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5M8T
Asym. Unit
Info
Asym.Unit (328 KB)
Biol.Unit 1 (83 KB)
Biol.Unit 2 (84 KB)
Biol.Unit 3 (84 KB)
Biol.Unit 4 (85 KB)
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Title
:
CRYSTAL STRUCTURE OF HUMAN TYROSINASE RELATED PROTEIN 1 (T391V-R374S-Y362F) IN COMPLEX WITH TROPOLONE
Authors
:
X. Lai, M. Soler-Lopez, H. J. Wichers, B. W. Dijkstra
Date
:
29 Oct 16 (Deposition) - 12 Jul 17 (Release) - 12 Jul 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.35
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Human Tyrosinase Related Protein 1, Melanin Biosynthesis, Tyrosinase, Oxidoreductase, Unknown Function
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
X. Lai, H. J. Wichers, M. Soler-Lopez, B. W. Dijkstra
Structure Of Human Tyrosinase Related Protein 1 Reveals A Binuclear Zinc Active Site Important For Melanogenesis.
Angew. Chem. Int. Ed. Engl. 2017
[
close entry info
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Hetero Components
(5, 64)
Info
All Hetero Components
1a: 2-HYDROXYCYCLOHEPTA-2,4,6-TRIEN-1-... (0TRa)
1b: 2-HYDROXYCYCLOHEPTA-2,4,6-TRIEN-1-... (0TRb)
1c: 2-HYDROXYCYCLOHEPTA-2,4,6-TRIEN-1-... (0TRc)
1d: 2-HYDROXYCYCLOHEPTA-2,4,6-TRIEN-1-... (0TRd)
2a: ALPHA-L-FUCOSE (FUCa)
2b: ALPHA-L-FUCOSE (FUCb)
2c: ALPHA-L-FUCOSE (FUCc)
2d: ALPHA-L-FUCOSE (FUCd)
2e: ALPHA-L-FUCOSE (FUCe)
2f: ALPHA-L-FUCOSE (FUCf)
2g: ALPHA-L-FUCOSE (FUCg)
2h: ALPHA-L-FUCOSE (FUCh)
3a: ALPHA-D-MANNOSE (MANa)
3b: ALPHA-D-MANNOSE (MANb)
3c: ALPHA-D-MANNOSE (MANc)
3d: ALPHA-D-MANNOSE (MANd)
3e: ALPHA-D-MANNOSE (MANe)
3f: ALPHA-D-MANNOSE (MANf)
4a: N-ACETYL-D-GLUCOSAMINE (NAGa)
4aa: N-ACETYL-D-GLUCOSAMINE (NAGaa)
4ab: N-ACETYL-D-GLUCOSAMINE (NAGab)
4ac: N-ACETYL-D-GLUCOSAMINE (NAGac)
4ad: N-ACETYL-D-GLUCOSAMINE (NAGad)
4ae: N-ACETYL-D-GLUCOSAMINE (NAGae)
4af: N-ACETYL-D-GLUCOSAMINE (NAGaf)
4ag: N-ACETYL-D-GLUCOSAMINE (NAGag)
4ah: N-ACETYL-D-GLUCOSAMINE (NAGah)
4ai: N-ACETYL-D-GLUCOSAMINE (NAGai)
4aj: N-ACETYL-D-GLUCOSAMINE (NAGaj)
4ak: N-ACETYL-D-GLUCOSAMINE (NAGak)
4al: N-ACETYL-D-GLUCOSAMINE (NAGal)
4b: N-ACETYL-D-GLUCOSAMINE (NAGb)
4c: N-ACETYL-D-GLUCOSAMINE (NAGc)
4d: N-ACETYL-D-GLUCOSAMINE (NAGd)
4e: N-ACETYL-D-GLUCOSAMINE (NAGe)
4f: N-ACETYL-D-GLUCOSAMINE (NAGf)
4g: N-ACETYL-D-GLUCOSAMINE (NAGg)
4h: N-ACETYL-D-GLUCOSAMINE (NAGh)
4i: N-ACETYL-D-GLUCOSAMINE (NAGi)
4j: N-ACETYL-D-GLUCOSAMINE (NAGj)
4k: N-ACETYL-D-GLUCOSAMINE (NAGk)
4l: N-ACETYL-D-GLUCOSAMINE (NAGl)
4m: N-ACETYL-D-GLUCOSAMINE (NAGm)
4n: N-ACETYL-D-GLUCOSAMINE (NAGn)
4o: N-ACETYL-D-GLUCOSAMINE (NAGo)
4p: N-ACETYL-D-GLUCOSAMINE (NAGp)
4q: N-ACETYL-D-GLUCOSAMINE (NAGq)
4r: N-ACETYL-D-GLUCOSAMINE (NAGr)
4s: N-ACETYL-D-GLUCOSAMINE (NAGs)
4t: N-ACETYL-D-GLUCOSAMINE (NAGt)
4u: N-ACETYL-D-GLUCOSAMINE (NAGu)
4v: N-ACETYL-D-GLUCOSAMINE (NAGv)
4w: N-ACETYL-D-GLUCOSAMINE (NAGw)
4x: N-ACETYL-D-GLUCOSAMINE (NAGx)
4y: N-ACETYL-D-GLUCOSAMINE (NAGy)
4z: N-ACETYL-D-GLUCOSAMINE (NAGz)
5a: ZINC ION (ZNa)
5b: ZINC ION (ZNb)
5c: ZINC ION (ZNc)
5d: ZINC ION (ZNd)
5e: ZINC ION (ZNe)
5f: ZINC ION (ZNf)
5g: ZINC ION (ZNg)
5h: ZINC ION (ZNh)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
0TR
4
Ligand/Ion
2-HYDROXYCYCLOHEPTA-2,4,6-TRIEN-1-ONE
2
FUC
8
Ligand/Ion
ALPHA-L-FUCOSE
3
MAN
6
Ligand/Ion
ALPHA-D-MANNOSE
4
NAG
38
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
5
ZN
8
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(33, 33)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
20: AE2 (SOFTWARE)
21: AE3 (SOFTWARE)
22: AE4 (SOFTWARE)
23: AE5 (SOFTWARE)
24: AE6 (SOFTWARE)
25: AE7 (SOFTWARE)
26: AE8 (SOFTWARE)
27: AE9 (SOFTWARE)
28: AF1 (SOFTWARE)
29: AF2 (SOFTWARE)
30: AF3 (SOFTWARE)
31: AF4 (SOFTWARE)
32: AF5 (SOFTWARE)
33: AF6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:377 , HIS A:381 , HIS A:404 , ZN A:512 , 0TR A:513 , HOH A:601
binding site for residue ZN A 511
02
AC2
SOFTWARE
HIS A:192 , HIS A:215 , HIS A:224 , ZN A:511 , 0TR A:513 , HOH A:601
binding site for residue ZN A 512
03
AC3
SOFTWARE
HIS A:192 , HIS A:215 , HIS A:377 , HIS A:381 , GLY A:389 , GLN A:390 , VAL A:391 , SER A:394 , ZN A:511 , ZN A:512 , HOH A:601
binding site for residue 0TR A 513
04
AC4
SOFTWARE
HIS B:192 , HIS B:215 , HIS B:224 , ZN B:516 , 0TR B:517 , HOH B:601
binding site for residue ZN B 515
05
AC5
SOFTWARE
HIS B:377 , HIS B:381 , HIS B:404 , ZN B:515 , 0TR B:517 , HOH B:601
binding site for residue ZN B 516
06
AC6
SOFTWARE
HIS B:192 , HIS B:215 , HIS B:377 , ASN B:378 , HIS B:381 , GLY B:389 , GLN B:390 , VAL B:391 , SER B:394 , ZN B:515 , ZN B:516 , HOH B:601 , HOH B:680
binding site for residue 0TR B 517
07
AC7
SOFTWARE
HIS C:192 , HIS C:215 , HIS C:224 , ZN C:515 , 0TR C:516 , HOH C:601
binding site for residue ZN C 514
08
AC8
SOFTWARE
HIS C:377 , HIS C:381 , HIS C:404 , ZN C:514 , 0TR C:516 , HOH C:601
binding site for residue ZN C 515
09
AC9
SOFTWARE
HIS C:192 , HIS C:215 , HIS C:377 , ASN C:378 , HIS C:381 , GLY C:389 , GLN C:390 , VAL C:391 , SER C:394 , ZN C:514 , ZN C:515 , HOH C:601
binding site for residue 0TR C 516
10
AD1
SOFTWARE
HIS D:192 , HIS D:215 , HIS D:224 , ZN D:517 , 0TR D:518 , HOH D:601
binding site for residue ZN D 516
11
AD2
SOFTWARE
HIS D:377 , HIS D:381 , HIS D:404 , ZN D:516 , 0TR D:518 , HOH D:601
binding site for residue ZN D 517
12
AD3
SOFTWARE
HIS D:192 , HIS D:215 , HIS D:377 , ASN D:378 , HIS D:381 , GLY D:389 , GLN D:390 , VAL D:391 , SER D:394 , ZN D:516 , ZN D:517 , HOH D:601
binding site for residue 0TR D 518
13
AD4
SOFTWARE
ARG A:37 , SER A:38 , ARG A:93 , PHE A:94 , ASN A:96 , HOH A:664
binding site for Poly-Saccharide residues NAG A 501 through FUC A 503 bound to ASN A 96
14
AD5
SOFTWARE
ASN A:181 , HOH A:699
binding site for Poly-Saccharide residues NAG A 504 through FUC A 505 bound to ASN A 181
15
AD6
SOFTWARE
ARG A:164 , GLU A:180 , SER A:292 , ASP A:295 , ASN A:304 , HOH A:701
binding site for Poly-Saccharide residues NAG A 506 through NAG A 507 bound to ASN A 304
16
AD7
SOFTWARE
ASN A:350 , HOH A:604 , HOH A:678
binding site for Mono-Saccharide NAG A 508 bound to ASN A 350
17
AD8
SOFTWARE
GLY A:317 , ASN A:318 , VAL A:319 , ALA A:320 , ASN A:385 , GLY A:386 , HOH A:610
binding site for Poly-Saccharide residues NAG A 509 through NAG A 510 bound to ASN A 385
18
AD9
SOFTWARE
LEU B:36 , ARG B:37 , SER B:38 , ARG B:93 , PHE B:94 , ASN B:96 , HOH B:624 , NAG D:504 , NAG D:505 , FUC D:507
binding site for Poly-Saccharide residues NAG B 501 through FUC B 505 bound to ASN B 96
19
AE1
SOFTWARE
ARG B:28 , ASN B:181 , HOH B:664
binding site for Poly-Saccharide residues NAG B 506 through FUC B 507 bound to ASN B 181
20
AE2
SOFTWARE
ARG B:164 , GLU B:180 , SER B:292 , ASP B:295 , ASN B:304 , HOH B:622 , HOH B:651
binding site for Poly-Saccharide residues NAG B 508 through NAG B 509 bound to ASN B 304
21
AE3
SOFTWARE
TYR B:348 , ASN B:350 , HOH B:602 , HOH B:613 , HOH B:630 , HOH B:634 , HOH B:662 , HOH B:695 , HOH B:733 , HOH B:735
binding site for Poly-Saccharide residues NAG B 510 through MAN B 512 bound to ASN B 350
22
AE4
SOFTWARE
ASN B:318 , VAL B:319 , ALA B:320 , ASN B:385 , GLY B:386 , HOH B:729
binding site for Poly-Saccharide residues NAG B 513 through NAG B 514 bound to ASN B 385
23
AE5
SOFTWARE
ARG C:37 , ARG C:93 , PHE C:94 , ASN C:96
binding site for Poly-Saccharide residues NAG C 501 through FUC C 503 bound to ASN C 96
24
AE6
SOFTWARE
ASP A:421 , GLY B:52 , ASN C:104 , TRP C:117 , ASN C:459 , HOH C:623 , HOH C:681
binding site for Poly-Saccharide residues NAG C 504 through MAN C 506 bound to ASN C 104
25
AE7
SOFTWARE
ASN C:181 , HOH C:685
binding site for Mono-Saccharide NAG C 507 bound to ASN C 181
26
AE8
SOFTWARE
ARG C:164 , GLU C:180 , SER C:292 , ASP C:295 , ASN C:304 , ASP C:308 , HOH C:639 , HOH C:668 , HOH C:676
binding site for Poly-Saccharide residues NAG C 508 through NAG C 509 bound to ASN C 304
27
AE9
SOFTWARE
ASN C:350 , HOH C:604
binding site for Poly-Saccharide residues NAG C 510 through NAG C 511 bound to ASN C 350
28
AF1
SOFTWARE
GLY C:317 , ASN C:318 , VAL C:319 , ALA C:320 , ASN C:385 , GLY C:386 , HOH C:606
binding site for Poly-Saccharide residues NAG C 512 through NAG C 513 bound to ASN C 385
29
AF2
SOFTWARE
ARG D:37 , ARG D:93 , PHE D:94 , ASN D:96 , HOH D:604 , HOH D:631
binding site for Poly-Saccharide residues NAG D 501 through FUC D 503 bound to ASN D 96
30
AF3
SOFTWARE
MAN B:504 , ASP C:421 , PHE D:179 , ASN D:181 , HOH D:658 , HOH D:667 , HOH D:688
binding site for Poly-Saccharide residues NAG D 504 through FUC D 507 bound to ASN D 181
31
AF4
SOFTWARE
ARG D:164 , SER D:292 , ASP D:295 , ASN D:304 , ASP D:308 , HOH D:608 , HOH D:642 , HOH D:679
binding site for Poly-Saccharide residues NAG D 508 through NAG D 509 bound to ASN D 304
32
AF5
SOFTWARE
GLY C:111 , ARG C:118 , GLY C:119 , ALA C:120 , GLN C:124 , VAL C:126 , HOH C:665 , TYR D:348 , ASN D:350 , HOH D:605 , HOH D:625 , HOH D:638
binding site for Poly-Saccharide residues NAG D 510 through FUC D 513 bound to ASN D 350
33
AF6
SOFTWARE
GLY D:317 , ASN D:318 , VAL D:319 , ALA D:320 , ASN D:385 , GLY D:386 , HOH D:633 , HOH D:640 , HOH D:685
binding site for Poly-Saccharide residues NAG D 514 through NAG D 515 bound to ASN D 385
[
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SAPs(SNPs)/Variants
(0, 0)
Info
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PROSITE Patterns/Profiles
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Exons
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SCOP Domains
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CATH Domains
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Pfam Domains
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Asym.Unit (328 KB)
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Biol.Unit 1 (83 KB)
Header - Biol.Unit 1
Biol.Unit 2 (84 KB)
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Biol.Unit 3 (84 KB)
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