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5LMP
Asym. Unit
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Asym.Unit (927 KB)
Biol.Unit 1 (916 KB)
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(1)
Title
:
STRUCTURE OF BACTERIAL 30S-IF1-IF3-MRNA TRANSLATION PRE-INITIATION COMPLEX (STATE-1C)
Authors
:
T. Hussain, J. L. Llacer, B. T. Wimberly, V. Ramakrishnan
Date
:
01 Aug 16 (Deposition) - 05 Oct 16 (Release) - 05 Oct 16 (Revision)
Method
:
ELECTRON MICROSCOPY
Resolution
:
5.35
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,V,W,X,Y
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,V,W,X,Y (1x)
Keywords
:
Ribosome, Translation, Initiation Factors, 30S, If1, If3, Pic, Thermus Thermophilus
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. Hussain, J. L. Llacer, B. T. Wimberly, J. S. Kieft, V. Ramakrishnan
Large-Scale Movements Of If3 And Trna During Bacterial Translation Initiation.
Cell V. 167 133 2016
[
close entry info
]
Hetero Components
(2, 110)
Info
All Hetero Components
1a: MAGNESIUM ION (MGa)
1aa: MAGNESIUM ION (MGaa)
1ab: MAGNESIUM ION (MGab)
1ac: MAGNESIUM ION (MGac)
1ad: MAGNESIUM ION (MGad)
1ae: MAGNESIUM ION (MGae)
1af: MAGNESIUM ION (MGaf)
1ag: MAGNESIUM ION (MGag)
1ah: MAGNESIUM ION (MGah)
1ai: MAGNESIUM ION (MGai)
1aj: MAGNESIUM ION (MGaj)
1ak: MAGNESIUM ION (MGak)
1al: MAGNESIUM ION (MGal)
1am: MAGNESIUM ION (MGam)
1an: MAGNESIUM ION (MGan)
1ao: MAGNESIUM ION (MGao)
1ap: MAGNESIUM ION (MGap)
1aq: MAGNESIUM ION (MGaq)
1ar: MAGNESIUM ION (MGar)
1as: MAGNESIUM ION (MGas)
1at: MAGNESIUM ION (MGat)
1au: MAGNESIUM ION (MGau)
1av: MAGNESIUM ION (MGav)
1aw: MAGNESIUM ION (MGaw)
1ax: MAGNESIUM ION (MGax)
1ay: MAGNESIUM ION (MGay)
1az: MAGNESIUM ION (MGaz)
1b: MAGNESIUM ION (MGb)
1ba: MAGNESIUM ION (MGba)
1bb: MAGNESIUM ION (MGbb)
1bc: MAGNESIUM ION (MGbc)
1bd: MAGNESIUM ION (MGbd)
1be: MAGNESIUM ION (MGbe)
1bf: MAGNESIUM ION (MGbf)
1bg: MAGNESIUM ION (MGbg)
1bh: MAGNESIUM ION (MGbh)
1bi: MAGNESIUM ION (MGbi)
1bj: MAGNESIUM ION (MGbj)
1bk: MAGNESIUM ION (MGbk)
1bl: MAGNESIUM ION (MGbl)
1bm: MAGNESIUM ION (MGbm)
1bn: MAGNESIUM ION (MGbn)
1bo: MAGNESIUM ION (MGbo)
1bp: MAGNESIUM ION (MGbp)
1bq: MAGNESIUM ION (MGbq)
1br: MAGNESIUM ION (MGbr)
1bs: MAGNESIUM ION (MGbs)
1bt: MAGNESIUM ION (MGbt)
1bu: MAGNESIUM ION (MGbu)
1bv: MAGNESIUM ION (MGbv)
1bw: MAGNESIUM ION (MGbw)
1bx: MAGNESIUM ION (MGbx)
1by: MAGNESIUM ION (MGby)
1bz: MAGNESIUM ION (MGbz)
1c: MAGNESIUM ION (MGc)
1ca: MAGNESIUM ION (MGca)
1cb: MAGNESIUM ION (MGcb)
1cc: MAGNESIUM ION (MGcc)
1cd: MAGNESIUM ION (MGcd)
1ce: MAGNESIUM ION (MGce)
1cf: MAGNESIUM ION (MGcf)
1cg: MAGNESIUM ION (MGcg)
1ch: MAGNESIUM ION (MGch)
1ci: MAGNESIUM ION (MGci)
1cj: MAGNESIUM ION (MGcj)
1ck: MAGNESIUM ION (MGck)
1cl: MAGNESIUM ION (MGcl)
1cm: MAGNESIUM ION (MGcm)
1cn: MAGNESIUM ION (MGcn)
1co: MAGNESIUM ION (MGco)
1cp: MAGNESIUM ION (MGcp)
1cq: MAGNESIUM ION (MGcq)
1cr: MAGNESIUM ION (MGcr)
1cs: MAGNESIUM ION (MGcs)
1ct: MAGNESIUM ION (MGct)
1cu: MAGNESIUM ION (MGcu)
1cv: MAGNESIUM ION (MGcv)
1cw: MAGNESIUM ION (MGcw)
1cx: MAGNESIUM ION (MGcx)
1cy: MAGNESIUM ION (MGcy)
1cz: MAGNESIUM ION (MGcz)
1d: MAGNESIUM ION (MGd)
1da: MAGNESIUM ION (MGda)
1db: MAGNESIUM ION (MGdb)
1dc: MAGNESIUM ION (MGdc)
1dd: MAGNESIUM ION (MGdd)
1e: MAGNESIUM ION (MGe)
1f: MAGNESIUM ION (MGf)
1g: MAGNESIUM ION (MGg)
1h: MAGNESIUM ION (MGh)
1i: MAGNESIUM ION (MGi)
1j: MAGNESIUM ION (MGj)
1k: MAGNESIUM ION (MGk)
1l: MAGNESIUM ION (MGl)
1m: MAGNESIUM ION (MGm)
1n: MAGNESIUM ION (MGn)
1o: MAGNESIUM ION (MGo)
1p: MAGNESIUM ION (MGp)
1q: MAGNESIUM ION (MGq)
1r: MAGNESIUM ION (MGr)
1s: MAGNESIUM ION (MGs)
1t: MAGNESIUM ION (MGt)
1u: MAGNESIUM ION (MGu)
1v: MAGNESIUM ION (MGv)
1w: MAGNESIUM ION (MGw)
1x: MAGNESIUM ION (MGx)
1y: MAGNESIUM ION (MGy)
1z: MAGNESIUM ION (MGz)
2a: ZINC ION (ZNa)
2b: ZINC ION (ZNb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
MG
108
Ligand/Ion
MAGNESIUM ION
2
ZN
2
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(96, 96)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
20: AE2 (SOFTWARE)
21: AE3 (SOFTWARE)
22: AE4 (SOFTWARE)
23: AE5 (SOFTWARE)
24: AE6 (SOFTWARE)
25: AE7 (SOFTWARE)
26: AE8 (SOFTWARE)
27: AE9 (SOFTWARE)
28: AF1 (SOFTWARE)
29: AF2 (SOFTWARE)
30: AF3 (SOFTWARE)
31: AF4 (SOFTWARE)
32: AF5 (SOFTWARE)
33: AF6 (SOFTWARE)
34: AF7 (SOFTWARE)
35: AF8 (SOFTWARE)
36: AF9 (SOFTWARE)
37: AG1 (SOFTWARE)
38: AG2 (SOFTWARE)
39: AG3 (SOFTWARE)
40: AG4 (SOFTWARE)
41: AG5 (SOFTWARE)
42: AG6 (SOFTWARE)
43: AG7 (SOFTWARE)
44: AG8 (SOFTWARE)
45: AG9 (SOFTWARE)
46: AH1 (SOFTWARE)
47: AH2 (SOFTWARE)
48: AH3 (SOFTWARE)
49: AH4 (SOFTWARE)
50: AH5 (SOFTWARE)
51: AH6 (SOFTWARE)
52: AH7 (SOFTWARE)
53: AH8 (SOFTWARE)
54: AH9 (SOFTWARE)
55: AI1 (SOFTWARE)
56: AI2 (SOFTWARE)
57: AI3 (SOFTWARE)
58: AI4 (SOFTWARE)
59: AI5 (SOFTWARE)
60: AI6 (SOFTWARE)
61: AI7 (SOFTWARE)
62: AI8 (SOFTWARE)
63: AI9 (SOFTWARE)
64: AJ1 (SOFTWARE)
65: AJ2 (SOFTWARE)
66: AJ3 (SOFTWARE)
67: AJ4 (SOFTWARE)
68: AJ5 (SOFTWARE)
69: AJ6 (SOFTWARE)
70: AJ7 (SOFTWARE)
71: AJ8 (SOFTWARE)
72: AJ9 (SOFTWARE)
73: AK1 (SOFTWARE)
74: AK2 (SOFTWARE)
75: AK3 (SOFTWARE)
76: AK4 (SOFTWARE)
77: AK5 (SOFTWARE)
78: AK6 (SOFTWARE)
79: AK7 (SOFTWARE)
80: AK8 (SOFTWARE)
81: AK9 (SOFTWARE)
82: AL1 (SOFTWARE)
83: AL2 (SOFTWARE)
84: AL3 (SOFTWARE)
85: AL4 (SOFTWARE)
86: AL5 (SOFTWARE)
87: AL6 (SOFTWARE)
88: AL7 (SOFTWARE)
89: AL8 (SOFTWARE)
90: AL9 (SOFTWARE)
91: AM1 (SOFTWARE)
92: AM2 (SOFTWARE)
93: AM3 (SOFTWARE)
94: AM4 (SOFTWARE)
95: AM5 (SOFTWARE)
96: AM6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
G A:1392 , A A:1502 , A A:1503 , G A:1530
binding site for residue MG A 1601
02
AC2
SOFTWARE
G A:251 , U A:252 , G A:266 , C A:267 , LYS Q:67
binding site for residue MG A 1602
03
AC3
SOFTWARE
A A:315
binding site for residue MG A 1603
04
AC4
SOFTWARE
G A:148 , A A:172
binding site for residue MG A 1604
05
AC5
SOFTWARE
U A:1510 , G A:1511 , U A:1512 , U A:1522
binding site for residue MG A 1605
06
AC6
SOFTWARE
U A:12 , U A:13 , U A:14 , C A:526 , G A:527 , A A:914
binding site for residue MG A 1606
07
AC7
SOFTWARE
G A:107 , G A:324 , A A:325
binding site for residue MG A 1607
08
AC8
SOFTWARE
U A:793
binding site for residue MG A 1608
09
AC9
SOFTWARE
A A:787 , U A:788
binding site for residue MG A 1609
10
AD1
SOFTWARE
A A:1500 , G A:1504 , G A:1505 , A A:1507 , G A:1508
binding site for residue MG A 1611
11
AD2
SOFTWARE
C A:121 , G A:124 , U A:125 , G A:126 , G A:236
binding site for residue MG A 1612
12
AD3
SOFTWARE
U A:180 , G A:181 , C A:194 , A A:195
binding site for residue MG A 1613
13
AD4
SOFTWARE
C A:748 , C A:749 , G A:750
binding site for residue MG A 1614
14
AD5
SOFTWARE
G A:309
binding site for residue MG A 1615
15
AD6
SOFTWARE
G A:371 , C A:372
binding site for residue MG A 1616
16
AD7
SOFTWARE
C A:48 , U A:114 , G A:115
binding site for residue MG A 1617
17
AD8
SOFTWARE
C A:504 , G A:505
binding site for residue MG A 1618
18
AD9
SOFTWARE
A A:563 , C A:564 , U A:565 , G A:566 , G A:567
binding site for residue MG A 1619
19
AE1
SOFTWARE
U A:287
binding site for residue MG A 1620
20
AE2
SOFTWARE
G A:579 , G A:758
binding site for residue MG A 1621
21
AE3
SOFTWARE
C A:290 , C A:291
binding site for residue MG A 1623
22
AE4
SOFTWARE
C A:58 , A A:59 , C A:386 , U A:387
binding site for residue MG A 1624
23
AE5
SOFTWARE
A A:816
binding site for residue MG A 1625
24
AE6
SOFTWARE
A A:572 , A A:573 , A A:574
binding site for residue MG A 1627
25
AE7
SOFTWARE
G A:854
binding site for residue MG A 1628
26
AE8
SOFTWARE
A A:431
binding site for residue MG A 1629
27
AE9
SOFTWARE
A A:609 , G A:610
binding site for residue MG A 1630
28
AF1
SOFTWARE
G A:581 , G A:758
binding site for residue MG A 1631
29
AF2
SOFTWARE
G A:576
binding site for residue MG A 1632
30
AF3
SOFTWARE
C A:355 , G A:357
binding site for residue MG A 1633
31
AF4
SOFTWARE
G A:903 , U A:1512
binding site for residue MG A 1634
32
AF5
SOFTWARE
A A:768
binding site for residue MG A 1635
33
AF6
SOFTWARE
A A:766 , C A:812
binding site for residue MG A 1636
34
AF7
SOFTWARE
G A:251 , A A:270
binding site for residue MG A 1637
35
AF8
SOFTWARE
U A:13 , A A:915 , G A:916
binding site for residue MG A 1638
36
AF9
SOFTWARE
A A:782 , A A:794
binding site for residue MG A 1639
37
AG1
SOFTWARE
U A:921 , G A:922 , U A:1393
binding site for residue MG A 1640
38
AG2
SOFTWARE
C A:817 , G A:818 , A A:819 , C A:1527 , U A:1528
binding site for residue MG A 1641
39
AG3
SOFTWARE
A A:559 , U A:560
binding site for residue MG A 1642
40
AG4
SOFTWARE
G A:595 , C A:596 , G A:597 , U A:598
binding site for residue MG A 1644
41
AG5
SOFTWARE
A A:781
binding site for residue MG A 1645
42
AG6
SOFTWARE
U A:804
binding site for residue MG A 1646
43
AG7
SOFTWARE
G A:41
binding site for residue MG A 1647
44
AG8
SOFTWARE
A A:572
binding site for residue MG A 1648
45
AG9
SOFTWARE
G A:1416 , G A:1417
binding site for residue MG A 1649
46
AH1
SOFTWARE
G A:331 , G A:351 , C A:352
binding site for residue MG A 1650
47
AH2
SOFTWARE
G A:361 , G A:362
binding site for residue MG A 1651
48
AH3
SOFTWARE
G A:406
binding site for residue MG A 1652
49
AH4
SOFTWARE
U A:20 , GLY E:124
binding site for residue MG A 1653
50
AH5
SOFTWARE
G A:21
binding site for residue MG A 1654
51
AH6
SOFTWARE
G A:895
binding site for residue MG A 1655
52
AH7
SOFTWARE
G A:35 , C A:36 , C A:398
binding site for residue MG A 1656
53
AH8
SOFTWARE
G A:324
binding site for residue MG A 1658
54
AH9
SOFTWARE
G A:377
binding site for residue MG A 1659
55
AI1
SOFTWARE
U A:437 , G A:438
binding site for residue MG A 1661
56
AI2
SOFTWARE
A A:109 , A A:329 , G A:331
binding site for residue MG A 1662
57
AI3
SOFTWARE
C A:314 , C A:328 , C A:330
binding site for residue MG A 1663
58
AI4
SOFTWARE
C A:355
binding site for residue MG A 1665
59
AI5
SOFTWARE
U A:359
binding site for residue MG A 1666
60
AI6
SOFTWARE
G A:617 , A A:621
binding site for residue MG A 1667
61
AI7
SOFTWARE
G A:660 , G A:661
binding site for residue MG A 1670
62
AI8
SOFTWARE
G A:506 , C A:508 , A A:509 , A A:510
binding site for residue MG A 1671
63
AI9
SOFTWARE
G A:332 , G A:333
binding site for residue MG A 1672
64
AJ1
SOFTWARE
G A:858 , G A:869
binding site for residue MG A 1673
65
AJ2
SOFTWARE
A A:860
binding site for residue MG A 1674
66
AJ3
SOFTWARE
G A:727
binding site for residue MG A 1675
67
AJ4
SOFTWARE
C A:569 , G A:570
binding site for residue MG A 1676
68
AJ5
SOFTWARE
G A:316
binding site for residue MG A 1677
69
AJ6
SOFTWARE
A A:53 , A A:353
binding site for residue MG A 1678
70
AJ7
SOFTWARE
G A:64 , A A:383
binding site for residue MG A 1679
71
AJ8
SOFTWARE
A A:116 , G A:117 , A A:288 , G A:289
binding site for residue MG A 1680
72
AJ9
SOFTWARE
G A:752
binding site for residue MG A 1681
73
AK1
SOFTWARE
G A:587 , G A:588
binding site for residue MG A 1682
74
AK2
SOFTWARE
A A:547 , G A:548
binding site for residue MG A 1684
75
AK3
SOFTWARE
G A:396
binding site for residue MG A 1685
76
AK4
SOFTWARE
G A:46 , C A:366 , G A:394
binding site for residue MG A 1686
77
AK5
SOFTWARE
A A:918
binding site for residue MG A 1688
78
AK6
SOFTWARE
A A:608
binding site for residue MG A 1691
79
AK7
SOFTWARE
U A:1498 , A A:1499 , A A:1500 , G A:1504 , G A:1505
binding site for residue MG A 1692
80
AK8
SOFTWARE
C A:936
binding site for residue MG A 1693
81
AK9
SOFTWARE
G A:577 , C A:578 , U A:820
binding site for residue MG A 1694
82
AL1
SOFTWARE
C A:1076
binding site for residue MG A 1695
83
AL2
SOFTWARE
C A:779 , A A:780 , LYS K:122
binding site for residue MG A 1696
84
AL3
SOFTWARE
A A:583 , G A:585
binding site for residue MG A 1697
85
AL4
SOFTWARE
U A:45
binding site for residue MG A 1698
86
AL5
SOFTWARE
U A:239
binding site for residue MG A 1699
87
AL6
SOFTWARE
G A:830
binding site for residue MG A 1700
88
AL7
SOFTWARE
G A:299 , G A:557 , G A:558
binding site for residue MG A 1701
89
AL8
SOFTWARE
C A:536 , G A:537
binding site for residue MG A 1702
90
AL9
SOFTWARE
A A:759 , G A:760
binding site for residue MG A 1703
91
AM1
SOFTWARE
G A:265
binding site for residue MG A 1704
92
AM2
SOFTWARE
G A:64
binding site for residue MG A 1705
93
AM3
SOFTWARE
C A:503
binding site for residue MG A 1707
94
AM4
SOFTWARE
C A:519 , A A:520 , THR W:6
binding site for residue MG A 1708
95
AM5
SOFTWARE
CYS D:9 , LYS D:22 , CYS D:26 , CYS D:31
binding site for residue ZN D 300
96
AM6
SOFTWARE
CYS N:24 , VAL N:25 , ARG N:26 , CYS N:27
binding site for residue ZN N 101
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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