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5LVP
Asym. Unit
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Asym.Unit (405 KB)
Biol.Unit 1 (101 KB)
Biol.Unit 2 (103 KB)
Biol.Unit 3 (101 KB)
Biol.Unit 4 (103 KB)
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Title
:
HUMAN PDK1 KINASE DOMAIN IN COMPLEX WITH AN HM-PEPTIDE BOUND TO THE PIF-POCKET
Authors
:
J. O. Schulze, G. Saladino, K. Busschots, S. Neimanis, E. Suess, D. Odad S. Zeuzem, V. Hindie, A. K. Herbrand, M. N. Lisa, P. M. Alzari, F. L. Gerv R. M. Biondi
Date
:
14 Sep 16 (Deposition) - 19 Oct 16 (Release) - 02 Nov 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,F (1x)
Biol. Unit 2: B,G (1x)
Biol. Unit 3: C,E (1x)
Biol. Unit 4: D,H (1x)
Keywords
:
Protein Kinase, Allosteric Regulation, Small Compounds, Pif-Pocket, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. O. Schulze, G. Saladino, K. Busschots, S. Neimanis, E. Su, D. Odadzic, S. Zeuzem, V. Hindie, A. K. Herbrand, M. N. Lisa, P. M. Alzari, F. L. Gervasio, R. M. Biondi
Bidirectional Allosteric Communication Between The Atp-Binding Site And The Regulatory Pif Pocket In Pdk1 Protein Kinase.
Cell Chem Biol V. 23 1193 2016
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Hetero Components
(3, 14)
Info
All Hetero Components
1a: ADENOSINE-5'-TRIPHOSPHATE (ATPa)
1b: ADENOSINE-5'-TRIPHOSPHATE (ATPb)
1c: ADENOSINE-5'-TRIPHOSPHATE (ATPc)
1d: ADENOSINE-5'-TRIPHOSPHATE (ATPd)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
3a: PHOSPHOSERINE (SEPa)
3b: PHOSPHOSERINE (SEPb)
3c: PHOSPHOSERINE (SEPc)
3d: PHOSPHOSERINE (SEPd)
3e: PHOSPHOSERINE (SEPe)
3f: PHOSPHOSERINE (SEPf)
3g: PHOSPHOSERINE (SEPg)
3h: PHOSPHOSERINE (SEPh)
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Label:
No.
Name
Count
Type
Full Name
1
ATP
4
Ligand/Ion
ADENOSINE-5'-TRIPHOSPHATE
2
CL
2
Ligand/Ion
CHLORIDE ION
3
SEP
8
Mod. Amino Acid
PHOSPHOSERINE
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Sites
(13, 13)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLY A:89 , GLY A:91 , SER A:92 , SER A:94 , VAL A:96 , ALA A:109 , LYS A:111 , SER A:160 , ALA A:162 , GLU A:166 , LEU A:212 , HOH A:609
binding site for residue ATP A 500
02
AC2
SOFTWARE
GLY B:89 , GLY B:91 , SER B:92 , SER B:94 , VAL B:96 , ALA B:109 , LYS B:111 , SER B:160 , ALA B:162 , GLU B:166 , LEU B:212 , HOH B:519 , HOH B:536 , HOH B:549
binding site for residue ATP B 401
03
AC3
SOFTWARE
GLY C:89 , GLY C:91 , SER C:92 , SER C:94 , VAL C:96 , ALA C:109 , LYS C:111 , SER C:160 , ALA C:162 , GLU C:166 , GLU C:209 , LEU C:212 , HOH C:504 , HOH C:508 , HOH C:537
binding site for residue ATP C 401
04
AC4
SOFTWARE
LYS C:144
binding site for residue CL C 402
05
AC5
SOFTWARE
GLY D:89 , GLU D:90 , GLY D:91 , SER D:92 , SER D:94 , VAL D:96 , ALA D:109 , LYS D:111 , SER D:160 , ALA D:162 , GLU D:166 , LEU D:212
binding site for residue ATP D 500
06
AC6
SOFTWARE
ARG C:131 , THR C:148 , PHE C:149 , GLN C:150 , PHE E:8 , PRO E:9 , GLN E:10 , TYR E:13
binding site for Di-peptide PHE E 11 and SEP E 12
07
AC7
SOFTWARE
LEU C:145 , PHE C:147 , THR C:148 , GLN C:150 , PHE E:8 , GLN E:10 , PHE E:11 , SER E:14
binding site for Di-peptide SEP E 12 and TYR E 13
08
AC8
SOFTWARE
ARG A:131 , THR A:148 , PHE A:149 , GLN A:150 , PHE A:157 , PHE F:8 , PRO F:9 , GLN F:10 , TYR F:13
binding site for Di-peptide PHE F 11 and SEP F 12
09
AC9
SOFTWARE
SER A:135 , PHE A:147 , THR A:148 , GLN A:150 , PRO F:9 , GLN F:10 , PHE F:11 , SER F:14
binding site for Di-peptide SEP F 12 and TYR F 13
10
AD1
SOFTWARE
ARG B:131 , THR B:148 , GLN B:150 , PHE B:157 , HOH B:547 , PHE G:8 , PRO G:9 , GLN G:10 , TYR G:13
binding site for Di-peptide PHE G 11 and SEP G 12
11
AD2
SOFTWARE
PHE B:147 , THR B:148 , GLN B:150 , HOH B:547 , PRO G:9 , GLN G:10 , PHE G:11 , SER G:14
binding site for Di-peptide SEP G 12 and TYR G 13
12
AD3
SOFTWARE
ARG D:131 , THR D:148 , PHE D:149 , GLN D:150 , LEU D:155 , PHE D:157 , PHE H:8 , PRO H:9 , GLN H:10 , TYR H:13
binding site for Di-peptide PHE H 11 and SEP H 12
13
AD4
SOFTWARE
SER D:135 , LEU D:145 , THR D:148 , GLN D:150 , GLN H:10 , PHE H:11 , SER H:14
binding site for Di-peptide SEP H 12 and TYR H 13
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SAPs(SNPs)/Variants
(0, 0)
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Exons
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Asymmetric Unit 1
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Asym.Unit (405 KB)
Header - Asym.Unit
Biol.Unit 1 (101 KB)
Header - Biol.Unit 1
Biol.Unit 2 (103 KB)
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Biol.Unit 3 (101 KB)
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Biol.Unit 4 (103 KB)
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