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5LS6
Biol. Unit 1
Info
Asym.Unit (728 KB)
Biol.Unit 1 (189 KB)
Biol.Unit 2 (189 KB)
Biol.Unit 3 (190 KB)
Biol.Unit 4 (188 KB)
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(1)
Title
:
STRUCTURE OF HUMAN POLYCOMB REPRESSIVE COMPLEX 2 (PRC2) WITH INHIBITOR
Authors
:
Y. Zhang, N. Justin, S. Chen, J. Wilson, S. Gamblin
Date
:
22 Aug 16 (Deposition) - 22 Feb 17 (Release) - 22 Feb 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.47
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,Q,R,S,T
Biol. Unit 1: A,B,C,Q (1x)
Biol. Unit 2: D,E,F,R (1x)
Biol. Unit 3: G,H,I,S (1x)
Biol. Unit 4: J,K,L,T (1x)
Keywords
:
Human Prc2, Inhibitor, H3K27, Transferase-Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. G. Vaswani, V. S. Gehling, L. A. Dakin, A. S. Cook, C. G. Nasveschuk, M. Duplessis, P. Iyer, S. Balasubramanian, F. Zhao, A. C. Good, R. Campbell, C. Lee, N. Cantone, R. T. Cummings, E. Normant, S. F. Bellon, B. K. Albrecht, J. C. Harmange, P. Trojer, J. E. Audia, Y. Zhang, N. Justin, S. Chen, J. R. Wilson, S. J. Gamblin
Identification Of (R)-N-((4-Methoxy-6-Methyl-2-Oxo-1, 2-Dihydropyridin-3-Yl) Methyl)-2-Methyl-1-(1-(1-(2, 2, 2-Trifluoroethyl) Piperidin-4-Yl)Ethyl)-1H-Indole-3-Carboxamide (Cpi-1205), A Potent And Selective Inhibitor Of Histone Methyltransferase Ezh2, Suitable For Phase I Clinical Trials For B-Cell Lymphomas.
J. Med. Chem. V. 59 9928 2016
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Hetero Components
(2, 2)
Info
All Hetero Components
1a: 1-[(1~{R})-1-[1-[2,2-BIS(FLUORANYL... (74Da)
1b: 1-[(1~{R})-1-[1-[2,2-BIS(FLUORANYL... (74Db)
1c: 1-[(1~{R})-1-[1-[2,2-BIS(FLUORANYL... (74Dc)
1d: 1-[(1~{R})-1-[1-[2,2-BIS(FLUORANYL... (74Dd)
2a: N-TRIMETHYLLYSINE (M3La)
2b: N-TRIMETHYLLYSINE (M3Lb)
2c: N-TRIMETHYLLYSINE (M3Lc)
2d: N-TRIMETHYLLYSINE (M3Ld)
3a: ZINC ION (ZNa)
3aa: ZINC ION (ZNaa)
3ab: ZINC ION (ZNab)
3ac: ZINC ION (ZNac)
3ad: ZINC ION (ZNad)
3ae: ZINC ION (ZNae)
3af: ZINC ION (ZNaf)
3b: ZINC ION (ZNb)
3c: ZINC ION (ZNc)
3d: ZINC ION (ZNd)
3e: ZINC ION (ZNe)
3f: ZINC ION (ZNf)
3g: ZINC ION (ZNg)
3h: ZINC ION (ZNh)
3i: ZINC ION (ZNi)
3j: ZINC ION (ZNj)
3k: ZINC ION (ZNk)
3l: ZINC ION (ZNl)
3m: ZINC ION (ZNm)
3n: ZINC ION (ZNn)
3o: ZINC ION (ZNo)
3p: ZINC ION (ZNp)
3q: ZINC ION (ZNq)
3r: ZINC ION (ZNr)
3s: ZINC ION (ZNs)
3t: ZINC ION (ZNt)
3u: ZINC ION (ZNu)
3v: ZINC ION (ZNv)
3w: ZINC ION (ZNw)
3x: ZINC ION (ZNx)
3y: ZINC ION (ZNy)
3z: ZINC ION (ZNz)
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Label:
No.
Name
Count
Type
Full Name
1
74D
1
Ligand/Ion
1-[(1~{R})-1-[1-[2,2-BIS(FLUORANYL)PROPYL]PIPERIDIN-4-YL]ETHYL]-~{N}-[(4-METHOXY-6-METHYL-2-OXIDANYLIDENE-3~{H}-PYRIDIN-3-YL)METHYL]-2-METHYL-INDOLE-3-CARBOXAMIDE
2
M3L
1
Mod. Amino Acid
N-TRIMETHYLLYSINE
3
ZN
-1
Ligand/Ion
ZINC ION
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Sites
(11, 11)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AG1 (SOFTWARE)
11: AG2 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
CYS A:286 , CYS A:289 , CYS A:294 , HIS A:297
binding site for residue ZN A 801
02
AC2
SOFTWARE
CYS A:320 , CYS A:324 , CYS A:452 , CYS A:463
binding site for residue ZN A 802
03
AC3
SOFTWARE
CYS A:530 , CYS A:543 , CYS A:549 , CYS A:553 , ZN A:804
binding site for residue ZN A 803
04
AC4
SOFTWARE
CYS A:523 , HIS A:525 , CYS A:530 , CYS A:534 , ZN A:803 , ZN A:805
binding site for residue ZN A 804
05
AC5
SOFTWARE
CYS A:523 , CYS A:536 , CYS A:543 , CYS A:547 , ZN A:804
binding site for residue ZN A 805
06
AC6
SOFTWARE
CYS A:560 , CYS A:566 , CYS A:580 , CYS A:588 , CYS A:601 , ZN A:808
binding site for residue ZN A 806
07
AC7
SOFTWARE
CYS A:560 , CYS A:573 , CYS A:580 , CYS A:585
binding site for residue ZN A 807
08
AC8
SOFTWARE
CYS A:560 , CYS A:562 , CYS A:566 , CYS A:571 , ZN A:806
binding site for residue ZN A 808
09
AC9
SOFTWARE
ILE A:109 , TYR A:111 , TRP A:624 , TYR A:658 , CYS A:663 , PHE A:665 , PHE A:686 , ASN A:688 , ARG B:236 , ASP B:237
binding site for residue 74D A 809
10
AG1
SOFTWARE
ASP A:136 , ASP A:140 , PHE B:97 , TYR B:148 , ILE B:363 , TRP B:364 , TYR B:365 , ARG B:414 , GLN Q:3 , GLN Q:5 , PHE Q:8
binding site for Di-peptide ARG Q 6 and M3L Q 7
11
AG2
SOFTWARE
ASP A:136 , PHE B:97 , TYR B:148 , ILE B:363 , TRP B:364 , TYR B:365 , ARG B:414 , ARG Q:6 , ALA Q:9
binding site for Di-peptide M3L Q 7 and PHE Q 8
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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Exons
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SCOP Domains
(0, 0)
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (728 KB)
Header - Asym.Unit
Biol.Unit 1 (189 KB)
Header - Biol.Unit 1
Biol.Unit 2 (189 KB)
Header - Biol.Unit 2
Biol.Unit 3 (190 KB)
Header - Biol.Unit 3
Biol.Unit 4 (188 KB)
Header - Biol.Unit 4
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