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5M8N
Biol. Unit 1
Info
Asym.Unit (319 KB)
Biol.Unit 1 (82 KB)
Biol.Unit 2 (83 KB)
Biol.Unit 3 (82 KB)
Biol.Unit 4 (82 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN TYROSINASE RELATED PROTEIN 1 IN COMPLEX WITH MIMOSINE
Authors
:
X. Lai, M. Soler-Lopez, H. J. Wichers, B. W. Dijkstra
Date
:
29 Oct 16 (Deposition) - 12 Jul 17 (Release) - 12 Jul 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Human Tyrosinase Related Protein 1, Melanin Biosynthesis, Tyrosinase, Oxidoreductase, Unknown Function
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
X. Lai, H. J. Wichers, M. Soler-Lopez, B. W. Dijkstra
Structure Of Human Tyrosinase Related Protein 1 Reveals A Binuclear Zinc Active Site Important For Melanogenesis.
Angew. Chem. Int. Ed. Engl. 2017
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Hetero Components
(4, 11)
Info
All Hetero Components
1a: ALPHA-L-FUCOSE (FUCa)
1b: ALPHA-L-FUCOSE (FUCb)
1c: ALPHA-L-FUCOSE (FUCc)
1d: ALPHA-L-FUCOSE (FUCd)
1e: ALPHA-L-FUCOSE (FUCe)
2a: ALPHA-D-MANNOSE (MANa)
2b: ALPHA-D-MANNOSE (MANb)
2c: ALPHA-D-MANNOSE (MANc)
2d: ALPHA-D-MANNOSE (MANd)
2e: ALPHA-D-MANNOSE (MANe)
2f: ALPHA-D-MANNOSE (MANf)
2g: ALPHA-D-MANNOSE (MANg)
3a: MIMOSINE (MMSa)
3b: MIMOSINE (MMSb)
3c: MIMOSINE (MMSc)
3d: MIMOSINE (MMSd)
4a: N-ACETYL-D-GLUCOSAMINE (NAGa)
4aa: N-ACETYL-D-GLUCOSAMINE (NAGaa)
4ab: N-ACETYL-D-GLUCOSAMINE (NAGab)
4ac: N-ACETYL-D-GLUCOSAMINE (NAGac)
4ad: N-ACETYL-D-GLUCOSAMINE (NAGad)
4ae: N-ACETYL-D-GLUCOSAMINE (NAGae)
4af: N-ACETYL-D-GLUCOSAMINE (NAGaf)
4ag: N-ACETYL-D-GLUCOSAMINE (NAGag)
4ah: N-ACETYL-D-GLUCOSAMINE (NAGah)
4ai: N-ACETYL-D-GLUCOSAMINE (NAGai)
4b: N-ACETYL-D-GLUCOSAMINE (NAGb)
4c: N-ACETYL-D-GLUCOSAMINE (NAGc)
4d: N-ACETYL-D-GLUCOSAMINE (NAGd)
4e: N-ACETYL-D-GLUCOSAMINE (NAGe)
4f: N-ACETYL-D-GLUCOSAMINE (NAGf)
4g: N-ACETYL-D-GLUCOSAMINE (NAGg)
4h: N-ACETYL-D-GLUCOSAMINE (NAGh)
4i: N-ACETYL-D-GLUCOSAMINE (NAGi)
4j: N-ACETYL-D-GLUCOSAMINE (NAGj)
4k: N-ACETYL-D-GLUCOSAMINE (NAGk)
4l: N-ACETYL-D-GLUCOSAMINE (NAGl)
4m: N-ACETYL-D-GLUCOSAMINE (NAGm)
4n: N-ACETYL-D-GLUCOSAMINE (NAGn)
4o: N-ACETYL-D-GLUCOSAMINE (NAGo)
4p: N-ACETYL-D-GLUCOSAMINE (NAGp)
4q: N-ACETYL-D-GLUCOSAMINE (NAGq)
4r: N-ACETYL-D-GLUCOSAMINE (NAGr)
4s: N-ACETYL-D-GLUCOSAMINE (NAGs)
4t: N-ACETYL-D-GLUCOSAMINE (NAGt)
4u: N-ACETYL-D-GLUCOSAMINE (NAGu)
4v: N-ACETYL-D-GLUCOSAMINE (NAGv)
4w: N-ACETYL-D-GLUCOSAMINE (NAGw)
4x: N-ACETYL-D-GLUCOSAMINE (NAGx)
4y: N-ACETYL-D-GLUCOSAMINE (NAGy)
4z: N-ACETYL-D-GLUCOSAMINE (NAGz)
5a: ZINC ION (ZNa)
5b: ZINC ION (ZNb)
5c: ZINC ION (ZNc)
5d: ZINC ION (ZNd)
5e: ZINC ION (ZNe)
5f: ZINC ION (ZNf)
5g: ZINC ION (ZNg)
5h: ZINC ION (ZNh)
5i: ZINC ION (ZNi)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
FUC
1
Ligand/Ion
ALPHA-L-FUCOSE
2
MAN
1
Ligand/Ion
ALPHA-D-MANNOSE
3
MMS
1
Ligand/Ion
MIMOSINE
4
NAG
8
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
5
ZN
-1
Ligand/Ion
ZINC ION
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AD5 (SOFTWARE)
06: AD6 (SOFTWARE)
07: AD7 (SOFTWARE)
08: AD8 (SOFTWARE)
09: AD9 (SOFTWARE)
10: AE6 (SOFTWARE)
11: AE9 (SOFTWARE)
12: AF3 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:377 , HIS A:381 , HIS A:404 , ZN A:512 , MMS A:514 , HOH A:616
binding site for residue ZN A 511
02
AC2
SOFTWARE
HIS A:192 , HIS A:215 , HIS A:224 , ZN A:511 , HOH A:616
binding site for residue ZN A 512
03
AC3
SOFTWARE
ARG A:64 , GLU A:66 , HIS A:100 , GLU C:66 , HIS C:100
binding site for residue ZN A 513
04
AC4
SOFTWARE
HIS A:215 , ARG A:374 , HIS A:377 , ASN A:378 , HIS A:381 , LEU A:382 , GLY A:389 , GLN A:390 , THR A:391 , SER A:394 , ZN A:511 , HOH A:602 , HOH A:616
binding site for residue MMS A 514
05
AD5
SOFTWARE
ARG A:37 , SER A:38 , GLY A:39 , LEU A:92 , ARG A:93 , ASN A:96 , HOH A:610 , HOH A:611 , HOH A:613 , HOH A:633 , VAL B:48 , SER C:72
binding site for Poly-Saccharide residues NAG A 501 through FUC A 504 bound to ASN A 96
06
AD6
SOFTWARE
PHE A:179 , ASN A:181
binding site for Mono-Saccharide NAG A 505 bound to ASN A 181
07
AD7
SOFTWARE
ARG A:164 , GLU A:180 , SER A:292 , ASP A:295 , TYR A:296 , ASN A:304 , HOH A:627
binding site for Poly-Saccharide residues NAG A 506 through NAG A 507 bound to ASN A 304
08
AD8
SOFTWARE
ASN A:350 , HOH A:635
binding site for Mono-Saccharide NAG A 508 bound to ASN A 350
09
AD9
SOFTWARE
GLY A:317 , ASN A:318 , VAL A:319 , ALA A:320 , ASN A:385 , GLY A:386
binding site for Poly-Saccharide residues NAG A 509 through NAG A 510 bound to ASN A 385
10
AE6
SOFTWARE
SER A:72 , HOH B:614 , LEU C:36 , ARG C:37 , SER C:38 , GLY C:39 , ARG C:93 , PHE C:94 , ASN C:96
binding site for Poly-Saccharide residues NAG C 501 through FUC C 503 bound to ASN C 96
11
AE9
SOFTWARE
SER A:46 , ARG A:62 , GLY A:111 , ARG A:118 , GLY A:119 , ALA A:120 , GLN A:124 , VAL A:126 , GLN C:78 , ASN C:350 , HOH C:603
binding site for Poly-Saccharide residues NAG C 508 through MAN C 512 bound to ASN C 350
12
AF3
SOFTWARE
TYR A:418 , ASN A:419 , ALA A:420 , ASP A:421 , ILE A:422 , SER A:423 , ASN D:104 , TRP D:117 , ARG D:125
binding site for Poly-Saccharide residues NAG D 504 through MAN D 506 bound to ASN D 104
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(, 0)
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(0, 0)
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CATH Domains
(0, 0)
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Pfam Domains
(0, 0)
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Protein & NOT Site
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Chain A
Asymmetric Unit 1
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select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
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show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
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Show PDB file:
Asym.Unit (319 KB)
Header - Asym.Unit
Biol.Unit 1 (82 KB)
Header - Biol.Unit 1
Biol.Unit 2 (83 KB)
Header - Biol.Unit 2
Biol.Unit 3 (82 KB)
Header - Biol.Unit 3
Biol.Unit 4 (82 KB)
Header - Biol.Unit 4
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