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5LMU
Asym. Unit
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Asym.Unit (944 KB)
Biol.Unit 1 (934 KB)
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Title
:
STRUCTURE OF BACTERIAL 30S-IF3-MRNA-TRNA TRANSLATION PRE-INITIATION COMPLEX, CLOSED FORM (STATE-4)
Authors
:
T. Hussain, J. L. Llacer, B. T. Wimberly, V. Ramakrishnan
Date
:
01 Aug 16 (Deposition) - 05 Oct 16 (Release) - 05 Oct 16 (Revision)
Method
:
ELECTRON MICROSCOPY
Resolution
:
4.00
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,V,X,Y,Z
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,V,X,Y,Z (1x)
Keywords
:
Ribosome, Translation, Initiation Factors, 30S, If1, If3, Trnai, Pic, Thermus Thermophilus
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. Hussain, J. L. Llacer, B. T. Wimberly, J. S. Kieft, V. Ramakrishnan
Large-Scale Movements Of If3 And Trna During Bacterial Translation Initiation.
Cell V. 167 133 2016
[
close entry info
]
Hetero Components
(7, 87)
Info
All Hetero Components
1a: 4-THIOURIDINE-5'-MONOPHOSPHATE (4SUa)
2a: 5-METHYLURIDINE 5'-MONOPHOSPHATE (5MUa)
3a: N7-METHYL-GUANOSINE-5'-MONOPHOSPHA... (G7Ma)
4a: MAGNESIUM ION (MGa)
4aa: MAGNESIUM ION (MGaa)
4ab: MAGNESIUM ION (MGab)
4ac: MAGNESIUM ION (MGac)
4ad: MAGNESIUM ION (MGad)
4ae: MAGNESIUM ION (MGae)
4af: MAGNESIUM ION (MGaf)
4ag: MAGNESIUM ION (MGag)
4ah: MAGNESIUM ION (MGah)
4ai: MAGNESIUM ION (MGai)
4aj: MAGNESIUM ION (MGaj)
4ak: MAGNESIUM ION (MGak)
4al: MAGNESIUM ION (MGal)
4am: MAGNESIUM ION (MGam)
4an: MAGNESIUM ION (MGan)
4ao: MAGNESIUM ION (MGao)
4ap: MAGNESIUM ION (MGap)
4aq: MAGNESIUM ION (MGaq)
4ar: MAGNESIUM ION (MGar)
4as: MAGNESIUM ION (MGas)
4at: MAGNESIUM ION (MGat)
4au: MAGNESIUM ION (MGau)
4av: MAGNESIUM ION (MGav)
4aw: MAGNESIUM ION (MGaw)
4ax: MAGNESIUM ION (MGax)
4ay: MAGNESIUM ION (MGay)
4az: MAGNESIUM ION (MGaz)
4b: MAGNESIUM ION (MGb)
4ba: MAGNESIUM ION (MGba)
4bb: MAGNESIUM ION (MGbb)
4bc: MAGNESIUM ION (MGbc)
4bd: MAGNESIUM ION (MGbd)
4be: MAGNESIUM ION (MGbe)
4bf: MAGNESIUM ION (MGbf)
4bg: MAGNESIUM ION (MGbg)
4bh: MAGNESIUM ION (MGbh)
4bi: MAGNESIUM ION (MGbi)
4bj: MAGNESIUM ION (MGbj)
4bk: MAGNESIUM ION (MGbk)
4bl: MAGNESIUM ION (MGbl)
4bm: MAGNESIUM ION (MGbm)
4bn: MAGNESIUM ION (MGbn)
4bo: MAGNESIUM ION (MGbo)
4bp: MAGNESIUM ION (MGbp)
4bq: MAGNESIUM ION (MGbq)
4br: MAGNESIUM ION (MGbr)
4bs: MAGNESIUM ION (MGbs)
4bt: MAGNESIUM ION (MGbt)
4bu: MAGNESIUM ION (MGbu)
4bv: MAGNESIUM ION (MGbv)
4bw: MAGNESIUM ION (MGbw)
4bx: MAGNESIUM ION (MGbx)
4by: MAGNESIUM ION (MGby)
4bz: MAGNESIUM ION (MGbz)
4c: MAGNESIUM ION (MGc)
4ca: MAGNESIUM ION (MGca)
4cb: MAGNESIUM ION (MGcb)
4d: MAGNESIUM ION (MGd)
4e: MAGNESIUM ION (MGe)
4f: MAGNESIUM ION (MGf)
4g: MAGNESIUM ION (MGg)
4h: MAGNESIUM ION (MGh)
4i: MAGNESIUM ION (MGi)
4j: MAGNESIUM ION (MGj)
4k: MAGNESIUM ION (MGk)
4l: MAGNESIUM ION (MGl)
4m: MAGNESIUM ION (MGm)
4n: MAGNESIUM ION (MGn)
4o: MAGNESIUM ION (MGo)
4p: MAGNESIUM ION (MGp)
4q: MAGNESIUM ION (MGq)
4r: MAGNESIUM ION (MGr)
4s: MAGNESIUM ION (MGs)
4t: MAGNESIUM ION (MGt)
4u: MAGNESIUM ION (MGu)
4v: MAGNESIUM ION (MGv)
4w: MAGNESIUM ION (MGw)
4x: MAGNESIUM ION (MGx)
4y: MAGNESIUM ION (MGy)
4z: MAGNESIUM ION (MGz)
5a: O2'-METHYLYCYTIDINE-5'-MONOPHOSPHA... (OMCa)
6a: PSEUDOURIDINE-5'-MONOPHOSPHATE (PSUa)
7a: ZINC ION (ZNa)
7b: ZINC ION (ZNb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
4SU
1
Mod. Nucleotide
4-THIOURIDINE-5'-MONOPHOSPHATE
2
5MU
1
Mod. Nucleotide
5-METHYLURIDINE 5'-MONOPHOSPHATE
3
G7M
1
Mod. Nucleotide
N7-METHYL-GUANOSINE-5'-MONOPHOSPHATE
4
MG
80
Ligand/Ion
MAGNESIUM ION
5
OMC
1
Mod. Nucleotide
O2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE
6
PSU
1
Mod. Nucleotide
PSEUDOURIDINE-5'-MONOPHOSPHATE
7
ZN
2
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(70, 70)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
20: AE2 (SOFTWARE)
21: AE3 (SOFTWARE)
22: AE4 (SOFTWARE)
23: AE5 (SOFTWARE)
24: AE6 (SOFTWARE)
25: AE7 (SOFTWARE)
26: AE8 (SOFTWARE)
27: AE9 (SOFTWARE)
28: AF1 (SOFTWARE)
29: AF2 (SOFTWARE)
30: AF3 (SOFTWARE)
31: AF4 (SOFTWARE)
32: AF5 (SOFTWARE)
33: AF6 (SOFTWARE)
34: AF7 (SOFTWARE)
35: AF8 (SOFTWARE)
36: AF9 (SOFTWARE)
37: AG1 (SOFTWARE)
38: AG2 (SOFTWARE)
39: AG3 (SOFTWARE)
40: AG4 (SOFTWARE)
41: AG5 (SOFTWARE)
42: AG6 (SOFTWARE)
43: AG7 (SOFTWARE)
44: AG8 (SOFTWARE)
45: AG9 (SOFTWARE)
46: AH1 (SOFTWARE)
47: AH2 (SOFTWARE)
48: AH3 (SOFTWARE)
49: AH4 (SOFTWARE)
50: AH5 (SOFTWARE)
51: AH6 (SOFTWARE)
52: AH7 (SOFTWARE)
53: AH8 (SOFTWARE)
54: AH9 (SOFTWARE)
55: AI1 (SOFTWARE)
56: AI2 (SOFTWARE)
57: AI3 (SOFTWARE)
58: AI4 (SOFTWARE)
59: AI5 (SOFTWARE)
60: AI6 (SOFTWARE)
61: AI7 (SOFTWARE)
62: AI8 (SOFTWARE)
63: AI9 (SOFTWARE)
64: AJ1 (SOFTWARE)
65: AJ2 (SOFTWARE)
66: AJ3 (SOFTWARE)
67: AJ4 (SOFTWARE)
68: AJ5 (SOFTWARE)
69: AJ6 (SOFTWARE)
70: AJ7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
G A:251 , U A:252 , G A:266 , C A:267 , C A:268 , LYS Q:67
binding site for residue MG A 1601
02
AC2
SOFTWARE
A A:315
binding site for residue MG A 1602
03
AC3
SOFTWARE
G A:148 , A A:172
binding site for residue MG A 1603
04
AC4
SOFTWARE
A A:792 , U A:793
binding site for residue MG A 1604
05
AC5
SOFTWARE
A A:787 , U A:788
binding site for residue MG A 1605
06
AC6
SOFTWARE
A A:1500 , G A:1504 , G A:1505 , A A:1507 , G A:1508
binding site for residue MG A 1607
07
AC7
SOFTWARE
C A:121 , G A:124 , U A:125 , G A:126 , G A:236
binding site for residue MG A 1608
08
AC8
SOFTWARE
A A:195
binding site for residue MG A 1609
09
AC9
SOFTWARE
C A:748 , C A:749 , G A:750
binding site for residue MG A 1610
10
AD1
SOFTWARE
C A:48 , U A:114 , G A:115
binding site for residue MG A 1612
11
AD2
SOFTWARE
C A:504 , G A:505
binding site for residue MG A 1613
12
AD3
SOFTWARE
A A:563 , U A:565 , G A:566 , G A:567
binding site for residue MG A 1614
13
AD4
SOFTWARE
U A:287
binding site for residue MG A 1615
14
AD5
SOFTWARE
G A:579
binding site for residue MG A 1616
15
AD6
SOFTWARE
C A:291
binding site for residue MG A 1618
16
AD7
SOFTWARE
C A:58 , A A:59 , C A:386 , U A:387
binding site for residue MG A 1619
17
AD8
SOFTWARE
U A:772
binding site for residue MG A 1620
18
AD9
SOFTWARE
A A:572 , A A:573 , A A:574
binding site for residue MG A 1621
19
AE1
SOFTWARE
G A:853 , G A:854
binding site for residue MG A 1622
20
AE2
SOFTWARE
A A:609
binding site for residue MG A 1623
21
AE3
SOFTWARE
G A:581 , G A:758
binding site for residue MG A 1624
22
AE4
SOFTWARE
G A:576
binding site for residue MG A 1625
23
AE5
SOFTWARE
C A:355
binding site for residue MG A 1626
24
AE6
SOFTWARE
G A:903
binding site for residue MG A 1627
25
AE7
SOFTWARE
A A:768 , U A:804
binding site for residue MG A 1628
26
AE8
SOFTWARE
G A:765 , A A:766 , C A:812
binding site for residue MG A 1629
27
AE9
SOFTWARE
U A:13 , A A:915 , G A:916
binding site for residue MG A 1630
28
AF1
SOFTWARE
A A:782 , A A:794
binding site for residue MG A 1631
29
AF2
SOFTWARE
A A:559 , U A:560
binding site for residue MG A 1632
30
AF3
SOFTWARE
G A:445 , G A:446
binding site for residue MG A 1633
31
AF4
SOFTWARE
G A:595 , C A:596 , G A:597 , U A:598
binding site for residue MG A 1634
32
AF5
SOFTWARE
U A:804
binding site for residue MG A 1636
33
AF6
SOFTWARE
A A:572
binding site for residue MG A 1638
34
AF7
SOFTWARE
A A:59 , G A:331 , G A:351 , C A:352
binding site for residue MG A 1639
35
AF8
SOFTWARE
G A:362
binding site for residue MG A 1640
36
AF9
SOFTWARE
G A:21
binding site for residue MG A 1641
37
AG1
SOFTWARE
C A:398
binding site for residue MG A 1642
38
AG2
SOFTWARE
U A:323 , G A:324
binding site for residue MG A 1643
39
AG3
SOFTWARE
U A:437
binding site for residue MG A 1644
40
AG4
SOFTWARE
A A:109 , A A:329 , G A:331
binding site for residue MG A 1645
41
AG5
SOFTWARE
G A:660 , G A:661
binding site for residue MG A 1648
42
AG6
SOFTWARE
G A:506 , C A:507 , C A:508 , A A:509 , A A:510
binding site for residue MG A 1649
43
AG7
SOFTWARE
G A:333
binding site for residue MG A 1650
44
AG8
SOFTWARE
G A:858 , C A:868 , G A:869
binding site for residue MG A 1651
45
AG9
SOFTWARE
G A:727
binding site for residue MG A 1652
46
AH1
SOFTWARE
C A:569 , G A:570
binding site for residue MG A 1653
47
AH2
SOFTWARE
G A:316
binding site for residue MG A 1654
48
AH3
SOFTWARE
A A:53 , A A:353
binding site for residue MG A 1655
49
AH4
SOFTWARE
A A:383
binding site for residue MG A 1656
50
AH5
SOFTWARE
A A:116 , G A:117 , G A:289
binding site for residue MG A 1657
51
AH6
SOFTWARE
G A:588
binding site for residue MG A 1658
52
AH7
SOFTWARE
A A:547 , G A:548
binding site for residue MG A 1659
53
AH8
SOFTWARE
G A:396
binding site for residue MG A 1660
54
AH9
SOFTWARE
A A:918
binding site for residue MG A 1662
55
AI1
SOFTWARE
A A:684 , A A:704
binding site for residue MG A 1664
56
AI2
SOFTWARE
A A:608
binding site for residue MG A 1665
57
AI3
SOFTWARE
U A:1498 , A A:1499 , A A:1500 , G A:1504 , G A:1505
binding site for residue MG A 1666
58
AI4
SOFTWARE
A A:937 , A A:938 , G A:939
binding site for residue MG A 1667
59
AI5
SOFTWARE
G A:577 , C A:578 , U A:820
binding site for residue MG A 1668
60
AI6
SOFTWARE
A A:780 , G A:800
binding site for residue MG A 1669
61
AI7
SOFTWARE
A A:583 , G A:585
binding site for residue MG A 1670
62
AI8
SOFTWARE
U A:45
binding site for residue MG A 1671
63
AI9
SOFTWARE
G A:299 , G A:558
binding site for residue MG A 1672
64
AJ1
SOFTWARE
G A:581 , A A:759
binding site for residue MG A 1674
65
AJ2
SOFTWARE
G A:266
binding site for residue MG A 1675
66
AJ3
SOFTWARE
G A:517 , C A:519
binding site for residue MG A 1678
67
AJ4
SOFTWARE
CYS D:9 , CYS D:12 , CYS D:26 , CYS D:31
binding site for residue ZN D 300
68
AJ5
SOFTWARE
SER L:116
binding site for residue MG L 201
69
AJ6
SOFTWARE
CYS N:24 , CYS N:27 , CYS N:40 , CYS N:43
binding site for residue ZN N 101
70
AJ7
SOFTWARE
G Z:18 , G Z:53 , C Z:56 , A Z:57 , A Z:58 , C Z:61
binding site for residues 5MU Z 54 and PSU Z 55
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(0, 0)
Info
All Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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all CATH domains
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Pfam Domains
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all PFAM domains
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Chain J
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