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5LXT
Biol. Unit 1
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Asym.Unit (803 KB)
Biol.Unit 1 (788 KB)
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(1)
Title
:
TUBULIN-DISCODERMOLIDE COMPLEX
Authors
:
A. E. Prota, M. O. Steinmetz
Date
:
22 Sep 16 (Deposition) - 01 Mar 17 (Release) - 07 Jun 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C,D,E,F (1x)
Keywords
:
Cell Cycle, Tubulin Fold, Cytoskeleton, Microtubule, Discodermolide
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. E. Prota, K. Bargsten, M. Redondo-Horcajo, A. B. Smith, C. H. Yang, H. M. Mcdaid, I. Paterson, S. B. Horwitz, J. Fernando Diaz, M. O. Steinmetz
Structural Basis Of Microtubule Stabilization By Discodermolide.
Chembiochem V. 18 905 2017
[
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Hetero Components
(5, 8)
Info
All Hetero Components
1a: (+)-DISCODERMOLIDE (7AKa)
1b: (+)-DISCODERMOLIDE (7AKb)
2a: PHOSPHOMETHYLPHOSPHONIC ACID ADENY... (ACPa)
3a: CALCIUM ION (CAa)
3b: CALCIUM ION (CAb)
3c: CALCIUM ION (CAc)
3d: CALCIUM ION (CAd)
4a: GUANOSINE-5'-DIPHOSPHATE (GDPa)
4b: GUANOSINE-5'-DIPHOSPHATE (GDPb)
5a: GUANOSINE-5'-TRIPHOSPHATE (GTPa)
5b: GUANOSINE-5'-TRIPHOSPHATE (GTPb)
6a: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESa)
7a: MAGNESIUM ION (MGa)
7b: MAGNESIUM ION (MGb)
7c: MAGNESIUM ION (MGc)
7d: MAGNESIUM ION (MGd)
7e: MAGNESIUM ION (MGe)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
7AK
2
Ligand/Ion
(+)-DISCODERMOLIDE
2
ACP
1
Ligand/Ion
PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER
3
CA
-1
Ligand/Ion
CALCIUM ION
4
GDP
2
Ligand/Ion
GUANOSINE-5'-DIPHOSPHATE
5
GTP
2
Ligand/Ion
GUANOSINE-5'-TRIPHOSPHATE
6
MES
1
Ligand/Ion
2-(N-MORPHOLINO)-ETHANESULFONIC ACID
7
MG
-1
Ligand/Ion
MAGNESIUM ION
[
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Sites
(17, 17)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLY A:10 , GLN A:11 , ALA A:12 , GLN A:15 , ASP A:98 , ALA A:99 , ALA A:100 , ASN A:101 , SER A:140 , GLY A:143 , GLY A:144 , THR A:145 , GLY A:146 , VAL A:177 , GLU A:183 , ASN A:206 , TYR A:224 , ASN A:228 , ILE A:231 , MG A:502 , HOH A:659 , HOH A:665 , HOH A:678 , HOH A:686 , HOH A:761 , HOH A:780 , LYS B:254
binding site for residue GTP A 501
02
AC2
SOFTWARE
GTP A:501 , HOH A:640 , HOH A:678 , HOH A:686 , HOH A:780
binding site for residue MG A 502
03
AC3
SOFTWARE
ASP A:39 , THR A:41 , GLY A:44 , GLU A:55 , HOH A:622
binding site for residue CA A 503
04
AC4
SOFTWARE
HOH A:681 , HOH A:813 , HOH A:850 , HOH E:211 , HOH E:301
binding site for residue CA A 504
05
AC5
SOFTWARE
GLY B:10 , GLN B:11 , CYS B:12 , GLN B:15 , SER B:140 , GLY B:143 , GLY B:144 , THR B:145 , GLY B:146 , PRO B:173 , VAL B:177 , ASP B:179 , GLU B:183 , ASN B:206 , TYR B:224 , ASN B:228 , MG B:502 , HOH B:638 , HOH B:648 , HOH B:649 , HOH B:662 , HOH B:692 , HOH B:699 , HOH B:719 , HOH B:727 , HOH B:773
binding site for residue GDP B 501
06
AC6
SOFTWARE
GLN B:11 , GDP B:501 , HOH B:620 , HOH B:692 , HOH B:727 , HOH B:866 , HOH C:701
binding site for residue MG B 502
07
AC7
SOFTWARE
GLU B:113 , HOH B:667 , HOH B:822 , GLU C:284 , HOH C:629 , HOH C:688
binding site for residue CA B 503
08
AC8
SOFTWARE
TRP A:407 , ARG B:158 , ASP B:163 , ARG B:164 , ASN B:197 , ASP B:199 , ARG B:253 , HOH B:650 , HOH B:813
binding site for residue MES B 504
09
AC9
SOFTWARE
LEU B:217 , ASP B:226 , HIS B:229 , PRO B:274 , LEU B:275 , THR B:276 , ARG B:278 , GLN B:282 , ARG B:369 , GLY B:370 , LEU B:371 , HOH B:689 , HOH B:728 , HOH B:812
binding site for residue 7AK B 505
10
AD1
SOFTWARE
GLY C:10 , GLN C:11 , ALA C:12 , GLN C:15 , ASP C:98 , ALA C:99 , ASN C:101 , SER C:140 , GLY C:143 , GLY C:144 , THR C:145 , GLY C:146 , VAL C:177 , GLU C:183 , ASN C:206 , TYR C:224 , ASN C:228 , ILE C:231 , MG C:502 , HOH C:639 , HOH C:693 , HOH C:703 , HOH C:708 , HOH C:712 , HOH C:724 , HOH C:743 , HOH C:868 , LYS D:254
binding site for residue GTP C 501
11
AD2
SOFTWARE
GTP C:501 , HOH C:657 , HOH C:712 , HOH C:724 , HOH C:868
binding site for residue MG C 502
12
AD3
SOFTWARE
ASP C:39 , THR C:41 , GLY C:44 , GLU C:55 , HOH C:621
binding site for residue CA C 503
13
AD4
SOFTWARE
GLY D:10 , GLN D:11 , CYS D:12 , GLN D:15 , SER D:140 , GLY D:143 , GLY D:144 , THR D:145 , GLY D:146 , VAL D:177 , SER D:178 , GLU D:183 , ASN D:206 , TYR D:224 , ASN D:228 , MG D:502 , HOH D:603 , HOH D:667 , HOH D:668 , HOH D:679 , HOH D:691 , HOH D:703
binding site for residue GDP D 501
14
AD5
SOFTWARE
GLN D:11 , GDP D:501 , HOH D:703 , HOH D:770 , HOH D:792
binding site for residue MG D 502
15
AD6
SOFTWARE
LEU D:217 , ASP D:226 , HIS D:229 , LEU D:230 , PRO D:274 , LEU D:275 , THR D:276 , ARG D:278 , ARG D:369 , LEU D:371 , HOH D:690
binding site for residue 7AK D 503
16
AD7
SOFTWARE
LYS F:74 , LYS F:150 , GLN F:183 , LYS F:184 , TYR F:185 , LEU F:186 , LYS F:198 , ARG F:222 , HIS F:239 , THR F:241 , ASN F:242 , ASP F:318 , MET F:320 , ILE F:330 , GLU F:331 , ASN F:333 , MG F:402
binding site for residue ACP F 401
17
AD8
SOFTWARE
GLU F:331 , ASN F:333 , ACP F:401
binding site for residue MG F 402
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
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CATH Domains
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Asymmetric Unit 1
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Asym.Unit (803 KB)
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