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5M8P
Biol. Unit 1
Info
Asym.Unit (320 KB)
Biol.Unit 1 (81 KB)
Biol.Unit 2 (81 KB)
Biol.Unit 3 (82 KB)
Biol.Unit 4 (82 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN TYROSINASE RELATED PROTEIN 1 IN COMPLEX WITH TYROSINE
Authors
:
X. Lai, M. Soler-Lopez, H. J. Wichers, B. W. Dijkstra
Date
:
29 Oct 16 (Deposition) - 12 Jul 17 (Release) - 12 Jul 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Human Tyrosinase Related Protein 1, Melanin Biosynthesis, Tyrosinase, Oxidoreductase, Unknown Function
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
X. Lai, H. J. Wichers, M. Soler-Lopez, B. W. Dijkstra
Structure Of Human Tyrosinase Related Protein 1 Reveals A Binuclear Zinc Active Site Important For Melanogenesis.
Angew. Chem. Int. Ed. Engl. 2017
[
close entry info
]
Hetero Components
(3, 13)
Info
All Hetero Components
1a: 2,6-ANHYDRO-1-DEOXY-D-GALACTITOL (FU4a)
2a: ALPHA-L-FUCOSE (FUCa)
2b: ALPHA-L-FUCOSE (FUCb)
2c: ALPHA-L-FUCOSE (FUCc)
2d: ALPHA-L-FUCOSE (FUCd)
2e: ALPHA-L-FUCOSE (FUCe)
2f: ALPHA-L-FUCOSE (FUCf)
2g: ALPHA-L-FUCOSE (FUCg)
3a: ALPHA-D-MANNOSE (MANa)
3b: ALPHA-D-MANNOSE (MANb)
3c: ALPHA-D-MANNOSE (MANc)
3d: ALPHA-D-MANNOSE (MANd)
3e: ALPHA-D-MANNOSE (MANe)
3f: ALPHA-D-MANNOSE (MANf)
3g: ALPHA-D-MANNOSE (MANg)
3h: ALPHA-D-MANNOSE (MANh)
3i: ALPHA-D-MANNOSE (MANi)
3j: ALPHA-D-MANNOSE (MANj)
4a: N-ACETYL-D-GLUCOSAMINE (NAGa)
4aa: N-ACETYL-D-GLUCOSAMINE (NAGaa)
4ab: N-ACETYL-D-GLUCOSAMINE (NAGab)
4ac: N-ACETYL-D-GLUCOSAMINE (NAGac)
4ad: N-ACETYL-D-GLUCOSAMINE (NAGad)
4ae: N-ACETYL-D-GLUCOSAMINE (NAGae)
4af: N-ACETYL-D-GLUCOSAMINE (NAGaf)
4ag: N-ACETYL-D-GLUCOSAMINE (NAGag)
4ah: N-ACETYL-D-GLUCOSAMINE (NAGah)
4ai: N-ACETYL-D-GLUCOSAMINE (NAGai)
4aj: N-ACETYL-D-GLUCOSAMINE (NAGaj)
4ak: N-ACETYL-D-GLUCOSAMINE (NAGak)
4al: N-ACETYL-D-GLUCOSAMINE (NAGal)
4am: N-ACETYL-D-GLUCOSAMINE (NAGam)
4an: N-ACETYL-D-GLUCOSAMINE (NAGan)
4b: N-ACETYL-D-GLUCOSAMINE (NAGb)
4c: N-ACETYL-D-GLUCOSAMINE (NAGc)
4d: N-ACETYL-D-GLUCOSAMINE (NAGd)
4e: N-ACETYL-D-GLUCOSAMINE (NAGe)
4f: N-ACETYL-D-GLUCOSAMINE (NAGf)
4g: N-ACETYL-D-GLUCOSAMINE (NAGg)
4h: N-ACETYL-D-GLUCOSAMINE (NAGh)
4i: N-ACETYL-D-GLUCOSAMINE (NAGi)
4j: N-ACETYL-D-GLUCOSAMINE (NAGj)
4k: N-ACETYL-D-GLUCOSAMINE (NAGk)
4l: N-ACETYL-D-GLUCOSAMINE (NAGl)
4m: N-ACETYL-D-GLUCOSAMINE (NAGm)
4n: N-ACETYL-D-GLUCOSAMINE (NAGn)
4o: N-ACETYL-D-GLUCOSAMINE (NAGo)
4p: N-ACETYL-D-GLUCOSAMINE (NAGp)
4q: N-ACETYL-D-GLUCOSAMINE (NAGq)
4r: N-ACETYL-D-GLUCOSAMINE (NAGr)
4s: N-ACETYL-D-GLUCOSAMINE (NAGs)
4t: N-ACETYL-D-GLUCOSAMINE (NAGt)
4u: N-ACETYL-D-GLUCOSAMINE (NAGu)
4v: N-ACETYL-D-GLUCOSAMINE (NAGv)
4w: N-ACETYL-D-GLUCOSAMINE (NAGw)
4x: N-ACETYL-D-GLUCOSAMINE (NAGx)
4y: N-ACETYL-D-GLUCOSAMINE (NAGy)
4z: N-ACETYL-D-GLUCOSAMINE (NAGz)
5a: TYROSINE (TYRa)
5b: TYROSINE (TYRb)
5c: TYROSINE (TYRc)
5d: TYROSINE (TYRd)
6a: ZINC ION (ZNa)
6b: ZINC ION (ZNb)
6c: ZINC ION (ZNc)
6d: ZINC ION (ZNd)
6e: ZINC ION (ZNe)
6f: ZINC ION (ZNf)
6g: ZINC ION (ZNg)
6h: ZINC ION (ZNh)
6i: ZINC ION (ZNi)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
FU4
-1
Ligand/Ion
2,6-ANHYDRO-1-DEOXY-D-GALACTITOL
2
FUC
2
Ligand/Ion
ALPHA-L-FUCOSE
3
MAN
-1
Ligand/Ion
ALPHA-D-MANNOSE
4
NAG
10
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
5
TYR
1
Mod. Amino Acid
TYROSINE
6
ZN
-1
Ligand/Ion
ZINC ION
[
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AD6 (SOFTWARE)
06: AD7 (SOFTWARE)
07: AD8 (SOFTWARE)
08: AD9 (SOFTWARE)
09: AE1 (SOFTWARE)
10: AE2 (SOFTWARE)
11: AE6 (SOFTWARE)
12: AF4 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:192 , ARG A:374 , ASN A:378 , GLY A:389 , GLN A:390 , THR A:391 , SER A:394 , ZN A:514 , HOH A:605 , HOH A:608
binding site for residue TYR A 513
02
AC2
SOFTWARE
HIS A:192 , HIS A:215 , HIS A:224 , TYR A:513 , ZN A:515 , HOH A:605
binding site for residue ZN A 514
03
AC3
SOFTWARE
HIS A:377 , HIS A:381 , HIS A:404 , ZN A:514 , HOH A:605
binding site for residue ZN A 515
04
AC4
SOFTWARE
GLU A:66 , HIS A:100 , GLU B:66 , HIS B:100
binding site for residue ZN A 516
05
AD6
SOFTWARE
ARG A:37 , SER A:38 , ARG A:93 , PHE A:94 , ASN A:96
binding site for Poly-Saccharide residues NAG A 501 through FUC A 503 bound to ASN A 96
06
AD7
SOFTWARE
GLY A:103 , ASN A:104 , CYS A:113 , ARG A:114 , PRO A:115 , GLY A:116 , ARG A:118 , CYS A:122 , ASP A:123 , ARG A:125
binding site for Poly-Saccharide residues TRP A 117 through NAG A 504 bound to ASN A 104
07
AD8
SOFTWARE
ARG A:28 , PHE A:179 , ASN A:181 , HOH A:606
binding site for Poly-Saccharide residues NAG A 505 through FUC A 506 bound to ASN A 181
08
AD9
SOFTWARE
ARG A:164 , SER A:292 , ASP A:295 , ASN A:304
binding site for Poly-Saccharide residues NAG A 507 through NAG A 508 bound to ASN A 304
09
AE1
SOFTWARE
ASN A:350
binding site for Poly-Saccharide residues NAG A 509 through NAG A 510 bound to ASN A 350
10
AE2
SOFTWARE
ASN A:318 , VAL A:319 , ALA A:320 , ASN A:385 , GLY A:386
binding site for Poly-Saccharide residues NAG A 511 through NAG A 512 bound to ASN A 385
11
AE6
SOFTWARE
SER A:46 , ARG A:62 , GLY A:111 , ARG A:118 , GLY A:119 , ALA A:120 , GLN A:124 , GLU A:237 , GLN B:78 , TYR B:348 , ASN B:350
binding site for Poly-Saccharide residues NAG B 509 through MAN B 513 bound to ASN B 350
12
AF4
SOFTWARE
GLU A:428 , ASN C:419 , SER C:423 , MAN C:515 , ASN D:181
binding site for Poly-Saccharide residues NAG D 504 through FU4 D 507 bound to ASN D 181
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(, 0)
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(0, 0)
Info
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CATH Domains
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Pfam Domains
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Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
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Asym.Unit (320 KB)
Header - Asym.Unit
Biol.Unit 1 (81 KB)
Header - Biol.Unit 1
Biol.Unit 2 (81 KB)
Header - Biol.Unit 2
Biol.Unit 3 (82 KB)
Header - Biol.Unit 3
Biol.Unit 4 (82 KB)
Header - Biol.Unit 4
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