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5LNK
Asym. Unit
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Asym.Unit (1.2 MB)
Biol.Unit 1, α-C (1.2 MB)
Biol.Unit 1 (1.2 MB)
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(1)
Title
:
ENTIRE OVINE RESPIRATORY COMPLEX I
Authors
:
K. Fiedorczuk, J. A. Letts, K. Kaszuba, L. A. Sazanov
Date
:
04 Aug 16 (Deposition) - 23 Nov 16 (Release) - 22 Mar 17 (Revision)
Method
:
ELECTRON MICROSCOPY
Resolution
:
3.90
Chains
:
Asym. Unit : A,H,J,K,L,M,N,V,W,X,Y,Z,a,b,c,d,e,f,g,h,i,j,k,l,m,n,o,p,q,r,s,t,u,v,w,x,y,z,1,2,3,4,5,6,9
Biol. Unit 1: A,H,J,K,L,M,N,V,W,X,Y,Z,a,b,c,d,e,f,g,h,i,j,k,l,m,n,o,p,q,r,s,t,u,v,w,x,y,z,1,2,3,4,5,6,9 (1x)
Keywords
:
Nadh:Ubiquinone, Oxidoreductase, Complex I, Mammalian, Mitochondrial
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. Fiedorczuk, J. A. Letts, G. Degliesposti, K. Kaszuba, M. Skehel, L. A. Sazanov
Atomic Structure Of The Entire Mammalian Mitochondrial Complex I.
Nature V. 538 406 2016
[
close entry info
]
Hetero Components
(11, 144)
Info
All Hetero Components
01a: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOETH... (3PEa)
01b: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOETH... (3PEb)
01c: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOETH... (3PEc)
01d: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOETH... (3PEd)
02a: CARDIOLIPIN (CDLa)
02b: CARDIOLIPIN (CDLb)
02c: CARDIOLIPIN (CDLc)
02d: CARDIOLIPIN (CDLd)
03a: FE2/S2 (INORGANIC) CLUSTER (FESa)
03b: FE2/S2 (INORGANIC) CLUSTER (FESb)
04a: FLAVIN MONONUCLEOTIDE (FMNa)
05a: NADPH DIHYDRO-NICOTINAMIDE-ADENINE... (NDPa)
06a: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHO... (PC1a)
06b: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHO... (PC1b)
06c: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHO... (PC1c)
06d: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHO... (PC1d)
07a: 4'-PHOSPHOPANTETHEINE (PNSa)
08a: IRON/SULFUR CLUSTER (SF4a)
08b: IRON/SULFUR CLUSTER (SF4b)
08c: IRON/SULFUR CLUSTER (SF4c)
08d: IRON/SULFUR CLUSTER (SF4d)
08e: IRON/SULFUR CLUSTER (SF4e)
08f: IRON/SULFUR CLUSTER (SF4f)
09a: (UNKa)
09aa: (UNKaa)
09ab: (UNKab)
09ac: (UNKac)
09ad: (UNKad)
09ae: (UNKae)
09af: (UNKaf)
09ag: (UNKag)
09ah: (UNKah)
09ai: (UNKai)
09aj: (UNKaj)
09ak: (UNKak)
09al: (UNKal)
09am: (UNKam)
09an: (UNKan)
09ao: (UNKao)
09ap: (UNKap)
09aq: (UNKaq)
09ar: (UNKar)
09as: (UNKas)
09at: (UNKat)
09au: (UNKau)
09av: (UNKav)
09aw: (UNKaw)
09ax: (UNKax)
09ay: (UNKay)
09az: (UNKaz)
09b: (UNKb)
09ba: (UNKba)
09bb: (UNKbb)
09bc: (UNKbc)
09bd: (UNKbd)
09be: (UNKbe)
09bf: (UNKbf)
09bg: (UNKbg)
09bh: (UNKbh)
09bi: (UNKbi)
09bj: (UNKbj)
09bk: (UNKbk)
09bl: (UNKbl)
09bm: (UNKbm)
09bn: (UNKbn)
09bo: (UNKbo)
09bp: (UNKbp)
09bq: (UNKbq)
09br: (UNKbr)
09bs: (UNKbs)
09bt: (UNKbt)
09bu: (UNKbu)
09bv: (UNKbv)
09bw: (UNKbw)
09bx: (UNKbx)
09by: (UNKby)
09bz: (UNKbz)
09c: (UNKc)
09ca: (UNKca)
09cb: (UNKcb)
09cc: (UNKcc)
09cd: (UNKcd)
09ce: (UNKce)
09cf: (UNKcf)
09cg: (UNKcg)
09ch: (UNKch)
09ci: (UNKci)
09cj: (UNKcj)
09ck: (UNKck)
09cl: (UNKcl)
09cm: (UNKcm)
09cn: (UNKcn)
09co: (UNKco)
09cp: (UNKcp)
09cq: (UNKcq)
09cr: (UNKcr)
09cs: (UNKcs)
09ct: (UNKct)
09cu: (UNKcu)
09cv: (UNKcv)
09cw: (UNKcw)
09cx: (UNKcx)
09cy: (UNKcy)
09cz: (UNKcz)
09d: (UNKd)
09da: (UNKda)
09db: (UNKdb)
09dc: (UNKdc)
09dd: (UNKdd)
09de: (UNKde)
09df: (UNKdf)
09dg: (UNKdg)
09dh: (UNKdh)
09di: (UNKdi)
09dj: (UNKdj)
09dk: (UNKdk)
09dl: (UNKdl)
09dm: (UNKdm)
09dn: (UNKdn)
09do: (UNKdo)
09e: (UNKe)
09f: (UNKf)
09g: (UNKg)
09h: (UNKh)
09i: (UNKi)
09j: (UNKj)
09k: (UNKk)
09l: (UNKl)
09m: (UNKm)
09n: (UNKn)
09o: (UNKo)
09p: (UNKp)
09q: (UNKq)
09r: (UNKr)
09s: (UNKs)
09t: (UNKt)
09u: (UNKu)
09v: (UNKv)
09w: (UNKw)
09x: (UNKx)
09y: (UNKy)
09z: (UNKz)
10a: S-[2-({N-[(2S)-2-HYDROXY-3,3-DIMET... (ZMPa)
11a: ZINC ION (ZNa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
3PE
4
Ligand/Ion
1,2-DIACYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE
2
CDL
4
Ligand/Ion
CARDIOLIPIN
3
FES
2
Ligand/Ion
FE2/S2 (INORGANIC) CLUSTER
4
FMN
1
Ligand/Ion
FLAVIN MONONUCLEOTIDE
5
NDP
1
Ligand/Ion
NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDEPHOSPHATE
6
PC1
4
Ligand/Ion
1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
7
PNS
1
Ligand/Ion
4'-PHOSPHOPANTETHEINE
8
SF4
6
Ligand/Ion
IRON/SULFUR CLUSTER
9
UNK
119
Mod. Amino Acid
10
ZMP
1
Ligand/Ion
S-[2-({N-[(2S)-2-HYDROXY-3,3-DIMETHYL-4-(PHOSPHONOOXY)BUTANOYL]-BETA-ALANYL}AMINO)ETHYL] TETRADECANETHIOATE
11
ZN
1
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(25, 25)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
20: AE2 (SOFTWARE)
21: AE3 (SOFTWARE)
22: AE4 (SOFTWARE)
23: AE5 (SOFTWARE)
24: AE6 (SOFTWARE)
25: AE7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
PRO 1:203 , SER 1:358 , CYS 1:359 , GLN 1:361 , CYS 1:362 , CYS 1:365 , THR 1:403 , ILE 1:404 , CYS 1:405
binding site for residue SF4 1 500
02
AC2
SOFTWARE
GLY 1:67 , ARG 1:68 , ALA 1:71 , LYS 1:78 , ASN 1:96 , ASP 1:98 , GLU 1:99 , GLY 1:100 , TYR 1:184 , GLY 1:187 , GLU 1:188 , GLU 1:189 , VAL 1:222 , ALA 1:223 , ASN 1:224 , THR 1:227 , ALA 1:406
binding site for residue FMN 1 501
03
AC3
SOFTWARE
PRO 1:102 , GLY 1:103 , CYS 2:103 , PRO 2:107 , CYS 2:108 , CYS 2:144 , LEU 2:145 , GLY 2:146 , ALA 2:147 , CYS 2:148 , MET 2:153
binding site for residue FES 2 300
04
AC4
SOFTWARE
HIS 3:101 , ASP 3:104 , CYS 3:105 , CYS 3:108 , CYS 3:114 , GLN 3:117 , ARG 3:152 , VAL 3:205 , GLY 3:206 , MET 4:342
binding site for residue SF4 3 801
05
AC5
SOFTWARE
CYS 3:153 , ILE 3:154 , GLN 3:155 , CYS 3:156 , THR 3:157 , CYS 3:159 , CYS 3:203 , PRO 3:204 , VAL 3:205
binding site for residue SF4 3 802
06
AC6
SOFTWARE
CYS 3:41 , TYR 3:42 , ALA 3:49 , GLY 3:50 , CYS 3:52 , ARG 3:53 , CYS 3:55 , CYS 3:69
binding site for residue FES 3 803
07
AC7
SOFTWARE
ARG 4:105 , HIS 4:190 , CYS 6:54 , CYS 6:55 , GLY 6:90 , SER 6:118 , CYS 6:119 , CYS 6:149 , PRO 6:150
binding site for residue SF4 6 300
08
AC8
SOFTWARE
ARG 4:233 , ASN 4:237 , THR 9:24 , LEU 9:25 , TRP 9:27 , LEU 9:30 , ILE 9:31 , PRO H:180 , PHE H:186 , ILE H:187 , ASN H:292 , LEU H:296 , VAL m:17 , ILE q:39
binding site for residue 3PE 9 501
09
AC9
SOFTWARE
HIS 9:65 , CYS 9:87 , PRO 9:88 , ILE 9:92 , CYS 9:116 , ILE 9:117 , TYR 9:118 , CYS 9:119 , GLY 9:120 , CYS 9:122
binding site for residue SF4 9 502
10
AD1
SOFTWARE
CYS 9:77 , ILE 9:78 , ALA 9:79 , CYS 9:80 , LYS 9:81 , CYS 9:83 , CYS 9:126 , ALA 9:130
binding site for residue SF4 9 503
11
AD2
SOFTWARE
SER N:125 , LEU N:128 , THR N:132 , ILE N:206 , SER N:213 , MET N:220 , THR N:324 , MET N:329 , PRO k:5 , PC1 o:201 , 3PE o:203
binding site for residue PC1 N 401
12
AD3
SOFTWARE
PHE A:96 , ALA A:99 , ALA A:103 , TYR A:104 , GLN A:108 , TRP J:159 , ILE N:4 , PHE m:22
binding site for residue PC1 A 200
13
AD4
SOFTWARE
LEU M:2 , THR M:55 , LEU M:101 , PHE M:105 , MET M:121 , PRO N:256 , MET N:335 , PRO N:338 , THR Y:170
binding site for residue PC1 M 501
14
AD5
SOFTWARE
ASN L:23 , TRP L:66 , CDL L:601 , LEU M:446 , LEU M:449 , ASN M:450 , LEU W:30 , VAL W:37 , HIS W:69 , SER w:74 , VAL w:77 , ALA w:78
binding site for residue CDL M 502
15
AD6
SOFTWARE
LEU L:15 , ILE L:22 , GLN L:116 , LYS L:119 , TYR L:120 , LEU L:123 , THR L:127 , MET L:150 , ALA M:357 , LEU M:360 , LEU M:369 , PRO M:371 , LEU M:445 , CDL M:502 , LEU W:22
binding site for residue CDL L 601
16
AD7
SOFTWARE
THR A:89 , MET A:90 , THR J:151 , TRP J:152 , TRP J:159 , LEU N:15 , ILE N:18 , VAL l:11 , LEU l:13 , PC1 o:201
binding site for residue CDL J 300
17
AD8
SOFTWARE
LEU A:3 , LEU A:7 , LEU H:81 , MET H:98 , ASN H:99 , PHE H:104 , ILE J:34 , VAL J:35 , GLY J:38 , GLY J:42 , LEU J:45 , SER J:50 , LEU J:54 , PHE J:57 , PHE q:139
binding site for residue 3PE J 301
18
AD9
SOFTWARE
CYS b:59 , HIS b:68 , CYS b:84 , CYS b:87
binding site for residue ZN b 300
19
AE1
SOFTWARE
ARG 6:178 , GLY d:25 , THR d:27 , GLY d:28 , PHE d:29 , LEU d:30 , ARG d:50 , GLU d:52 , VAL d:95 , GLY d:96 , ARG d:97 , GLU d:98 , PHE d:104 , ILE d:132 , HIS d:134 , ALA d:169 , ILE d:171
binding site for residue NDP d 401
20
AE2
SOFTWARE
TYR H:43 , SER h:2 , ALA h:3 , THR h:4 , ILE h:7 , LEU i:3 , VAL i:6 , LEU i:7 , ARG i:9 , GLN i:13 , TYR i:23 , PHE z:3 , LEU z:6
binding site for residue CDL i 201
21
AE3
SOFTWARE
LYS g:28 , VAL g:31 , LEU g:34 , TRP g:38 , MET g:65 , PHE g:66 , ASN g:69 , ALA g:70 , VAL g:78 , PHE g:105 , ASP j:43 , SER j:44
binding site for residue ZMP j 101
22
AE4
SOFTWARE
CDL J:300 , ILE N:18 , MET N:21 , LEU N:346 , PC1 N:401 , PRO l:1 , PHE l:2 , PHE l:3 , LEU o:11 , GLN o:12 , PHE o:13 , ARG o:78
binding site for residue PC1 o 201
23
AE5
SOFTWARE
MET M:9 , MET M:10 , TRP M:16 , LEU M:17 , ALA M:90 , ILE N:239 , PHE o:36 , TYR o:39 , LEU o:43 , VAL o:53 , LEU o:54
binding site for residue 3PE o 202
24
AE6
SOFTWARE
THR N:324 , LEU N:325 , LEU N:332 , PC1 N:401 , ARG o:60 , LEU o:63 , TYR o:64 , PHE o:68
binding site for residue 3PE o 203
25
AE7
SOFTWARE
ASP X:43 , SER X:44 , LEU X:45 , GLN t:12 , VAL t:15 , HIS t:50 , LYS t:51 , ALA t:59 , LEU t:63
binding site for residue PNS X 401
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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(0, 0)
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Exons
(0, 0)
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CATH Domains
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Pfam Domains
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