PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
5M8G
Asym. Unit
Info
Asym.Unit (765 KB)
Biol.Unit 1 (751 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
TUBULIN-MTD265 COMPLEX
Authors
:
T. Bohnacker, A. E. Prota, M. O. Steinmetz, M. P. Wymann
Date
:
28 Oct 16 (Deposition) - 22 Feb 17 (Release) - 22 Mar 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.15
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C,D,E,F (1x)
Keywords
:
Cell Cycle, Tubulin Fold, Cytoskeleton, Microtubule
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. Bohnacker, A. E. Prota, F. Beaufils, J. E. Burke, A. Melone, A. J. Inglis, D. Rageot, A. M. Sele, V. Cmiljanovic, N. Cmiljanovic, K. Bargsten, A. Aher, A. Akhmanova, J. F. Diaz, D. Fabbro, M. Zvelebil, R. L. Williams, M. O. Steinmetz, M. P. Wymann
Deconvolution Of Buparlisib'S Mechanism Of Action Defines Specific Pi3K And Tubulin Inhibitors For Therapeutic Intervention.
Nat Commun V. 8 14683 2017
[
close entry info
]
Hetero Components
(8, 20)
Info
All Hetero Components
1a: 5-(2-MORPHOLIN-4-YL-6-PYRROLIDIN-1... (918a)
1b: 5-(2-MORPHOLIN-4-YL-6-PYRROLIDIN-1... (918b)
2a: PHOSPHOMETHYLPHOSPHONIC ACID ADENY... (ACPa)
3a: CALCIUM ION (CAa)
3b: CALCIUM ION (CAb)
3c: CALCIUM ION (CAc)
3d: CALCIUM ION (CAd)
3e: CALCIUM ION (CAe)
4a: GUANOSINE-5'-DIPHOSPHATE (GDPa)
4b: GUANOSINE-5'-DIPHOSPHATE (GDPb)
5a: GLYCEROL (GOLa)
6a: GUANOSINE-5'-TRIPHOSPHATE (GTPa)
6b: GUANOSINE-5'-TRIPHOSPHATE (GTPb)
7a: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESa)
7b: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESb)
8a: MAGNESIUM ION (MGa)
8b: MAGNESIUM ION (MGb)
8c: MAGNESIUM ION (MGc)
8d: MAGNESIUM ION (MGd)
8e: MAGNESIUM ION (MGe)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
918
2
Ligand/Ion
5-(2-MORPHOLIN-4-YL-6-PYRROLIDIN-1-YL-PYRIMIDIN-4-YL)-4-(TRIFLUOROMETHYL)PYRIDIN-2-AMINE
2
ACP
1
Ligand/Ion
PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER
3
CA
5
Ligand/Ion
CALCIUM ION
4
GDP
2
Ligand/Ion
GUANOSINE-5'-DIPHOSPHATE
5
GOL
1
Ligand/Ion
GLYCEROL
6
GTP
2
Ligand/Ion
GUANOSINE-5'-TRIPHOSPHATE
7
MES
2
Ligand/Ion
2-(N-MORPHOLINO)-ETHANESULFONIC ACID
8
MG
5
Ligand/Ion
MAGNESIUM ION
[
close Hetero Component info
]
Sites
(20, 20)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
20: AE2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLY A:10 , GLN A:11 , ALA A:12 , GLN A:15 , ASP A:98 , ALA A:99 , ASN A:101 , SER A:140 , GLY A:143 , GLY A:144 , THR A:145 , GLY A:146 , VAL A:177 , SER A:178 , THR A:179 , GLU A:183 , ASN A:206 , TYR A:224 , ASN A:228 , ILE A:231 , MG A:502 , HOH A:605 , HOH A:609 , HOH A:630 , HOH A:648 , HOH A:663 , LYS B:254
binding site for residue GTP A 501
02
AC2
SOFTWARE
GTP A:501 , HOH A:609 , HOH A:614 , HOH A:630 , HOH A:663
binding site for residue MG A 502
03
AC3
SOFTWARE
ASP A:39 , THR A:41 , GLY A:44 , GLU A:55 , HOH A:602
binding site for residue CA A 503
04
AC4
SOFTWARE
HOH A:666 , HOH A:682 , HOH E:204
binding site for residue CA A 504
05
AC5
SOFTWARE
ASN A:216 , PRO A:274 , VAL A:275 , ILE A:276 , ASN A:300 , HOH A:643
binding site for residue GOL A 505
06
AC6
SOFTWARE
ASN A:101 , THR A:179 , VAL B:238 , CYS B:241 , LEU B:248 , LEU B:255 , ASN B:258 , MET B:259 , VAL B:315 , ASN B:349 , LYS B:352 , ALA B:354 , ILE B:378 , HOH B:626 , HOH B:653
binding site for residue 918 B 501
07
AC7
SOFTWARE
GLY B:10 , GLN B:11 , CYS B:12 , GLN B:15 , SER B:140 , GLY B:143 , GLY B:144 , THR B:145 , GLY B:146 , VAL B:177 , ASP B:179 , GLU B:183 , ASN B:206 , TYR B:224 , ASN B:228 , MG B:503 , HOH B:605 , HOH B:610 , HOH B:622 , HOH B:636 , HOH B:642 , HOH B:649 , HOH B:671
binding site for residue GDP B 502
08
AC8
SOFTWARE
GLN B:11 , GDP B:502 , HOH B:607 , HOH B:641 , HOH B:671 , HOH C:657
binding site for residue MG B 503
09
AC9
SOFTWARE
HOH B:657 , GLU C:220
binding site for residue CA B 504
10
AD1
SOFTWARE
GLU B:113 , TYR C:282
binding site for residue CA B 505
11
AD2
SOFTWARE
HOH A:615 , ARG B:158 , PRO B:162 , ASP B:163 , ARG B:164 , ASN B:197 , ASP B:199 , ARG B:253
binding site for residue MES B 506
12
AD3
SOFTWARE
GLY C:10 , GLN C:11 , ALA C:12 , GLN C:15 , ASP C:98 , ALA C:99 , ALA C:100 , ASN C:101 , SER C:140 , GLY C:143 , GLY C:144 , THR C:145 , GLY C:146 , VAL C:177 , SER C:178 , THR C:179 , GLU C:183 , ASN C:206 , TYR C:224 , ASN C:228 , ILE C:231 , MG C:502 , HOH C:611 , HOH C:618 , HOH C:621 , HOH C:627 , HOH C:647 , HOH C:672 , HOH C:680 , HOH C:698 , LYS D:254
binding site for residue GTP C 501
13
AD4
SOFTWARE
GTP C:501 , HOH C:621 , HOH C:627 , HOH C:647 , HOH C:672
binding site for residue MG C 502
14
AD5
SOFTWARE
ASP C:39 , THR C:41 , GLY C:44 , GLU C:55 , HOH C:603
binding site for residue CA C 503
15
AD6
SOFTWARE
ASN C:101 , TYR D:202 , VAL D:238 , CYS D:241 , LEU D:248 , LEU D:255 , ASN D:258 , MET D:259 , VAL D:315 , ALA D:316 , ASN D:349 , ASN D:350 , LYS D:352 , ALA D:354 , ILE D:378 , HOH D:613
binding site for residue 918 D 501
16
AD7
SOFTWARE
GLY D:10 , GLN D:11 , CYS D:12 , GLN D:15 , SER D:140 , GLY D:143 , GLY D:144 , THR D:145 , GLY D:146 , VAL D:177 , GLU D:183 , ASN D:206 , TYR D:224 , ASN D:228 , MG D:503 , HOH D:606 , HOH D:626 , HOH D:631 , HOH D:638
binding site for residue GDP D 502
17
AD8
SOFTWARE
GLN D:11 , GDP D:502 , HOH D:626 , HOH D:638
binding site for residue MG D 503
18
AD9
SOFTWARE
HOH C:636 , ARG D:158 , PRO D:162 , ASP D:163 , ARG D:164 , ASN D:197 , ASP D:199 , ARG D:253
binding site for residue MES D 504
19
AE1
SOFTWARE
GLU F:331 , ASN F:333 , ACP F:402
binding site for residue MG F 401
20
AE2
SOFTWARE
LYS F:74 , LYS F:150 , GLN F:183 , LYS F:184 , TYR F:185 , LEU F:186 , LYS F:198 , ASP F:200 , ARG F:222 , HIS F:239 , LEU F:240 , THR F:241 , ASN F:242 , ASP F:318 , GLU F:331 , ASN F:333 , MG F:401
binding site for residue ACP F 402
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Chain E
Chain F
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (765 KB)
Header - Asym.Unit
Biol.Unit 1 (751 KB)
Header - Biol.Unit 1
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
5M8G
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help