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5LMO
Asym. Unit
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Asym.Unit (928 KB)
Biol.Unit 1 (917 KB)
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(1)
Title
:
STRUCTURE OF BACTERIAL 30S-IF1-IF3-MRNA TRANSLATION PRE-INITIATION COMPLEX (STATE-1B)
Authors
:
T. Hussain, J. L. Llacer, B. T. Wimberly, V. Ramakrishnan
Date
:
01 Aug 16 (Deposition) - 05 Oct 16 (Release) - 05 Oct 16 (Revision)
Method
:
ELECTRON MICROSCOPY
Resolution
:
4.30
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,V,W,X,Y
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,V,W,X,Y (1x)
Keywords
:
Ribosome, Translation, Initiation Factors, 30S, If1, If3, Pic, Thermus Thermophilus
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. Hussain, J. L. Llacer, B. T. Wimberly, J. S. Kieft, V. Ramakrishnan
Large-Scale Movements Of If3 And Trna During Bacterial Translation Initiation.
Cell V. 167 133 2016
[
close entry info
]
Hetero Components
(5, 116)
Info
All Hetero Components
1a: ADENOSINE-5'-MONOPHOSPHATE (Aa)
1b: ADENOSINE-5'-MONOPHOSPHATE (Ab)
1c: ADENOSINE-5'-MONOPHOSPHATE (Ac)
2a: GUANOSINE-5'-MONOPHOSPHATE (Ga)
3a: MAGNESIUM ION (MGa)
3aa: MAGNESIUM ION (MGaa)
3ab: MAGNESIUM ION (MGab)
3ac: MAGNESIUM ION (MGac)
3ad: MAGNESIUM ION (MGad)
3ae: MAGNESIUM ION (MGae)
3af: MAGNESIUM ION (MGaf)
3ag: MAGNESIUM ION (MGag)
3ah: MAGNESIUM ION (MGah)
3ai: MAGNESIUM ION (MGai)
3aj: MAGNESIUM ION (MGaj)
3ak: MAGNESIUM ION (MGak)
3al: MAGNESIUM ION (MGal)
3am: MAGNESIUM ION (MGam)
3an: MAGNESIUM ION (MGan)
3ao: MAGNESIUM ION (MGao)
3ap: MAGNESIUM ION (MGap)
3aq: MAGNESIUM ION (MGaq)
3ar: MAGNESIUM ION (MGar)
3as: MAGNESIUM ION (MGas)
3at: MAGNESIUM ION (MGat)
3au: MAGNESIUM ION (MGau)
3av: MAGNESIUM ION (MGav)
3aw: MAGNESIUM ION (MGaw)
3ax: MAGNESIUM ION (MGax)
3ay: MAGNESIUM ION (MGay)
3az: MAGNESIUM ION (MGaz)
3b: MAGNESIUM ION (MGb)
3ba: MAGNESIUM ION (MGba)
3bb: MAGNESIUM ION (MGbb)
3bc: MAGNESIUM ION (MGbc)
3bd: MAGNESIUM ION (MGbd)
3be: MAGNESIUM ION (MGbe)
3bf: MAGNESIUM ION (MGbf)
3bg: MAGNESIUM ION (MGbg)
3bh: MAGNESIUM ION (MGbh)
3bi: MAGNESIUM ION (MGbi)
3bj: MAGNESIUM ION (MGbj)
3bk: MAGNESIUM ION (MGbk)
3bl: MAGNESIUM ION (MGbl)
3bm: MAGNESIUM ION (MGbm)
3bn: MAGNESIUM ION (MGbn)
3bo: MAGNESIUM ION (MGbo)
3bp: MAGNESIUM ION (MGbp)
3bq: MAGNESIUM ION (MGbq)
3br: MAGNESIUM ION (MGbr)
3bs: MAGNESIUM ION (MGbs)
3bt: MAGNESIUM ION (MGbt)
3bu: MAGNESIUM ION (MGbu)
3bv: MAGNESIUM ION (MGbv)
3bw: MAGNESIUM ION (MGbw)
3bx: MAGNESIUM ION (MGbx)
3by: MAGNESIUM ION (MGby)
3bz: MAGNESIUM ION (MGbz)
3c: MAGNESIUM ION (MGc)
3ca: MAGNESIUM ION (MGca)
3cb: MAGNESIUM ION (MGcb)
3cc: MAGNESIUM ION (MGcc)
3cd: MAGNESIUM ION (MGcd)
3ce: MAGNESIUM ION (MGce)
3cf: MAGNESIUM ION (MGcf)
3cg: MAGNESIUM ION (MGcg)
3ch: MAGNESIUM ION (MGch)
3ci: MAGNESIUM ION (MGci)
3cj: MAGNESIUM ION (MGcj)
3ck: MAGNESIUM ION (MGck)
3cl: MAGNESIUM ION (MGcl)
3cm: MAGNESIUM ION (MGcm)
3cn: MAGNESIUM ION (MGcn)
3co: MAGNESIUM ION (MGco)
3cp: MAGNESIUM ION (MGcp)
3cq: MAGNESIUM ION (MGcq)
3cr: MAGNESIUM ION (MGcr)
3cs: MAGNESIUM ION (MGcs)
3ct: MAGNESIUM ION (MGct)
3cu: MAGNESIUM ION (MGcu)
3cv: MAGNESIUM ION (MGcv)
3cw: MAGNESIUM ION (MGcw)
3cx: MAGNESIUM ION (MGcx)
3cy: MAGNESIUM ION (MGcy)
3cz: MAGNESIUM ION (MGcz)
3d: MAGNESIUM ION (MGd)
3da: MAGNESIUM ION (MGda)
3db: MAGNESIUM ION (MGdb)
3dc: MAGNESIUM ION (MGdc)
3dd: MAGNESIUM ION (MGdd)
3e: MAGNESIUM ION (MGe)
3f: MAGNESIUM ION (MGf)
3g: MAGNESIUM ION (MGg)
3h: MAGNESIUM ION (MGh)
3i: MAGNESIUM ION (MGi)
3j: MAGNESIUM ION (MGj)
3k: MAGNESIUM ION (MGk)
3l: MAGNESIUM ION (MGl)
3m: MAGNESIUM ION (MGm)
3n: MAGNESIUM ION (MGn)
3o: MAGNESIUM ION (MGo)
3p: MAGNESIUM ION (MGp)
3q: MAGNESIUM ION (MGq)
3r: MAGNESIUM ION (MGr)
3s: MAGNESIUM ION (MGs)
3t: MAGNESIUM ION (MGt)
3u: MAGNESIUM ION (MGu)
3v: MAGNESIUM ION (MGv)
3w: MAGNESIUM ION (MGw)
3x: MAGNESIUM ION (MGx)
3y: MAGNESIUM ION (MGy)
3z: MAGNESIUM ION (MGz)
4a: URIDINE-5'-MONOPHOSPHATE (Ua)
4b: URIDINE-5'-MONOPHOSPHATE (Ub)
5a: ZINC ION (ZNa)
5b: ZINC ION (ZNb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
A
3
Ligand/Ion
ADENOSINE-5'-MONOPHOSPHATE
2
G
1
Ligand/Ion
GUANOSINE-5'-MONOPHOSPHATE
3
MG
108
Ligand/Ion
MAGNESIUM ION
4
U
2
Ligand/Ion
URIDINE-5'-MONOPHOSPHATE
5
ZN
2
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(105, 105)
Info
All Sites
001: AC1 (SOFTWARE)
002: AC2 (SOFTWARE)
003: AC3 (SOFTWARE)
004: AC4 (SOFTWARE)
005: AC5 (SOFTWARE)
006: AC6 (SOFTWARE)
007: AC7 (SOFTWARE)
008: AC8 (SOFTWARE)
009: AC9 (SOFTWARE)
010: AD1 (SOFTWARE)
011: AD2 (SOFTWARE)
012: AD3 (SOFTWARE)
013: AD4 (SOFTWARE)
014: AD5 (SOFTWARE)
015: AD6 (SOFTWARE)
016: AD7 (SOFTWARE)
017: AD8 (SOFTWARE)
018: AD9 (SOFTWARE)
019: AE1 (SOFTWARE)
020: AE2 (SOFTWARE)
021: AE3 (SOFTWARE)
022: AE4 (SOFTWARE)
023: AE5 (SOFTWARE)
024: AE6 (SOFTWARE)
025: AE7 (SOFTWARE)
026: AE8 (SOFTWARE)
027: AE9 (SOFTWARE)
028: AF1 (SOFTWARE)
029: AF2 (SOFTWARE)
030: AF3 (SOFTWARE)
031: AF4 (SOFTWARE)
032: AF5 (SOFTWARE)
033: AF6 (SOFTWARE)
034: AF7 (SOFTWARE)
035: AF8 (SOFTWARE)
036: AF9 (SOFTWARE)
037: AG1 (SOFTWARE)
038: AG2 (SOFTWARE)
039: AG3 (SOFTWARE)
040: AG4 (SOFTWARE)
041: AG5 (SOFTWARE)
042: AG6 (SOFTWARE)
043: AG7 (SOFTWARE)
044: AG8 (SOFTWARE)
045: AG9 (SOFTWARE)
046: AH1 (SOFTWARE)
047: AH2 (SOFTWARE)
048: AH3 (SOFTWARE)
049: AH4 (SOFTWARE)
050: AH5 (SOFTWARE)
051: AH6 (SOFTWARE)
052: AH7 (SOFTWARE)
053: AH8 (SOFTWARE)
054: AH9 (SOFTWARE)
055: AI1 (SOFTWARE)
056: AI2 (SOFTWARE)
057: AI3 (SOFTWARE)
058: AI4 (SOFTWARE)
059: AI5 (SOFTWARE)
060: AI6 (SOFTWARE)
061: AI7 (SOFTWARE)
062: AI8 (SOFTWARE)
063: AI9 (SOFTWARE)
064: AJ1 (SOFTWARE)
065: AJ2 (SOFTWARE)
066: AJ3 (SOFTWARE)
067: AJ4 (SOFTWARE)
068: AJ5 (SOFTWARE)
069: AJ6 (SOFTWARE)
070: AJ7 (SOFTWARE)
071: AJ8 (SOFTWARE)
072: AJ9 (SOFTWARE)
073: AK1 (SOFTWARE)
074: AK2 (SOFTWARE)
075: AK3 (SOFTWARE)
076: AK4 (SOFTWARE)
077: AK5 (SOFTWARE)
078: AK6 (SOFTWARE)
079: AK7 (SOFTWARE)
080: AK8 (SOFTWARE)
081: AK9 (SOFTWARE)
082: AL1 (SOFTWARE)
083: AL2 (SOFTWARE)
084: AL3 (SOFTWARE)
085: AL4 (SOFTWARE)
086: AL5 (SOFTWARE)
087: AL6 (SOFTWARE)
088: AL7 (SOFTWARE)
089: AL8 (SOFTWARE)
090: AL9 (SOFTWARE)
091: AM1 (SOFTWARE)
092: AM2 (SOFTWARE)
093: AM3 (SOFTWARE)
094: AM4 (SOFTWARE)
095: AM5 (SOFTWARE)
096: AM6 (SOFTWARE)
097: AM7 (SOFTWARE)
098: AM8 (SOFTWARE)
099: AM9 (SOFTWARE)
100: AN1 (SOFTWARE)
101: AN2 (SOFTWARE)
102: AN3 (SOFTWARE)
103: AN4 (SOFTWARE)
104: AN5 (SOFTWARE)
105: AN6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
001
AC1
SOFTWARE
A A:1502 , G A:1530
binding site for residue MG A 1601
002
AC2
SOFTWARE
G A:251 , U A:252 , C A:267 , C A:268 , LYS Q:67
binding site for residue MG A 1602
003
AC3
SOFTWARE
A A:315
binding site for residue MG A 1603
004
AC4
SOFTWARE
G A:148 , A A:172
binding site for residue MG A 1604
005
AC5
SOFTWARE
U A:1510 , G A:1511 , U A:1512 , U A:1522
binding site for residue MG A 1605
006
AC6
SOFTWARE
U A:12 , U A:13 , U A:14 , G A:527 , A A:914
binding site for residue MG A 1606
007
AC7
SOFTWARE
G A:107 , G A:324
binding site for residue MG A 1607
008
AC8
SOFTWARE
U A:793
binding site for residue MG A 1608
009
AC9
SOFTWARE
A A:787 , U A:788
binding site for residue MG A 1609
010
AD1
SOFTWARE
A A:1500 , G A:1504 , G A:1505 , A A:1507 , G A:1508
binding site for residue MG A 1611
011
AD2
SOFTWARE
C A:121 , G A:124 , U A:125 , G A:126 , G A:236
binding site for residue MG A 1612
012
AD3
SOFTWARE
G A:181 , C A:194 , A A:195
binding site for residue MG A 1613
013
AD4
SOFTWARE
C A:748 , C A:749 , G A:750
binding site for residue MG A 1614
014
AD5
SOFTWARE
G A:309
binding site for residue MG A 1615
015
AD6
SOFTWARE
G A:371 , C A:372
binding site for residue MG A 1616
016
AD7
SOFTWARE
C A:48 , U A:114 , G A:115
binding site for residue MG A 1617
017
AD8
SOFTWARE
C A:504 , G A:505
binding site for residue MG A 1618
018
AD9
SOFTWARE
A A:563 , U A:565 , G A:566 , G A:567
binding site for residue MG A 1619
019
AE1
SOFTWARE
U A:287
binding site for residue MG A 1620
020
AE2
SOFTWARE
G A:579
binding site for residue MG A 1621
021
AE3
SOFTWARE
C A:290 , C A:291
binding site for residue MG A 1623
022
AE4
SOFTWARE
C A:58 , A A:59 , C A:386 , U A:387
binding site for residue MG A 1624
023
AE5
SOFTWARE
G A:730 , A A:816 , C A:817
binding site for residue MG A 1625
024
AE6
SOFTWARE
G A:771
binding site for residue MG A 1626
025
AE7
SOFTWARE
A A:572 , A A:573 , A A:574
binding site for residue MG A 1627
026
AE8
SOFTWARE
G A:854
binding site for residue MG A 1628
027
AE9
SOFTWARE
A A:431
binding site for residue MG A 1629
028
AF1
SOFTWARE
A A:609 , G A:610
binding site for residue MG A 1630
029
AF2
SOFTWARE
U A:757 , G A:758
binding site for residue MG A 1631
030
AF3
SOFTWARE
G A:576
binding site for residue MG A 1632
031
AF4
SOFTWARE
C A:355 , G A:357
binding site for residue MG A 1633
032
AF5
SOFTWARE
G A:903
binding site for residue MG A 1634
033
AF6
SOFTWARE
A A:768
binding site for residue MG A 1635
034
AF7
SOFTWARE
A A:766 , C A:812
binding site for residue MG A 1636
035
AF8
SOFTWARE
G A:251 , A A:270
binding site for residue MG A 1637
036
AF9
SOFTWARE
U A:13 , G A:916
binding site for residue MG A 1638
037
AG1
SOFTWARE
A A:782 , A A:794
binding site for residue MG A 1639
038
AG2
SOFTWARE
U A:921 , G A:922 , U A:1393
binding site for residue MG A 1640
039
AG3
SOFTWARE
C A:817 , G A:818 , A A:819 , C A:1527 , U A:1528
binding site for residue MG A 1641
040
AG4
SOFTWARE
A A:559 , U A:560
binding site for residue MG A 1642
041
AG5
SOFTWARE
U A:486
binding site for residue MG A 1643
042
AG6
SOFTWARE
G A:595 , C A:596 , G A:597 , U A:598
binding site for residue MG A 1644
043
AG7
SOFTWARE
A A:781
binding site for residue MG A 1645
044
AG8
SOFTWARE
U A:804
binding site for residue MG A 1646
045
AG9
SOFTWARE
G A:41
binding site for residue MG A 1647
046
AH1
SOFTWARE
A A:572
binding site for residue MG A 1648
047
AH2
SOFTWARE
G A:1416 , G A:1417
binding site for residue MG A 1649
048
AH3
SOFTWARE
G A:351 , C A:352
binding site for residue MG A 1650
049
AH4
SOFTWARE
G A:361 , G A:362
binding site for residue MG A 1651
050
AH5
SOFTWARE
U A:20 , GLY E:124
binding site for residue MG A 1653
051
AH6
SOFTWARE
G A:21
binding site for residue MG A 1654
052
AH7
SOFTWARE
G A:895
binding site for residue MG A 1655
053
AH8
SOFTWARE
G A:35 , C A:36 , C A:398
binding site for residue MG A 1656
054
AH9
SOFTWARE
A A:16
binding site for residue MG A 1657
055
AI1
SOFTWARE
G A:324
binding site for residue MG A 1658
056
AI2
SOFTWARE
G A:377
binding site for residue MG A 1659
057
AI3
SOFTWARE
G A:1526
binding site for residue MG A 1660
058
AI4
SOFTWARE
U A:437 , G A:438
binding site for residue MG A 1661
059
AI5
SOFTWARE
A A:109 , A A:329 , C A:330 , G A:331
binding site for residue MG A 1662
060
AI6
SOFTWARE
C A:328 , C A:330
binding site for residue MG A 1663
061
AI7
SOFTWARE
G A:113
binding site for residue MG A 1664
062
AI8
SOFTWARE
C A:355
binding site for residue MG A 1665
063
AI9
SOFTWARE
U A:359 , A A:360
binding site for residue MG A 1666
064
AJ1
SOFTWARE
G A:617 , A A:621
binding site for residue MG A 1667
065
AJ2
SOFTWARE
G A:657
binding site for residue MG A 1669
066
AJ3
SOFTWARE
G A:660 , G A:661
binding site for residue MG A 1670
067
AJ4
SOFTWARE
G A:506 , C A:507 , C A:508 , A A:509 , A A:510
binding site for residue MG A 1671
068
AJ5
SOFTWARE
G A:332
binding site for residue MG A 1672
069
AJ6
SOFTWARE
G A:858 , G A:869
binding site for residue MG A 1673
070
AJ7
SOFTWARE
A A:860
binding site for residue MG A 1674
071
AJ8
SOFTWARE
C A:569
binding site for residue MG A 1676
072
AJ9
SOFTWARE
G A:316
binding site for residue MG A 1677
073
AK1
SOFTWARE
A A:53 , A A:353
binding site for residue MG A 1678
074
AK2
SOFTWARE
G A:64 , A A:383
binding site for residue MG A 1679
075
AK3
SOFTWARE
A A:116 , G A:117 , A A:288 , G A:289
binding site for residue MG A 1680
076
AK4
SOFTWARE
C A:651 , G A:752
binding site for residue MG A 1681
077
AK5
SOFTWARE
G A:587 , G A:588 , C A:645
binding site for residue MG A 1682
078
AK6
SOFTWARE
A A:547 , G A:548
binding site for residue MG A 1684
079
AK7
SOFTWARE
G A:396 , A A:397
binding site for residue MG A 1685
080
AK8
SOFTWARE
G A:46 , C A:366 , U A:367 , G A:394
binding site for residue MG A 1686
081
AK9
SOFTWARE
A A:918
binding site for residue MG A 1688
082
AL1
SOFTWARE
A A:608
binding site for residue MG A 1691
083
AL2
SOFTWARE
U A:1498 , A A:1499 , A A:1500 , G A:1504 , G A:1505
binding site for residue MG A 1692
084
AL3
SOFTWARE
C A:936
binding site for residue MG A 1693
085
AL4
SOFTWARE
G A:577 , C A:578 , U A:820 , G A:821
binding site for residue MG A 1694
086
AL5
SOFTWARE
C A:779 , A A:780
binding site for residue MG A 1696
087
AL6
SOFTWARE
A A:583 , G A:585 , ARG O:68
binding site for residue MG A 1697
088
AL7
SOFTWARE
U A:45
binding site for residue MG A 1698
089
AL8
SOFTWARE
U A:239
binding site for residue MG A 1699
090
AL9
SOFTWARE
G A:830
binding site for residue MG A 1700
091
AM1
SOFTWARE
G A:299 , G A:557 , G A:558 , U A:560
binding site for residue MG A 1701
092
AM2
SOFTWARE
C A:536
binding site for residue MG A 1702
093
AM3
SOFTWARE
A A:759 , G A:760
binding site for residue MG A 1703
094
AM4
SOFTWARE
G A:265
binding site for residue MG A 1704
095
AM5
SOFTWARE
G A:64
binding site for residue MG A 1705
096
AM6
SOFTWARE
U A:863 , GLU E:83
binding site for residue MG A 1706
097
AM7
SOFTWARE
A A:1709
binding site for residue A A 1708
098
AM8
SOFTWARE
G A:926 , A A:1708 , A X:201
binding site for residue A A 1709
099
AM9
SOFTWARE
C A:1400 , U W:102 , ARG X:123 , U X:202
binding site for residue G A 1710
100
AN1
SOFTWARE
CYS D:9 , LYS D:22 , CYS D:26 , CYS D:31
binding site for residue ZN D 300
101
AN2
SOFTWARE
CYS N:24 , VAL N:25 , ARG N:26 , CYS N:27
binding site for residue ZN N 101
102
AN3
SOFTWARE
C A:519 , LYS W:2 , LYS W:4
binding site for residue MG W 101
103
AN4
SOFTWARE
G A:1710 , ARG W:46 , ARG X:125
binding site for residue U W 102
104
AN5
SOFTWARE
G A:1497 , A A:1709 , LYS X:89 , ARG X:91 , MET X:121 , U X:202
binding site for residue A X 201
105
AN6
SOFTWARE
G A:1710 , PHE X:122 , A X:201
binding site for residue U X 202
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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all CATH domains
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Pfam Domains
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all PFAM domains
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Atom Selection
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select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
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Asym.Unit (928 KB)
Header - Asym.Unit
Biol.Unit 1 (917 KB)
Header - Biol.Unit 1
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