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5M8L
Biol. Unit 3
Info
Asym.Unit (318 KB)
Biol.Unit 1 (81 KB)
Biol.Unit 2 (81 KB)
Biol.Unit 3 (81 KB)
Biol.Unit 4 (82 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN TYROSINASE RELATED PROTEIN 1
Authors
:
X. Lai, M. Soler-Lopez, H. J. Wichers, B. W. Dijkstra
Date
:
29 Oct 16 (Deposition) - 12 Jul 17 (Release) - 12 Jul 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.35
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Human Tyrosinase Related Protein 1, Melanin Biosynthesis, Tyrosinase, Oxidoreductase, Unknown Function
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
X. Lai, H. J. Wichers, M. Soler-Lopez, B. W. Dijkstra
Structure Of Human Tyrosinase Related Protein 1 Reveals A Binuclear Zinc Active Site Important For Melanogenesis.
Angew. Chem. Int. Ed. Engl. 2017
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Hetero Components
(2, 11)
Info
All Hetero Components
1a: ALPHA-L-FUCOSE (FUCa)
1b: ALPHA-L-FUCOSE (FUCb)
1c: ALPHA-L-FUCOSE (FUCc)
1d: ALPHA-L-FUCOSE (FUCd)
1e: ALPHA-L-FUCOSE (FUCe)
1f: ALPHA-L-FUCOSE (FUCf)
1g: ALPHA-L-FUCOSE (FUCg)
1h: ALPHA-L-FUCOSE (FUCh)
1i: ALPHA-L-FUCOSE (FUCi)
2a: ALPHA-D-MANNOSE (MANa)
2b: ALPHA-D-MANNOSE (MANb)
2c: ALPHA-D-MANNOSE (MANc)
2d: ALPHA-D-MANNOSE (MANd)
2e: ALPHA-D-MANNOSE (MANe)
2f: ALPHA-D-MANNOSE (MANf)
2g: ALPHA-D-MANNOSE (MANg)
2h: ALPHA-D-MANNOSE (MANh)
3a: N-ACETYL-D-GLUCOSAMINE (NAGa)
3aa: N-ACETYL-D-GLUCOSAMINE (NAGaa)
3ab: N-ACETYL-D-GLUCOSAMINE (NAGab)
3ac: N-ACETYL-D-GLUCOSAMINE (NAGac)
3ad: N-ACETYL-D-GLUCOSAMINE (NAGad)
3ae: N-ACETYL-D-GLUCOSAMINE (NAGae)
3af: N-ACETYL-D-GLUCOSAMINE (NAGaf)
3ag: N-ACETYL-D-GLUCOSAMINE (NAGag)
3ah: N-ACETYL-D-GLUCOSAMINE (NAGah)
3ai: N-ACETYL-D-GLUCOSAMINE (NAGai)
3aj: N-ACETYL-D-GLUCOSAMINE (NAGaj)
3ak: N-ACETYL-D-GLUCOSAMINE (NAGak)
3b: N-ACETYL-D-GLUCOSAMINE (NAGb)
3c: N-ACETYL-D-GLUCOSAMINE (NAGc)
3d: N-ACETYL-D-GLUCOSAMINE (NAGd)
3e: N-ACETYL-D-GLUCOSAMINE (NAGe)
3f: N-ACETYL-D-GLUCOSAMINE (NAGf)
3g: N-ACETYL-D-GLUCOSAMINE (NAGg)
3h: N-ACETYL-D-GLUCOSAMINE (NAGh)
3i: N-ACETYL-D-GLUCOSAMINE (NAGi)
3j: N-ACETYL-D-GLUCOSAMINE (NAGj)
3k: N-ACETYL-D-GLUCOSAMINE (NAGk)
3l: N-ACETYL-D-GLUCOSAMINE (NAGl)
3m: N-ACETYL-D-GLUCOSAMINE (NAGm)
3n: N-ACETYL-D-GLUCOSAMINE (NAGn)
3o: N-ACETYL-D-GLUCOSAMINE (NAGo)
3p: N-ACETYL-D-GLUCOSAMINE (NAGp)
3q: N-ACETYL-D-GLUCOSAMINE (NAGq)
3r: N-ACETYL-D-GLUCOSAMINE (NAGr)
3s: N-ACETYL-D-GLUCOSAMINE (NAGs)
3t: N-ACETYL-D-GLUCOSAMINE (NAGt)
3u: N-ACETYL-D-GLUCOSAMINE (NAGu)
3v: N-ACETYL-D-GLUCOSAMINE (NAGv)
3w: N-ACETYL-D-GLUCOSAMINE (NAGw)
3x: N-ACETYL-D-GLUCOSAMINE (NAGx)
3y: N-ACETYL-D-GLUCOSAMINE (NAGy)
3z: N-ACETYL-D-GLUCOSAMINE (NAGz)
4a: ZINC ION (ZNa)
4b: ZINC ION (ZNb)
4c: ZINC ION (ZNc)
4d: ZINC ION (ZNd)
4e: ZINC ION (ZNe)
4f: ZINC ION (ZNf)
4g: ZINC ION (ZNg)
4h: ZINC ION (ZNh)
4i: ZINC ION (ZNi)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
FUC
2
Ligand/Ion
ALPHA-L-FUCOSE
2
MAN
-1
Ligand/Ion
ALPHA-D-MANNOSE
3
NAG
9
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
4
ZN
-1
Ligand/Ion
ZINC ION
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Sites
(10, 10)
Info
All Sites
01: AC6 (SOFTWARE)
02: AC7 (SOFTWARE)
03: AE2 (SOFTWARE)
04: AE3 (SOFTWARE)
05: AE4 (SOFTWARE)
06: AE5 (SOFTWARE)
07: AE6 (SOFTWARE)
08: AE7 (SOFTWARE)
09: AE9 (SOFTWARE)
10: AF2 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC6
SOFTWARE
HIS C:192 , HIS C:215 , HIS C:224 , ZN C:513 , HOH C:615
binding site for residue ZN C 512
02
AC7
SOFTWARE
HIS C:377 , HIS C:381 , HIS C:404 , ZN C:512 , HOH C:615
binding site for residue ZN C 513
03
AE2
SOFTWARE
ARG C:37 , LEU C:92 , ARG C:93 , ASN C:96
binding site for Poly-Saccharide residues NAG C 501 through FUC C 503 bound to ASN C 96
04
AE3
SOFTWARE
ASP A:421 , ASN C:104 , TRP C:117 , ARG C:125
binding site for Mono-Saccharide NAG C 504 bound to ASN C 104
05
AE4
SOFTWARE
ARG C:28 , ASN C:181
binding site for Poly-Saccharide residues NAG C 505 through FUC C 506 bound to ASN C 181
06
AE5
SOFTWARE
ARG C:164 , SER C:292 , ASP C:295 , TYR C:296 , ASN C:304 , ASP C:308
binding site for Poly-Saccharide residues NAG C 507 through NAG C 508 bound to ASN C 304
07
AE6
SOFTWARE
ASN C:350
binding site for Poly-Saccharide residues NAG C 509 through NAG C 510 bound to ASN C 350
08
AE7
SOFTWARE
GLY C:317 , ASN C:318 , ALA C:320 , ASN C:385 , GLY C:386
binding site for Mono-Saccharide NAG C 511 bound to ASN C 385
09
AE9
SOFTWARE
GLU A:428 , ASN C:419 , ASP C:421 , SER C:423 , ARG C:436 , ARG D:28 , PHE D:179 , ASN D:181
binding site for Poly-Saccharide residues NAG D 504 through MAN D 508 bound to ASN D 181
10
AF2
SOFTWARE
LEU C:45 , SER C:46 , ARG C:62 , GLY C:111 , ARG C:118 , GLY C:119 , GLN C:124 , GLN D:78 , ASN D:350
binding site for Poly-Saccharide residues NAG D 511 through MAN D 515 bound to ASN D 350
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(, 0)
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
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CATH Domains
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Pfam Domains
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Chain C
Asymmetric Unit 1
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select chains 'A' and 'C'
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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select non-helix/non-sheet protein parts
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show SS bonds with a radius of 100 units (=0.4Å)
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Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
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Show PDB file:
Asym.Unit (318 KB)
Header - Asym.Unit
Biol.Unit 1 (81 KB)
Header - Biol.Unit 1
Biol.Unit 2 (81 KB)
Header - Biol.Unit 2
Biol.Unit 3 (81 KB)
Header - Biol.Unit 3
Biol.Unit 4 (82 KB)
Header - Biol.Unit 4
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