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5M32
Asym. Unit
Info
Asym.Unit (1.4 MB)
Biol.Unit 1, α-C (1.4 MB)
Biol.Unit 1 (1.4 MB)
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(1)
Title
:
HUMAN 26S PROTEASOME IN COMPLEX WITH OPROZOMIB
Authors
:
D. Haselbach, J. Schrader, F. Lambrecht, F. Henneberg, A. Chari, H. Sta
Date
:
14 Oct 16 (Deposition) - 05 Jul 17 (Release) - 05 Jul 17 (Revision)
Method
:
ELECTRON MICROSCOPY
Resolution
:
3.80
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,a,b,c,d,e,f,g,h,i,j,k,l,m,n,o,p,q,r,s,t,u
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,a,b,c,d,e,f,g,h,i,j,k,l,m,n,o,p,q,r,s,t,u (1x)
Keywords
:
Proteasome, Oprozomib, Ups, Drug-Binding, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. Haselbach, J. Schrader, F. Lambrecht, F. Henneberg, A. Chari, H. Stark
Long-Range Allosteric Regulation Of The Human 26S Proteasom By 20S Proteasome-Targeting Cancer Drugs.
Nat Commun V. 8 15578 2017
[
close entry info
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Hetero Components
(4, 14)
Info
All Hetero Components
1a: 2-METHYL-1,3-THIAZOLE-5-CARBOXYLIC... (6V9a)
1b: 2-METHYL-1,3-THIAZOLE-5-CARBOXYLIC... (6V9b)
2a: (3~{R},4~{S})-4-AZANYL-2-METHYL-5-... (6VAa)
2b: (3~{R},4~{S})-4-AZANYL-2-METHYL-5-... (6VAb)
3a: O-METHYL-L-SERINE (7C9a)
3b: O-METHYL-L-SERINE (7C9b)
3c: O-METHYL-L-SERINE (7C9c)
3d: O-METHYL-L-SERINE (7C9d)
4a: ADENOSINE-5'-DIPHOSPHATE (ADPa)
4b: ADENOSINE-5'-DIPHOSPHATE (ADPb)
4c: ADENOSINE-5'-DIPHOSPHATE (ADPc)
4d: ADENOSINE-5'-DIPHOSPHATE (ADPd)
4e: ADENOSINE-5'-DIPHOSPHATE (ADPe)
4f: ADENOSINE-5'-DIPHOSPHATE (ADPf)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
6V9
2
OTHER
2-METHYL-1,3-THIAZOLE-5-CARBOXYLIC ACID
2
6VA
2
OTHER
(3~{R},4~{S})-4-AZANYL-2-METHYL-5-PHENYL-PENTANE-2,3-DIOL
3
7C9
4
OTHER
O-METHYL-L-SERINE
4
ADP
6
Ligand/Ion
ADENOSINE-5'-DIPHOSPHATE
[
close Hetero Component info
]
Sites
(26, 26)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
20: AE2 (SOFTWARE)
21: AE3 (SOFTWARE)
22: AE4 (SOFTWARE)
23: AE5 (SOFTWARE)
24: AE6 (SOFTWARE)
25: AE7 (SOFTWARE)
26: AE8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP c:176 , VAL c:177 , GLY c:178 , GLY c:179 , GLY c:219 , THR c:220 , GLY c:221 , LYS c:222 , THR c:223 , ILE c:354 , GLY c:382 , ALA c:383 , ARG c:386 , ARG d:343 , ARG d:346
binding site for residue ADP c 501
02
AC2
SOFTWARE
ASP d:186 , ILE d:187 , GLY d:229 , GLY d:231 , LYS d:232 , THR d:233 , LEU d:234 , ILE d:364 , GLY d:392 , LYS d:396 , ARG h:307 , ARG h:310
binding site for residue ADP d 501
03
AC3
SOFTWARE
ILE e:167 , GLY e:168 , MET e:170 , GLY e:209 , CYS e:210 , GLY e:211 , LYS e:212 , THR e:213 , MET e:214 , GLY e:372 , ALA e:373 , ARG f:291
binding site for residue ADP e 501
04
AC4
SOFTWARE
GLY f:136 , LEU f:138 , GLY f:177 , THR f:178 , GLY f:179 , LYS f:180 , THR f:181 , LEU f:182 , ILE f:312 , HIS f:316 , ARG f:344 , ARG g:344 , ARG g:347
binding site for residue ADP g 501
05
AC5
SOFTWARE
ASP g:187 , ILE g:188 , GLY g:189 , THR g:231 , GLY g:232 , LYS g:233 , THR g:234 , LEU g:235 , ASN g:333 , ILE g:365 , HIS g:369 , GLY g:393 , LYS g:397
binding site for residue ADP g 502
06
AC6
SOFTWARE
MET h:150 , ILE h:151 , GLY h:152 , PRO h:192 , GLY h:193 , THR h:194 , GLY h:195 , LYS h:196 , THR h:197 , GLU h:250 , ILE h:328 , HIS h:332 , GLY h:356 , LYS h:360
binding site for residue ADP h 401
07
AC7
SOFTWARE
THR K:1 , ARG K:19 , ALA K:20 , THR K:21 , VAL K:31 , MET K:45 , ALA K:46 , GLY K:47 , ALA K:49 , CYS K:52 , SER K:130 , TYR K:169 , ASP L:125 , VAL L:127
binding site for Ligand residues 6VA t 4 through 6V9 t 1 bound to THR K 1
08
AC8
SOFTWARE
THR K:1 , ARG K:19 , ALA K:20 , THR K:21 , VAL K:31 , MET K:45 , ALA K:46 , GLY K:47 , ALA K:49 , CYS K:52 , SER K:130 , TYR K:169 , 7C9 t:3
binding site for Ligand 6VA t 4 bound to THR K 1
09
AC9
SOFTWARE
THR Y:1 , ARG Y:19 , ALA Y:20 , THR Y:21 , VAL Y:31 , MET Y:45 , ALA Y:46 , GLY Y:47 , ALA Y:49 , CYS Y:52 , SER Y:130 , TYR Y:169 , ASP Z:125
binding site for Ligand residues 6VA u 4 through 6V9 u 1 bound to THR Y 1
10
AD1
SOFTWARE
THR Y:1 , ARG Y:19 , ALA Y:20 , THR Y:21 , VAL Y:31 , MET Y:45 , ALA Y:46 , GLY Y:47 , ALA Y:49 , CYS Y:52 , SER Y:130 , TYR Y:169 , 7C9 u:3
binding site for Ligand 6VA u 4 bound to THR Y 1
11
AD2
SOFTWARE
ARG h:340 , THR m:204 , SER m:206 , GLU m:245
binding site for Ligand VAL m 205 bound to THR m 204
12
AD3
SOFTWARE
ARG h:340 , VAL m:182 , SER m:206 , THR m:207 , THR m:209 , SER m:210 , TYR m:211 , GLU m:212 , LEU m:213 , ASP m:215 , TYR m:216 , THR m:218 , PHE m:219
binding site for Ligand residues MET m 214 through PHE m 208 bound to SER m 206
13
AD4
SOFTWARE
ASN i:500 , LEU i:501 , GLN i:503 , ASP i:505 , ALA i:506 , VAL i:507 , GLY i:509 , GLU i:510 , ALA i:512
binding site for Di-peptide ASP i 504 and THR i 508
14
AD5
SOFTWARE
ASN i:500 , LEU i:501 , GLN i:503 , ASP i:505 , ALA i:506 , VAL i:507 , GLY i:509 , GLU i:510 , ALA i:512
binding site for Di-peptide ASP i 504 and THR i 508
15
AD6
SOFTWARE
VAL i:519 , MET i:520 , GLY i:522 , ALA i:553 , LEU i:554 , VAL i:555 , MET i:556 , GLY i:558
binding site for Di-peptide LEU i 521 and TYR i 557
16
AD7
SOFTWARE
MET i:520 , LEU i:521 , SER i:523 , LYS i:524 , LEU i:554 , VAL i:555 , MET i:556 , TYR i:557 , ARG i:559
binding site for Di-peptide GLY i 522 and GLY i 558
17
AD8
SOFTWARE
ILE i:544 , LEU i:545 , GLY i:547 , ALA i:549 , VAL i:550 , ILE i:552 , LEU i:570 , ILE i:577 , LEU i:578 , ARG i:579 , ARG i:580 , GLY i:582 , MET i:583 , TYR i:584 , THR i:585
binding site for Di-peptide LEU i 548 and SER i 581
18
AD9
SOFTWARE
GLU l:130 , LEU l:149 , GLY l:150 , SER l:151 , GLN l:152 , LEU l:154 , ARG l:155 , GLU l:156 , LYS l:158 , LYS l:159 , MET l:160 , ASP l:161
binding site for Di-peptide LEU l 153 and LEU l 157
19
AE1
SOFTWARE
PHE l:236 , TYR l:239 , SER l:241 , ILE l:242 , SER l:244 , PRO l:245 , ALA l:247 , ILE l:248 , THR l:249 , SER l:250
binding site for Di-peptide ASP l 243 and LYS l 246
20
AE2
SOFTWARE
ALA m:133 , GLY m:135 , HIS m:136 , ARG m:137 , LEU m:138 , LEU m:167 , ILE m:168 , GLU m:170 , GLY m:171
binding site for Di-peptide LEU m 134 and GLU m 169
21
AE3
SOFTWARE
ALA m:133 , GLY m:135 , HIS m:136 , ARG m:137 , LEU m:138 , LEU m:167 , ILE m:168 , GLU m:170 , GLY m:171
binding site for Di-peptide LEU m 134 and GLU m 169
22
AE4
SOFTWARE
ALA m:133 , GLY m:135 , HIS m:136 , ARG m:137 , LEU m:138 , LEU m:167 , ILE m:168 , GLU m:170 , GLY m:171
binding site for Di-peptide LEU m 134 and GLU m 169
23
AE5
SOFTWARE
GLN m:196 , ALA m:197 , GLU m:199 , LEU m:200 , PHE m:201 , ASP m:203 , THR m:204 , VAL m:226 , LEU m:231
binding site for Di-peptide ALA m 198 and LEU m 202
24
AE6
SOFTWARE
LYS m:195 , GLN m:196 , ALA m:197 , ALA m:198 , LEU m:200 , PHE m:201 , ASP m:203 , THR m:204 , LEU m:231
binding site for Di-peptide GLU m 199 and LEU m 202
25
AE7
SOFTWARE
ILE j:246 , ILE j:247 , ARG j:248 , LEU j:249 , HIS j:251 , ASN j:252 , VAL j:253 , ILE j:254 , SER j:319 , THR j:320 , GLU j:322 , PRO j:323 , LEU j:325 , VAL n:246 , LYS n:247 , ALA n:248 , PHE n:249 , LEU n:251 , LYS n:252 , THR n:253 , ASN n:254
binding site for Di-peptide TYR n 250 and ARG j 321
26
AE8
SOFTWARE
ILE j:247 , ARG j:248 , LEU j:249 , ARG j:250 , ASN j:252 , VAL j:253 , LYS j:255 , SER j:319 , ARG j:321 , LYS n:247 , ALA n:248 , PHE n:249 , TYR n:250 , LYS n:252 , THR n:253 , ASN n:254 , ASP n:255
binding site for Di-peptide LEU n 251 and THR j 320
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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SCOP Domains
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CATH Domains
(0, 0)
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Pfam Domains
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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Asym.Unit (1.4 MB)
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