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5M7E
Asym. Unit
Info
Asym.Unit (764 KB)
Biol.Unit 1 (750 KB)
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(1)
Title
:
TUBULIN-BKM120 COMPLEX
Authors
:
T. Bohnacker, A. E. Prota, M. O. Steinmetz, M. P. Wymann
Date
:
27 Oct 16 (Deposition) - 22 Feb 17 (Release) - 22 Mar 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.05
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C,D,E,F (1x)
Keywords
:
Cell Cycle, Tubulin Fold, Cytoskeleton, Microtubule
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. Bohnacker, A. E. Prota, F. Beaufils, J. E. Burke, A. Melone, A. J. Inglis, D. Rageot, A. M. Sele, V. Cmiljanovic, N. Cmiljanovic, K. Bargsten, A. Aher, A. Akhmanova, J. F. Diaz, D. Fabbro, M. Zvelebil, R. L. Williams, M. O. Steinmetz, M. P. Wymann
Deconvolution Of Buparlisib'S Mechanism Of Action Defines Specific Pi3K And Tubulin Inhibitors For Therapeutic Intervention.
Nat Commun V. 8 14683 2017
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Hetero Components
(8, 18)
Info
All Hetero Components
1a: PHOSPHOMETHYLPHOSPHONIC ACID ADENY... (ACPa)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
2c: CALCIUM ION (CAc)
3a: GUANOSINE-5'-DIPHOSPHATE (GDPa)
3b: GUANOSINE-5'-DIPHOSPHATE (GDPb)
4a: GLYCEROL (GOLa)
4b: GLYCEROL (GOLb)
4c: GLYCEROL (GOLc)
5a: GUANOSINE-5'-TRIPHOSPHATE (GTPa)
5b: GUANOSINE-5'-TRIPHOSPHATE (GTPb)
6a: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESa)
7a: MAGNESIUM ION (MGa)
7b: MAGNESIUM ION (MGb)
7c: MAGNESIUM ION (MGc)
7d: MAGNESIUM ION (MGd)
7e: MAGNESIUM ION (MGe)
8a: 5-[2,6-DI(MORPHOLIN-4-YL)PYRIMIDIN... (SD5a)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACP
1
Ligand/Ion
PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER
2
CA
3
Ligand/Ion
CALCIUM ION
3
GDP
2
Ligand/Ion
GUANOSINE-5'-DIPHOSPHATE
4
GOL
3
Ligand/Ion
GLYCEROL
5
GTP
2
Ligand/Ion
GUANOSINE-5'-TRIPHOSPHATE
6
MES
1
Ligand/Ion
2-(N-MORPHOLINO)-ETHANESULFONIC ACID
7
MG
5
Ligand/Ion
MAGNESIUM ION
8
SD5
1
Ligand/Ion
5-[2,6-DI(MORPHOLIN-4-YL)PYRIMIDIN-4-YL]-4-(TRIFLUOROMETHYL)PYRIDIN-2-AMINE
[
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]
Sites
(18, 18)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLY A:10 , GLN A:11 , ALA A:12 , GLN A:15 , ASP A:98 , ALA A:99 , ALA A:100 , ASN A:101 , SER A:140 , GLY A:143 , GLY A:144 , THR A:145 , GLY A:146 , VAL A:177 , SER A:178 , THR A:179 , GLU A:183 , ASN A:206 , TYR A:224 , ASN A:228 , ILE A:231 , MG A:502 , HOH A:617 , HOH A:622 , HOH A:646 , HOH A:650 , HOH A:694 , HOH A:696 , HOH A:702 , LYS B:254
binding site for residue GTP A 501
02
AC2
SOFTWARE
GTP A:501 , HOH A:617 , HOH A:646 , HOH A:650 , HOH A:694
binding site for residue MG A 502
03
AC3
SOFTWARE
ASP A:39 , THR A:41 , GLY A:44 , GLU A:55 , HOH A:627
binding site for residue CA A 503
04
AC4
SOFTWARE
ASN A:216 , PRO A:274 , VAL A:275 , ILE A:276 , ASN A:300 , HOH A:648 , HOH A:677
binding site for residue GOL A 504
05
AC5
SOFTWARE
GLY B:10 , GLN B:11 , CYS B:12 , GLN B:15 , SER B:140 , GLY B:143 , GLY B:144 , THR B:145 , GLY B:146 , PRO B:173 , VAL B:177 , ASP B:179 , GLU B:183 , ASN B:206 , TYR B:224 , ASN B:228 , MG B:502 , HOH B:621 , HOH B:626 , HOH B:630 , HOH B:635 , HOH B:647 , HOH B:672 , HOH B:689
binding site for residue GDP B 501
06
AC6
SOFTWARE
GLN B:11 , GDP B:501 , HOH B:601 , HOH B:656 , HOH B:689 , HOH B:721 , HOH C:618
binding site for residue MG B 502
07
AC7
SOFTWARE
GLU B:113 , HOH B:612 , HOH B:642 , HOH C:770
binding site for residue CA B 503
08
AC8
SOFTWARE
ARG B:158 , PRO B:162 , ASP B:163 , ARG B:164 , MET B:166 , ASN B:197 , ASP B:199 , ARG B:253
binding site for residue MES B 504
09
AC9
SOFTWARE
ASN A:101 , THR A:179 , VAL A:181 , VAL B:238 , CYS B:241 , LEU B:248 , LEU B:255 , ASN B:258 , MET B:259 , VAL B:315 , ASN B:349 , ASN B:350 , LYS B:352 , ALA B:354 , ILE B:378 , HOH B:654 , HOH B:657
binding site for residue SD5 B 505
10
AD1
SOFTWARE
GLY C:10 , GLN C:11 , ALA C:12 , GLN C:15 , ASP C:98 , ALA C:99 , ALA C:100 , ASN C:101 , SER C:140 , GLY C:143 , GLY C:144 , THR C:145 , GLY C:146 , VAL C:177 , THR C:179 , GLU C:183 , ASN C:206 , TYR C:224 , ASN C:228 , ILE C:231 , MG C:502 , HOH C:614 , HOH C:639 , HOH C:645 , HOH C:654 , HOH C:694 , HOH C:699 , HOH C:741 , LYS D:254
binding site for residue GTP C 501
11
AD2
SOFTWARE
GTP C:501 , HOH C:636 , HOH C:645 , HOH C:654 , HOH C:741
binding site for residue MG C 502
12
AD3
SOFTWARE
ASP C:39 , THR C:41 , GLY C:44 , GLU C:55 , HOH C:603
binding site for residue CA C 503
13
AD4
SOFTWARE
GLY D:10 , GLN D:11 , CYS D:12 , GLN D:15 , SER D:140 , GLY D:143 , GLY D:144 , THR D:145 , GLY D:146 , VAL D:177 , SER D:178 , GLU D:183 , ASN D:206 , TYR D:224 , ASN D:228 , MG D:502 , HOH D:608 , HOH D:654 , HOH D:665
binding site for residue GDP D 501
14
AD5
SOFTWARE
GLN D:11 , GDP D:501 , HOH D:635 , HOH D:665
binding site for residue MG D 502
15
AD6
SOFTWARE
GLU F:331 , ACP F:402
binding site for residue MG F 401
16
AD7
SOFTWARE
LYS F:74 , ILE F:148 , LYS F:150 , GLN F:183 , LYS F:184 , TYR F:185 , LEU F:186 , LYS F:198 , ASP F:200 , LEU F:240 , THR F:241 , ASN F:242 , ASP F:318 , GLU F:331 , ASN F:333 , MG F:401
binding site for residue ACP F 402
17
AD8
SOFTWARE
TYR F:211 , MET F:296 , LEU F:378 , HIS F:379
binding site for residue GOL F 403
18
AD9
SOFTWARE
SER D:341 , ARG F:292 , LYS F:377 , LEU F:378 , HIS F:379
binding site for residue GOL F 404
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(0, 0)
Info
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
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all PFAM domains
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Chain F
Asymmetric Unit 1
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select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
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