5d: IRON/SULFUR CLUSTER (SF4d)
6a: 2,4-BIS(BROMANYL)PHENOL (Y8Ia)
6b: 2,4-BIS(BROMANYL)PHENOL (Y8Ib)
6c: 2,4-BIS(BROMANYL)PHENOL (Y8Ic)
6d: 2,4-BIS(BROMANYL)PHENOL (Y8Id)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BEN
3
Ligand/Ion
BENZAMIDINE
2
BR
1
Ligand/Ion
BROMIDE ION
3
BVQ
2
Ligand/Ion
NORPSEUDO-B12
4
GOL
7
Ligand/Ion
GLYCEROL
5
SF4
4
Ligand/Ion
IRON/SULFUR CLUSTER
6
Y8I
4
Ligand/Ion
2,4-BIS(BROMANYL)PHENOL
[
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Sites
(21, 21)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
20: AE2 (SOFTWARE)
21: AE3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
SER A:290 , ARG A:291 , MET A:292 , CYS A:329 , CYS A:332 , LYS A:333 , CYS A:335 , CYS A:390
binding site for residue SF4 A 501
02
AC2
SOFTWARE
CYS A:339 , PRO A:340 , SER A:341 , CYS A:372 , CYS A:383 , GLY A:384 , CYS A:386 , BVQ A:503
binding site for residue SF4 A 502
03
AC3
SOFTWARE
ILE A:22 , TYR A:31 , THR A:36 , ALA A:37 , PHE A:38 , TYR A:170 , THR A:242 , TYR A:246 , MET A:249 , ASN A:272 , GLY A:275 , GLN A:276 , SER A:277 , VAL A:278 , ALA A:279 , ALA A:289 , MET A:292 , GLY A:293 , ALA A:294 , CYS A:295 , PRO A:302 , VAL A:304 , ARG A:305 , LEU A:306 , HIS A:357 , ASN A:358 , GLN A:359 , LYS A:362 , GLN A:364 , TYR A:369 , CYS A:372 , TRP A:376 , TYR A:382 , VAL A:387 , SF4 A:502 , Y8I A:512 , HOH A:605 , HOH A:618 , HOH A:697 , HOH A:740 , HOH A:744 , HOH A:792
binding site for residue BVQ A 503
04
AC4
SOFTWARE
THR A:39 , PHE A:44 , GLU A:189 , ASP A:408 , GOL A:505 , BEN A:511
binding site for residue BEN A 504
05
AC5
SOFTWARE
THR A:39 , ASN A:101 , GLU A:189 , BEN A:504 , HOH A:839 , HOH A:853
binding site for residue GOL A 505
06
AC6
SOFTWARE
PHE A:110 , LEU A:113 , MET A:119 , MET A:254 , HOH A:632 , HOH A:643 , HOH A:725 , HOH A:752 , HOH A:775 , PHE B:111
binding site for residue GOL A 506
07
AC7
SOFTWARE
GLU A:330 , PRO A:348 , ARG A:349 , HOH A:635 , HOH A:669 , HOH A:745 , BEN B:505
binding site for residue GOL A 507
08
AC8
SOFTWARE
ARG A:349 , THR A:350 , HOH A:721 , HOH A:784 , GLU B:172 , GLU B:191 , HOH B:622
binding site for residue GOL A 508
09
AC9
SOFTWARE
ASP A:322 , HOH A:651 , PHE B:45
binding site for residue GOL A 509
10
AD1
SOFTWARE
PHE A:111 , HOH A:631 , HOH A:675 , HOH A:699 , PHE B:110 , LEU B:113 , MET B:119 , HOH B:654
binding site for residue GOL A 510
11
AD2
SOFTWARE
VAL A:34 , THR A:39 , GLU A:189 , BEN A:504
binding site for residue BEN A 511
12
AD3
SOFTWARE
PHE A:38 , TRP A:56 , TYR A:102 , THR A:242 , TYR A:246 , ASN A:272 , TRP A:376 , TYR A:382 , BVQ A:503 , HOH A:605
binding site for residue Y8I A 512
13
AD4
SOFTWARE
PHE A:57 , LEU A:186 , HIS A:187 , HOH A:1017 , LEU B:124
binding site for residue Y8I A 513
14
AD5
SOFTWARE
PHE A:44 , LEU A:186
binding site for residue BR A 514
15
AD6
SOFTWARE
ARG B:291 , MET B:292 , PHE B:328 , CYS B:329 , CYS B:332 , LYS B:333 , CYS B:335 , CYS B:390
binding site for residue SF4 B 501
16
AD7
SOFTWARE
CYS B:339 , PRO B:340 , SER B:341 , CYS B:372 , CYS B:383 , GLY B:384 , CYS B:386 , BVQ B:503
binding site for residue SF4 B 502
17
AD8
SOFTWARE
TYR B:31 , THR B:36 , ALA B:37 , PHE B:38 , TYR B:170 , THR B:242 , TYR B:246 , MET B:249 , ASN B:272 , GLY B:275 , GLN B:276 , SER B:277 , VAL B:278 , ALA B:289 , MET B:292 , GLY B:293 , ALA B:294 , CYS B:295 , PRO B:302 , VAL B:304 , ARG B:305 , LEU B:306 , LYS B:308 , HIS B:357 , ASN B:358 , GLN B:359 , LYS B:362 , GLN B:364 , TYR B:369 , CYS B:372 , TYR B:382 , VAL B:387 , SF4 B:502 , Y8I B:506 , HOH B:604 , HOH B:605 , HOH B:650 , HOH B:660 , HOH B:671 , HOH B:689 , HOH B:744
binding site for residue BVQ B 503
18
AD9
SOFTWARE
PHE B:38 , ASN B:101 , LEU B:186 , GLU B:189 , HOH B:692
binding site for residue GOL B 504
19
AE1
SOFTWARE
GLU A:330 , GOL A:507 , VAL B:34 , THR B:39 , PRO B:41 , GLU B:189 , GLU B:191
binding site for residue BEN B 505
20
AE2
SOFTWARE
PHE B:38 , TRP B:56 , TYR B:102 , THR B:242 , TYR B:246 , ASN B:272 , TRP B:376 , TYR B:382 , BVQ B:503 , HOH B:604
binding site for residue Y8I B 506
21
AE3
SOFTWARE
LEU A:124 , LEU B:186 , HIS B:187 , HOH B:641
binding site for residue Y8I B 507
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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SCOP Domains
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CATH Domains
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Pfam Domains
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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Asym.Unit (313 KB)
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