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5LS6
Asym. Unit
Info
Asym.Unit (728 KB)
Biol.Unit 1 (189 KB)
Biol.Unit 2 (189 KB)
Biol.Unit 3 (190 KB)
Biol.Unit 4 (188 KB)
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(1)
Title
:
STRUCTURE OF HUMAN POLYCOMB REPRESSIVE COMPLEX 2 (PRC2) WITH INHIBITOR
Authors
:
Y. Zhang, N. Justin, S. Chen, J. Wilson, S. Gamblin
Date
:
22 Aug 16 (Deposition) - 22 Feb 17 (Release) - 22 Feb 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.47
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,Q,R,S,T
Biol. Unit 1: A,B,C,Q (1x)
Biol. Unit 2: D,E,F,R (1x)
Biol. Unit 3: G,H,I,S (1x)
Biol. Unit 4: J,K,L,T (1x)
Keywords
:
Human Prc2, Inhibitor, H3K27, Transferase-Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. G. Vaswani, V. S. Gehling, L. A. Dakin, A. S. Cook, C. G. Nasveschuk, M. Duplessis, P. Iyer, S. Balasubramanian, F. Zhao, A. C. Good, R. Campbell, C. Lee, N. Cantone, R. T. Cummings, E. Normant, S. F. Bellon, B. K. Albrecht, J. C. Harmange, P. Trojer, J. E. Audia, Y. Zhang, N. Justin, S. Chen, J. R. Wilson, S. J. Gamblin
Identification Of (R)-N-((4-Methoxy-6-Methyl-2-Oxo-1, 2-Dihydropyridin-3-Yl) Methyl)-2-Methyl-1-(1-(1-(2, 2, 2-Trifluoroethyl) Piperidin-4-Yl)Ethyl)-1H-Indole-3-Carboxamide (Cpi-1205), A Potent And Selective Inhibitor Of Histone Methyltransferase Ezh2, Suitable For Phase I Clinical Trials For B-Cell Lymphomas.
J. Med. Chem. V. 59 9928 2016
[
close entry info
]
Hetero Components
(3, 40)
Info
All Hetero Components
1a: 1-[(1~{R})-1-[1-[2,2-BIS(FLUORANYL... (74Da)
1b: 1-[(1~{R})-1-[1-[2,2-BIS(FLUORANYL... (74Db)
1c: 1-[(1~{R})-1-[1-[2,2-BIS(FLUORANYL... (74Dc)
1d: 1-[(1~{R})-1-[1-[2,2-BIS(FLUORANYL... (74Dd)
2a: N-TRIMETHYLLYSINE (M3La)
2b: N-TRIMETHYLLYSINE (M3Lb)
2c: N-TRIMETHYLLYSINE (M3Lc)
2d: N-TRIMETHYLLYSINE (M3Ld)
3a: ZINC ION (ZNa)
3aa: ZINC ION (ZNaa)
3ab: ZINC ION (ZNab)
3ac: ZINC ION (ZNac)
3ad: ZINC ION (ZNad)
3ae: ZINC ION (ZNae)
3af: ZINC ION (ZNaf)
3b: ZINC ION (ZNb)
3c: ZINC ION (ZNc)
3d: ZINC ION (ZNd)
3e: ZINC ION (ZNe)
3f: ZINC ION (ZNf)
3g: ZINC ION (ZNg)
3h: ZINC ION (ZNh)
3i: ZINC ION (ZNi)
3j: ZINC ION (ZNj)
3k: ZINC ION (ZNk)
3l: ZINC ION (ZNl)
3m: ZINC ION (ZNm)
3n: ZINC ION (ZNn)
3o: ZINC ION (ZNo)
3p: ZINC ION (ZNp)
3q: ZINC ION (ZNq)
3r: ZINC ION (ZNr)
3s: ZINC ION (ZNs)
3t: ZINC ION (ZNt)
3u: ZINC ION (ZNu)
3v: ZINC ION (ZNv)
3w: ZINC ION (ZNw)
3x: ZINC ION (ZNx)
3y: ZINC ION (ZNy)
3z: ZINC ION (ZNz)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
74D
4
Ligand/Ion
1-[(1~{R})-1-[1-[2,2-BIS(FLUORANYL)PROPYL]PIPERIDIN-4-YL]ETHYL]-~{N}-[(4-METHOXY-6-METHYL-2-OXIDANYLIDENE-3~{H}-PYRIDIN-3-YL)METHYL]-2-METHYL-INDOLE-3-CARBOXAMIDE
2
M3L
4
Mod. Amino Acid
N-TRIMETHYLLYSINE
3
ZN
32
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(44, 44)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
20: AE2 (SOFTWARE)
21: AE3 (SOFTWARE)
22: AE4 (SOFTWARE)
23: AE5 (SOFTWARE)
24: AE6 (SOFTWARE)
25: AE7 (SOFTWARE)
26: AE8 (SOFTWARE)
27: AE9 (SOFTWARE)
28: AF1 (SOFTWARE)
29: AF2 (SOFTWARE)
30: AF3 (SOFTWARE)
31: AF4 (SOFTWARE)
32: AF5 (SOFTWARE)
33: AF6 (SOFTWARE)
34: AF7 (SOFTWARE)
35: AF8 (SOFTWARE)
36: AF9 (SOFTWARE)
37: AG1 (SOFTWARE)
38: AG2 (SOFTWARE)
39: AG3 (SOFTWARE)
40: AG4 (SOFTWARE)
41: AG5 (SOFTWARE)
42: AG6 (SOFTWARE)
43: AG7 (SOFTWARE)
44: AG8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
CYS A:286 , CYS A:289 , CYS A:294 , HIS A:297
binding site for residue ZN A 801
02
AC2
SOFTWARE
CYS A:320 , CYS A:324 , CYS A:452 , CYS A:463
binding site for residue ZN A 802
03
AC3
SOFTWARE
CYS A:530 , CYS A:543 , CYS A:549 , CYS A:553 , ZN A:804
binding site for residue ZN A 803
04
AC4
SOFTWARE
CYS A:523 , HIS A:525 , CYS A:530 , CYS A:534 , ZN A:803 , ZN A:805
binding site for residue ZN A 804
05
AC5
SOFTWARE
CYS A:523 , CYS A:536 , CYS A:543 , CYS A:547 , ZN A:804
binding site for residue ZN A 805
06
AC6
SOFTWARE
CYS A:560 , CYS A:566 , CYS A:580 , CYS A:588 , CYS A:601 , ZN A:808
binding site for residue ZN A 806
07
AC7
SOFTWARE
CYS A:560 , CYS A:573 , CYS A:580 , CYS A:585
binding site for residue ZN A 807
08
AC8
SOFTWARE
CYS A:560 , CYS A:562 , CYS A:566 , CYS A:571 , ZN A:806
binding site for residue ZN A 808
09
AC9
SOFTWARE
ILE A:109 , TYR A:111 , TRP A:624 , TYR A:658 , CYS A:663 , PHE A:665 , PHE A:686 , ASN A:688 , ARG B:236 , ASP B:237
binding site for residue 74D A 809
10
AD1
SOFTWARE
CYS D:286 , CYS D:289 , CYS D:294 , HIS D:297
binding site for residue ZN D 801
11
AD2
SOFTWARE
CYS D:320 , CYS D:324 , CYS D:452 , CYS D:463
binding site for residue ZN D 802
12
AD3
SOFTWARE
CYS D:530 , CYS D:543 , CYS D:549 , CYS D:553 , ZN D:804
binding site for residue ZN D 803
13
AD4
SOFTWARE
CYS D:523 , HIS D:525 , CYS D:530 , CYS D:534 , ZN D:803
binding site for residue ZN D 804
14
AD5
SOFTWARE
CYS D:523 , CYS D:536 , CYS D:543 , CYS D:547
binding site for residue ZN D 805
15
AD6
SOFTWARE
CYS D:560 , CYS D:566 , CYS D:580 , CYS D:588 , CYS D:601 , ZN D:808
binding site for residue ZN D 806
16
AD7
SOFTWARE
CYS D:560 , CYS D:573 , CYS D:580 , CYS D:585
binding site for residue ZN D 807
17
AD8
SOFTWARE
CYS D:560 , CYS D:562 , CYS D:566 , CYS D:571 , ZN D:806
binding site for residue ZN D 808
18
AD9
SOFTWARE
ILE D:109 , MET D:110 , TYR D:111 , GLY D:623 , TRP D:624 , TYR D:658 , TYR D:661 , CYS D:663 , PHE D:665 , ARG D:685 , PHE D:686 , ASN D:688 , ASP E:237
binding site for residue 74D D 809
19
AE1
SOFTWARE
CYS G:286 , CYS G:289 , CYS G:294 , HIS G:297
binding site for residue ZN G 801
20
AE2
SOFTWARE
CYS G:320 , CYS G:324 , TYR G:325 , CYS G:452 , CYS G:463
binding site for residue ZN G 802
21
AE3
SOFTWARE
CYS G:530 , CYS G:543 , CYS G:549 , CYS G:553
binding site for residue ZN G 803
22
AE4
SOFTWARE
CYS G:523 , HIS G:525 , CYS G:530 , CYS G:534
binding site for residue ZN G 804
23
AE5
SOFTWARE
CYS G:523 , CYS G:536 , CYS G:543 , CYS G:547
binding site for residue ZN G 805
24
AE6
SOFTWARE
CYS G:566 , CYS G:580 , CYS G:588 , CYS G:601 , ZN G:808
binding site for residue ZN G 806
25
AE7
SOFTWARE
CYS G:560 , CYS G:573 , CYS G:580 , CYS G:585 , ZN G:808
binding site for residue ZN G 807
26
AE8
SOFTWARE
CYS G:560 , CYS G:562 , CYS G:566 , CYS G:571 , ZN G:806 , ZN G:807
binding site for residue ZN G 808
27
AE9
SOFTWARE
MET G:110 , TYR G:111 , PRO G:132 , TRP G:624 , VAL G:657 , TYR G:661 , CYS G:663 , PHE G:665 , THR G:678 , ARG G:685 , PHE G:686 , ASN G:688
binding site for residue 74D G 809
28
AF1
SOFTWARE
CYS J:286 , CYS J:289 , CYS J:294 , HIS J:297
binding site for residue ZN J 801
29
AF2
SOFTWARE
CYS J:320 , CYS J:324 , CYS J:452 , CYS J:463
binding site for residue ZN J 802
30
AF3
SOFTWARE
CYS J:530 , CYS J:543 , CYS J:549 , CYS J:553
binding site for residue ZN J 803
31
AF4
SOFTWARE
CYS J:523 , HIS J:525 , CYS J:530 , CYS J:534
binding site for residue ZN J 804
32
AF5
SOFTWARE
CYS J:523 , CYS J:536 , CYS J:543 , CYS J:547
binding site for residue ZN J 805
33
AF6
SOFTWARE
CYS J:560 , CYS J:566 , CYS J:580 , CYS J:588 , CYS J:601 , ZN J:808
binding site for residue ZN J 806
34
AF7
SOFTWARE
CYS J:560 , CYS J:573 , CYS J:580 , CYS J:585 , ZN J:808
binding site for residue ZN J 807
35
AF8
SOFTWARE
CYS J:560 , CYS J:562 , CYS J:566 , CYS J:571 , ZN J:806 , ZN J:807
binding site for residue ZN J 808
36
AF9
SOFTWARE
MET J:110 , TYR J:111 , GLY J:623 , TRP J:624 , TYR J:661 , CYS J:663 , PHE J:665 , ARG J:685 , PHE J:686 , ASP K:237
binding site for residue 74D J 809
37
AG1
SOFTWARE
ASP A:136 , ASP A:140 , PHE B:97 , TYR B:148 , ILE B:363 , TRP B:364 , TYR B:365 , ARG B:414 , GLN Q:3 , GLN Q:5 , PHE Q:8
binding site for Di-peptide ARG Q 6 and M3L Q 7
38
AG2
SOFTWARE
ASP A:136 , PHE B:97 , TYR B:148 , ILE B:363 , TRP B:364 , TYR B:365 , ARG B:414 , ARG Q:6 , ALA Q:9
binding site for Di-peptide M3L Q 7 and PHE Q 8
39
AG3
SOFTWARE
ASP D:136 , TYR E:148 , ILE E:363 , TRP E:364 , ARG E:414 , LYS K:408 , GLN R:3 , ALA R:4 , GLN R:5 , PHE R:8 , GLN R:10
binding site for Di-peptide ARG R 6 and M3L R 7
40
AG4
SOFTWARE
ASP D:136 , TYR E:148 , ILE E:363 , TRP E:364 , ARG E:414 , ARG R:6 , ALA R:9
binding site for Di-peptide M3L R 7 and PHE R 8
41
AG5
SOFTWARE
ASP G:136 , PHE H:97 , ILE H:363 , TRP H:364 , TYR H:365 , ARG H:414 , GLN S:3 , ALA S:4 , GLN S:5 , PHE S:8
binding site for Di-peptide ARG S 6 and M3L S 7
42
AG6
SOFTWARE
ASP G:136 , PHE H:97 , ILE H:363 , TRP H:364 , TYR H:365 , ARG H:414 , ASP H:430 , ARG S:6 , ALA S:9
binding site for Di-peptide M3L S 7 and PHE S 8
43
AG7
SOFTWARE
ASP J:136 , ASP J:140 , PHE K:97 , TYR K:148 , ILE K:363 , TRP K:364 , TYR K:365 , ARG K:414 , GLN T:5 , PHE T:8 , ALA T:9
binding site for Di-peptide ARG T 6 and M3L T 7
44
AG8
SOFTWARE
ASP J:136 , PHE K:97 , TYR K:148 , ILE K:363 , TRP K:364 , TYR K:365 , ARG K:414 , ARG T:6 , ALA T:9
binding site for Di-peptide M3L T 7 and PHE T 8
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SAPs(SNPs)/Variants
(0, 0)
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Asym.Unit (728 KB)
Header - Asym.Unit
Biol.Unit 1 (189 KB)
Header - Biol.Unit 1
Biol.Unit 2 (189 KB)
Header - Biol.Unit 2
Biol.Unit 3 (190 KB)
Header - Biol.Unit 3
Biol.Unit 4 (188 KB)
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