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5M8Q
Asym. Unit
Info
Asym.Unit (308 KB)
Biol.Unit 1 (80 KB)
Biol.Unit 2 (78 KB)
Biol.Unit 3 (80 KB)
Biol.Unit 4 (79 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN TYROSINASE RELATED PROTEIN 1 MUTANT (T391V-R374S-Y362F) IN COMPLEX WITH KOJIC ACID
Authors
:
X. Lai, M. Soler-Lopez, H. J. Wichers, B. W. Dijkstra
Date
:
29 Oct 16 (Deposition) - 12 Jul 17 (Release) - 12 Jul 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.85
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Human Tyrosinase Related Protein 1, Melanin Biosynthesis, Tyrosinase, Oxidoreductase, Unknown Function
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
X. Lai, H. J. Wichers, M. Soler-Lopez, B. W. Dijkstra
Structure Of Human Tyrosinase Related Protein 1 Reveals A Binuclear Zinc Active Site Important For Melanogenesis.
Angew. Chem. Int. Ed. Engl. 2017
[
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Hetero Components
(5, 49)
Info
All Hetero Components
1a: ALPHA-L-FUCOSE (FUCa)
1b: ALPHA-L-FUCOSE (FUCb)
1c: ALPHA-L-FUCOSE (FUCc)
1d: ALPHA-L-FUCOSE (FUCd)
1e: ALPHA-L-FUCOSE (FUCe)
2a: 5-HYDROXY-2-(HYDROXYMETHYL)-4H-PYR... (KOJa)
2b: 5-HYDROXY-2-(HYDROXYMETHYL)-4H-PYR... (KOJb)
2c: 5-HYDROXY-2-(HYDROXYMETHYL)-4H-PYR... (KOJc)
2d: 5-HYDROXY-2-(HYDROXYMETHYL)-4H-PYR... (KOJd)
3a: ALPHA-D-MANNOSE (MANa)
3b: ALPHA-D-MANNOSE (MANb)
3c: ALPHA-D-MANNOSE (MANc)
3d: ALPHA-D-MANNOSE (MANd)
3e: ALPHA-D-MANNOSE (MANe)
3f: ALPHA-D-MANNOSE (MANf)
4a: N-ACETYL-D-GLUCOSAMINE (NAGa)
4b: N-ACETYL-D-GLUCOSAMINE (NAGb)
4c: N-ACETYL-D-GLUCOSAMINE (NAGc)
4d: N-ACETYL-D-GLUCOSAMINE (NAGd)
4e: N-ACETYL-D-GLUCOSAMINE (NAGe)
4f: N-ACETYL-D-GLUCOSAMINE (NAGf)
4g: N-ACETYL-D-GLUCOSAMINE (NAGg)
4h: N-ACETYL-D-GLUCOSAMINE (NAGh)
4i: N-ACETYL-D-GLUCOSAMINE (NAGi)
4j: N-ACETYL-D-GLUCOSAMINE (NAGj)
4k: N-ACETYL-D-GLUCOSAMINE (NAGk)
4l: N-ACETYL-D-GLUCOSAMINE (NAGl)
4m: N-ACETYL-D-GLUCOSAMINE (NAGm)
4n: N-ACETYL-D-GLUCOSAMINE (NAGn)
4o: N-ACETYL-D-GLUCOSAMINE (NAGo)
4p: N-ACETYL-D-GLUCOSAMINE (NAGp)
4q: N-ACETYL-D-GLUCOSAMINE (NAGq)
4r: N-ACETYL-D-GLUCOSAMINE (NAGr)
4s: N-ACETYL-D-GLUCOSAMINE (NAGs)
4t: N-ACETYL-D-GLUCOSAMINE (NAGt)
4u: N-ACETYL-D-GLUCOSAMINE (NAGu)
4v: N-ACETYL-D-GLUCOSAMINE (NAGv)
4w: N-ACETYL-D-GLUCOSAMINE (NAGw)
4x: N-ACETYL-D-GLUCOSAMINE (NAGx)
4y: N-ACETYL-D-GLUCOSAMINE (NAGy)
5a: ZINC ION (ZNa)
5b: ZINC ION (ZNb)
5c: ZINC ION (ZNc)
5d: ZINC ION (ZNd)
5e: ZINC ION (ZNe)
5f: ZINC ION (ZNf)
5g: ZINC ION (ZNg)
5h: ZINC ION (ZNh)
5i: ZINC ION (ZNi)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
FUC
5
Ligand/Ion
ALPHA-L-FUCOSE
2
KOJ
4
Ligand/Ion
5-HYDROXY-2-(HYDROXYMETHYL)-4H-PYRAN-4-ONE
3
MAN
6
Ligand/Ion
ALPHA-D-MANNOSE
4
NAG
25
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
5
ZN
9
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(31, 31)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
20: AE2 (SOFTWARE)
21: AE3 (SOFTWARE)
22: AE4 (SOFTWARE)
23: AE5 (SOFTWARE)
24: AE6 (SOFTWARE)
25: AE7 (SOFTWARE)
26: AE8 (SOFTWARE)
27: AE9 (SOFTWARE)
28: AF1 (SOFTWARE)
29: AF2 (SOFTWARE)
30: AF3 (SOFTWARE)
31: AF4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:377 , HIS A:381 , HIS A:404 , ZN A:515 , KOJ A:516 , HOH A:601
binding site for residue ZN A 514
02
AC2
SOFTWARE
HIS A:192 , HIS A:215 , HIS A:224 , ZN A:514 , KOJ A:516 , HOH A:601
binding site for residue ZN A 515
03
AC3
SOFTWARE
HIS A:192 , HIS A:215 , HIS A:377 , ASN A:378 , HIS A:381 , LEU A:382 , GLY A:389 , VAL A:391 , SER A:394 , ZN A:514 , ZN A:515 , HOH A:601
binding site for residue KOJ A 516
04
AC4
SOFTWARE
ARG B:164 , GLU B:180 , SER B:292 , ASP B:295 , TYR B:296 , ASN B:304
binding site for residue NAG B 504
05
AC5
SOFTWARE
HIS B:192 , HIS B:215 , HIS B:224 , ZN B:507 , KOJ B:508 , HOH B:601
binding site for residue ZN B 506
06
AC6
SOFTWARE
HIS B:377 , HIS B:381 , PHE B:400 , HIS B:404 , ZN B:506 , KOJ B:508 , HOH B:601
binding site for residue ZN B 507
07
AC7
SOFTWARE
HIS B:215 , HIS B:377 , ASN B:378 , HIS B:381 , LEU B:382 , GLY B:389 , GLN B:390 , VAL B:391 , SER B:394 , ZN B:506 , ZN B:507 , HOH B:601
binding site for residue KOJ B 508
08
AC8
SOFTWARE
ARG C:28 , ASN C:181
binding site for residue NAG C 503
09
AC9
SOFTWARE
HIS C:377 , HIS C:381 , HIS C:404 , ZN C:513 , KOJ C:514 , HOH C:601
binding site for residue ZN C 512
10
AD1
SOFTWARE
HIS C:192 , HIS C:215 , HIS C:224 , ZN C:512 , KOJ C:514 , HOH C:601
binding site for residue ZN C 513
11
AD2
SOFTWARE
HIS C:192 , HIS C:215 , HIS C:377 , ASN C:378 , HIS C:381 , GLY C:389 , VAL C:391 , SER C:394 , ZN C:512 , ZN C:513 , HOH C:601
binding site for residue KOJ C 514
12
AD3
SOFTWARE
GLU C:66 , HIS C:100 , ARG D:64 , GLU D:66 , HIS D:100
binding site for residue ZN C 515
13
AD4
SOFTWARE
HIS D:377 , HIS D:381 , HIS D:404 , ZN D:509 , KOJ D:510 , HOH D:601
binding site for residue ZN D 508
14
AD5
SOFTWARE
HIS D:192 , HIS D:215 , HIS D:224 , ZN D:508 , KOJ D:510 , HOH D:601
binding site for residue ZN D 509
15
AD6
SOFTWARE
HIS D:192 , HIS D:215 , HIS D:377 , HIS D:381 , LEU D:382 , GLY D:389 , VAL D:391 , SER D:394 , ZN D:508 , ZN D:509 , HOH D:601
binding site for residue KOJ D 510
16
AD7
SOFTWARE
LEU A:36 , ARG A:37 , SER A:38 , GLY A:39 , ARG A:93 , PHE A:94 , ASN A:96
binding site for Poly-Saccharide residues NAG A 501 through FUC A 503 bound to ASN A 96
17
AD8
SOFTWARE
ARG A:28 , ASN A:181
binding site for Mono-Saccharide NAG A 504 bound to ASN A 181
18
AD9
SOFTWARE
ARG A:164 , SER A:292 , ASP A:295 , ASN A:304
binding site for Poly-Saccharide residues NAG A 505 through NAG A 506 bound to ASN A 304
19
AE1
SOFTWARE
ASN A:350 , ARG B:62 , GLY B:111 , ARG B:118 , GLY B:119 , ALA B:120 , GLN B:124
binding site for Poly-Saccharide residues NAG A 507 through MAN A 511 bound to ASN A 350
20
AE2
SOFTWARE
GLY A:317 , ASN A:318 , VAL A:319 , ALA A:320 , ASN A:385 , GLY A:386
binding site for Poly-Saccharide residues NAG A 512 through NAG A 513 bound to ASN A 385
21
AE3
SOFTWARE
ARG B:37 , ASN B:96
binding site for Mono-Saccharide NAG B 501 bound to ASN B 96
22
AE4
SOFTWARE
ARG B:28 , PHE B:179 , ASN B:181
binding site for Poly-Saccharide residues NAG B 502 through FUC B 503 bound to ASN B 181
23
AE5
SOFTWARE
GLY B:317 , ASN B:318 , VAL B:319 , ALA B:320 , ASN B:385 , GLY B:386
binding site for Mono-Saccharide NAG B 505 bound to ASN B 385
24
AE6
SOFTWARE
ARG C:37 , SER C:38 , GLY C:39 , ARG C:93 , PHE C:94 , ASN C:96
binding site for Poly-Saccharide residues NAG C 501 through FUC C 502 bound to ASN C 96
25
AE7
SOFTWARE
ARG C:164 , GLU C:180 , SER C:292 , ASP C:295 , TYR C:296 , ASN C:304
binding site for Poly-Saccharide residues NAG C 504 through NAG C 505 bound to ASN C 304
26
AE8
SOFTWARE
ASN C:350 , SER D:46 , SER D:60 , GLY D:111 , ARG D:118 , GLY D:119 , ALA D:120 , GLN D:124
binding site for Poly-Saccharide residues NAG C 506 through MAN C 510 bound to ASN C 350
27
AE9
SOFTWARE
ASN C:318 , VAL C:319 , ALA C:320 , ASN C:385 , GLY C:386
binding site for Mono-Saccharide NAG C 511 bound to ASN C 385
28
AF1
SOFTWARE
VAL A:48 , ARG D:37 , SER D:38 , ARG D:93 , PHE D:94 , ASN D:96
binding site for Poly-Saccharide residues NAG D 501 through FUC D 502 bound to ASN D 96
29
AF2
SOFTWARE
ASN D:181
binding site for Poly-Saccharide residues NAG D 503 through FUC D 504 bound to ASN D 181
30
AF3
SOFTWARE
ARG D:164 , SER D:292 , ASP D:295 , ASN D:304 , ASP D:308
binding site for Poly-Saccharide residues NAG D 505 through NAG D 506 bound to ASN D 304
31
AF4
SOFTWARE
ASN D:318 , VAL D:319 , ALA D:320 , ASN D:385 , GLY D:386
binding site for Mono-Saccharide NAG D 507 bound to ASN D 385
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
Info
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Exons
(0, 0)
Info
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SCOP Domains
(0, 0)
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CATH Domains
(0, 0)
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Pfam Domains
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