PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
5LMN
Biol. Unit 1
Info
Asym.Unit (1.1 MB)
Biol.Unit 1, α-C (1.1 MB)
Biol.Unit 1 (1.1 MB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
STRUCTURE OF BACTERIAL 30S-IF1-IF3-MRNA TRANSLATION PRE-INITIATION COMPLEX (STATE-1A)
Authors
:
T. Hussain, J. L. Llacer, B. T. Wimberly, V. Ramakrishnan
Date
:
01 Aug 16 (Deposition) - 05 Oct 16 (Release) - 26 Oct 16 (Revision)
Method
:
ELECTRON MICROSCOPY
Resolution
:
3.55
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,V,W,X,Y
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,V,W,X,Y (1x)
Keywords
:
Ribosome, Translation, Initiation Factors, 30S, If1, If3, Pic, Thermus Thermophilus
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. Hussain, J. L. Llacer, B. T. Wimberly, J. S. Kieft, V. Ramakrishnan
Large-Scale Movements Of If3 And Trna During Bacterial Translation Initiation.
Cell V. 167 133 2016
[
close entry info
]
Hetero Components
(0, 0)
Info
All Hetero Components
1a: MAGNESIUM ION (MGa)
1aa: MAGNESIUM ION (MGaa)
1ab: MAGNESIUM ION (MGab)
1ac: MAGNESIUM ION (MGac)
1ad: MAGNESIUM ION (MGad)
1ae: MAGNESIUM ION (MGae)
1af: MAGNESIUM ION (MGaf)
1ag: MAGNESIUM ION (MGag)
1ah: MAGNESIUM ION (MGah)
1ai: MAGNESIUM ION (MGai)
1aj: MAGNESIUM ION (MGaj)
1ak: MAGNESIUM ION (MGak)
1al: MAGNESIUM ION (MGal)
1am: MAGNESIUM ION (MGam)
1an: MAGNESIUM ION (MGan)
1ao: MAGNESIUM ION (MGao)
1ap: MAGNESIUM ION (MGap)
1aq: MAGNESIUM ION (MGaq)
1ar: MAGNESIUM ION (MGar)
1as: MAGNESIUM ION (MGas)
1at: MAGNESIUM ION (MGat)
1au: MAGNESIUM ION (MGau)
1av: MAGNESIUM ION (MGav)
1aw: MAGNESIUM ION (MGaw)
1ax: MAGNESIUM ION (MGax)
1ay: MAGNESIUM ION (MGay)
1az: MAGNESIUM ION (MGaz)
1b: MAGNESIUM ION (MGb)
1ba: MAGNESIUM ION (MGba)
1bb: MAGNESIUM ION (MGbb)
1bc: MAGNESIUM ION (MGbc)
1bd: MAGNESIUM ION (MGbd)
1be: MAGNESIUM ION (MGbe)
1bf: MAGNESIUM ION (MGbf)
1bg: MAGNESIUM ION (MGbg)
1bh: MAGNESIUM ION (MGbh)
1bi: MAGNESIUM ION (MGbi)
1bj: MAGNESIUM ION (MGbj)
1bk: MAGNESIUM ION (MGbk)
1bl: MAGNESIUM ION (MGbl)
1bm: MAGNESIUM ION (MGbm)
1bn: MAGNESIUM ION (MGbn)
1bo: MAGNESIUM ION (MGbo)
1bp: MAGNESIUM ION (MGbp)
1bq: MAGNESIUM ION (MGbq)
1br: MAGNESIUM ION (MGbr)
1bs: MAGNESIUM ION (MGbs)
1bt: MAGNESIUM ION (MGbt)
1bu: MAGNESIUM ION (MGbu)
1bv: MAGNESIUM ION (MGbv)
1bw: MAGNESIUM ION (MGbw)
1bx: MAGNESIUM ION (MGbx)
1by: MAGNESIUM ION (MGby)
1bz: MAGNESIUM ION (MGbz)
1c: MAGNESIUM ION (MGc)
1ca: MAGNESIUM ION (MGca)
1cb: MAGNESIUM ION (MGcb)
1cc: MAGNESIUM ION (MGcc)
1cd: MAGNESIUM ION (MGcd)
1ce: MAGNESIUM ION (MGce)
1cf: MAGNESIUM ION (MGcf)
1cg: MAGNESIUM ION (MGcg)
1ch: MAGNESIUM ION (MGch)
1ci: MAGNESIUM ION (MGci)
1cj: MAGNESIUM ION (MGcj)
1ck: MAGNESIUM ION (MGck)
1cl: MAGNESIUM ION (MGcl)
1cm: MAGNESIUM ION (MGcm)
1cn: MAGNESIUM ION (MGcn)
1co: MAGNESIUM ION (MGco)
1cp: MAGNESIUM ION (MGcp)
1cq: MAGNESIUM ION (MGcq)
1cr: MAGNESIUM ION (MGcr)
1cs: MAGNESIUM ION (MGcs)
1ct: MAGNESIUM ION (MGct)
1cu: MAGNESIUM ION (MGcu)
1cv: MAGNESIUM ION (MGcv)
1cw: MAGNESIUM ION (MGcw)
1cx: MAGNESIUM ION (MGcx)
1cy: MAGNESIUM ION (MGcy)
1cz: MAGNESIUM ION (MGcz)
1d: MAGNESIUM ION (MGd)
1da: MAGNESIUM ION (MGda)
1db: MAGNESIUM ION (MGdb)
1dc: MAGNESIUM ION (MGdc)
1dd: MAGNESIUM ION (MGdd)
1de: MAGNESIUM ION (MGde)
1df: MAGNESIUM ION (MGdf)
1dg: MAGNESIUM ION (MGdg)
1dh: MAGNESIUM ION (MGdh)
1di: MAGNESIUM ION (MGdi)
1dj: MAGNESIUM ION (MGdj)
1dk: MAGNESIUM ION (MGdk)
1dl: MAGNESIUM ION (MGdl)
1dm: MAGNESIUM ION (MGdm)
1dn: MAGNESIUM ION (MGdn)
1do: MAGNESIUM ION (MGdo)
1dp: MAGNESIUM ION (MGdp)
1dq: MAGNESIUM ION (MGdq)
1dr: MAGNESIUM ION (MGdr)
1ds: MAGNESIUM ION (MGds)
1dt: MAGNESIUM ION (MGdt)
1du: MAGNESIUM ION (MGdu)
1dv: MAGNESIUM ION (MGdv)
1dw: MAGNESIUM ION (MGdw)
1e: MAGNESIUM ION (MGe)
1f: MAGNESIUM ION (MGf)
1g: MAGNESIUM ION (MGg)
1h: MAGNESIUM ION (MGh)
1i: MAGNESIUM ION (MGi)
1j: MAGNESIUM ION (MGj)
1k: MAGNESIUM ION (MGk)
1l: MAGNESIUM ION (MGl)
1m: MAGNESIUM ION (MGm)
1n: MAGNESIUM ION (MGn)
1o: MAGNESIUM ION (MGo)
1p: MAGNESIUM ION (MGp)
1q: MAGNESIUM ION (MGq)
1r: MAGNESIUM ION (MGr)
1s: MAGNESIUM ION (MGs)
1t: MAGNESIUM ION (MGt)
1u: MAGNESIUM ION (MGu)
1v: MAGNESIUM ION (MGv)
1w: MAGNESIUM ION (MGw)
1x: MAGNESIUM ION (MGx)
1y: MAGNESIUM ION (MGy)
1z: MAGNESIUM ION (MGz)
2a: ZINC ION (ZNa)
2b: ZINC ION (ZNb)
View:
Select:
Label:
Sorry, no Info available
[
close Hetero component info
]
Sites
(108, 108)
Info
All Sites
001: AC1 (SOFTWARE)
002: AC2 (SOFTWARE)
003: AC3 (SOFTWARE)
004: AC4 (SOFTWARE)
005: AC5 (SOFTWARE)
006: AC6 (SOFTWARE)
007: AC7 (SOFTWARE)
008: AC8 (SOFTWARE)
009: AC9 (SOFTWARE)
010: AD1 (SOFTWARE)
011: AD2 (SOFTWARE)
012: AD3 (SOFTWARE)
013: AD4 (SOFTWARE)
014: AD5 (SOFTWARE)
015: AD6 (SOFTWARE)
016: AD7 (SOFTWARE)
017: AD8 (SOFTWARE)
018: AD9 (SOFTWARE)
019: AE1 (SOFTWARE)
020: AE2 (SOFTWARE)
021: AE3 (SOFTWARE)
022: AE4 (SOFTWARE)
023: AE5 (SOFTWARE)
024: AE6 (SOFTWARE)
025: AE7 (SOFTWARE)
026: AE8 (SOFTWARE)
027: AE9 (SOFTWARE)
028: AF1 (SOFTWARE)
029: AF2 (SOFTWARE)
030: AF3 (SOFTWARE)
031: AF4 (SOFTWARE)
032: AF5 (SOFTWARE)
033: AF6 (SOFTWARE)
034: AF7 (SOFTWARE)
035: AF8 (SOFTWARE)
036: AF9 (SOFTWARE)
037: AG1 (SOFTWARE)
038: AG2 (SOFTWARE)
039: AG3 (SOFTWARE)
040: AG4 (SOFTWARE)
041: AG5 (SOFTWARE)
042: AG6 (SOFTWARE)
043: AG7 (SOFTWARE)
044: AG8 (SOFTWARE)
045: AG9 (SOFTWARE)
046: AH1 (SOFTWARE)
047: AH2 (SOFTWARE)
048: AH3 (SOFTWARE)
049: AH4 (SOFTWARE)
050: AH5 (SOFTWARE)
051: AH6 (SOFTWARE)
052: AH7 (SOFTWARE)
053: AH8 (SOFTWARE)
054: AH9 (SOFTWARE)
055: AI1 (SOFTWARE)
056: AI2 (SOFTWARE)
057: AI3 (SOFTWARE)
058: AI4 (SOFTWARE)
059: AI5 (SOFTWARE)
060: AI6 (SOFTWARE)
061: AI7 (SOFTWARE)
062: AI8 (SOFTWARE)
063: AI9 (SOFTWARE)
064: AJ1 (SOFTWARE)
065: AJ2 (SOFTWARE)
066: AJ3 (SOFTWARE)
067: AJ4 (SOFTWARE)
068: AJ5 (SOFTWARE)
069: AJ6 (SOFTWARE)
070: AJ7 (SOFTWARE)
071: AJ8 (SOFTWARE)
072: AJ9 (SOFTWARE)
073: AK1 (SOFTWARE)
074: AK2 (SOFTWARE)
075: AK3 (SOFTWARE)
076: AK4 (SOFTWARE)
077: AK5 (SOFTWARE)
078: AK6 (SOFTWARE)
079: AK7 (SOFTWARE)
080: AK8 (SOFTWARE)
081: AK9 (SOFTWARE)
082: AL1 (SOFTWARE)
083: AL2 (SOFTWARE)
084: AL3 (SOFTWARE)
085: AL4 (SOFTWARE)
086: AL5 (SOFTWARE)
087: AL6 (SOFTWARE)
088: AL7 (SOFTWARE)
089: AL8 (SOFTWARE)
090: AL9 (SOFTWARE)
091: AM1 (SOFTWARE)
092: AM2 (SOFTWARE)
093: AM3 (SOFTWARE)
094: AM4 (SOFTWARE)
095: AM5 (SOFTWARE)
096: AM6 (SOFTWARE)
097: AM7 (SOFTWARE)
098: AM8 (SOFTWARE)
099: AM9 (SOFTWARE)
100: AN1 (SOFTWARE)
101: AN2 (SOFTWARE)
102: AN3 (SOFTWARE)
103: AN4 (SOFTWARE)
104: AN5 (SOFTWARE)
105: AN6 (SOFTWARE)
106: AN7 (SOFTWARE)
107: AN8 (SOFTWARE)
108: AN9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
001
AC1
SOFTWARE
G A:251 , U A:252 , G A:266 , C A:267 , C A:268 , LYS Q:67
binding site for residue MG A 1602
002
AC2
SOFTWARE
A A:315
binding site for residue MG A 1603
003
AC3
SOFTWARE
G A:148 , A A:172
binding site for residue MG A 1604
004
AC4
SOFTWARE
U A:1510 , G A:1511 , U A:1512 , U A:1522
binding site for residue MG A 1605
005
AC5
SOFTWARE
C A:980 , G A:1220
binding site for residue MG A 1606
006
AC6
SOFTWARE
U A:12 , U A:13 , U A:14 , G A:527 , A A:914
binding site for residue MG A 1607
007
AC7
SOFTWARE
G A:107 , G A:324 , A A:325
binding site for residue MG A 1608
008
AC8
SOFTWARE
U A:793
binding site for residue MG A 1609
009
AC9
SOFTWARE
A A:787
binding site for residue MG A 1610
010
AD1
SOFTWARE
C A:970
binding site for residue MG A 1612
011
AD2
SOFTWARE
A A:1500 , G A:1504 , G A:1505 , A A:1507 , G A:1508
binding site for residue MG A 1613
012
AD3
SOFTWARE
C A:121 , G A:124 , U A:125 , G A:126 , C A:235 , G A:236
binding site for residue MG A 1614
013
AD4
SOFTWARE
G A:181 , A A:195
binding site for residue MG A 1615
014
AD5
SOFTWARE
G A:1361
binding site for residue MG A 1616
015
AD6
SOFTWARE
C A:748 , C A:749 , G A:750
binding site for residue MG A 1617
016
AD7
SOFTWARE
G A:309
binding site for residue MG A 1618
017
AD8
SOFTWARE
G A:371 , C A:372
binding site for residue MG A 1619
018
AD9
SOFTWARE
U A:1083
binding site for residue MG A 1620
019
AE1
SOFTWARE
C A:47 , C A:48 , U A:114 , G A:115
binding site for residue MG A 1621
020
AE2
SOFTWARE
C A:504 , G A:505
binding site for residue MG A 1622
021
AE3
SOFTWARE
A A:563 , C A:564 , U A:565 , G A:566
binding site for residue MG A 1623
022
AE4
SOFTWARE
U A:287
binding site for residue MG A 1624
023
AE5
SOFTWARE
G A:579
binding site for residue MG A 1625
024
AE6
SOFTWARE
C A:1054 , U A:1196 , G A:1197 , G A:1198
binding site for residue MG A 1626
025
AE7
SOFTWARE
C A:290
binding site for residue MG A 1628
026
AE8
SOFTWARE
C A:58 , A A:59 , C A:386 , U A:387
binding site for residue MG A 1629
027
AE9
SOFTWARE
G A:730
binding site for residue MG A 1630
028
AF1
SOFTWARE
A A:572 , A A:573 , A A:574
binding site for residue MG A 1632
029
AF2
SOFTWARE
G A:854 , U A:871
binding site for residue MG A 1633
030
AF3
SOFTWARE
C A:1069
binding site for residue MG A 1634
031
AF4
SOFTWARE
A A:431
binding site for residue MG A 1635
032
AF5
SOFTWARE
A A:609 , G A:610
binding site for residue MG A 1636
033
AF6
SOFTWARE
G A:581 , G A:758
binding site for residue MG A 1637
034
AF7
SOFTWARE
G A:576
binding site for residue MG A 1638
035
AF8
SOFTWARE
C A:355
binding site for residue MG A 1639
036
AF9
SOFTWARE
G A:903
binding site for residue MG A 1640
037
AG1
SOFTWARE
A A:768
binding site for residue MG A 1641
038
AG2
SOFTWARE
A A:766
binding site for residue MG A 1642
039
AG3
SOFTWARE
G A:251 , A A:270
binding site for residue MG A 1643
040
AG4
SOFTWARE
A A:915 , G A:916
binding site for residue MG A 1644
041
AG5
SOFTWARE
A A:782 , A A:794
binding site for residue MG A 1645
042
AG6
SOFTWARE
G A:922 , U A:1393
binding site for residue MG A 1646
043
AG7
SOFTWARE
C A:817 , G A:818 , C A:1527 , U A:1528
binding site for residue MG A 1647
044
AG8
SOFTWARE
A A:559 , U A:560 , C A:562
binding site for residue MG A 1648
045
AG9
SOFTWARE
G A:595 , C A:596 , G A:597 , U A:598
binding site for residue MG A 1650
046
AH1
SOFTWARE
G A:798
binding site for residue MG A 1651
047
AH2
SOFTWARE
G A:41
binding site for residue MG A 1653
048
AH3
SOFTWARE
G A:1057 , G A:1058 , U A:1199
binding site for residue MG A 1654
049
AH4
SOFTWARE
G A:1370
binding site for residue MG A 1655
050
AH5
SOFTWARE
A A:572
binding site for residue MG A 1656
051
AH6
SOFTWARE
G A:1416 , G A:1417
binding site for residue MG A 1657
052
AH7
SOFTWARE
A A:59 , G A:331 , G A:351 , C A:352
binding site for residue MG A 1658
053
AH8
SOFTWARE
G A:361 , G A:362
binding site for residue MG A 1659
054
AH9
SOFTWARE
U A:20
binding site for residue MG A 1661
055
AI1
SOFTWARE
G A:21
binding site for residue MG A 1662
056
AI2
SOFTWARE
G A:895
binding site for residue MG A 1663
057
AI3
SOFTWARE
U A:1065 , C A:1066
binding site for residue MG A 1664
058
AI4
SOFTWARE
G A:35 , C A:36 , C A:398
binding site for residue MG A 1665
059
AI5
SOFTWARE
A A:1238 , C A:1335
binding site for residue MG A 1667
060
AI6
SOFTWARE
G A:324
binding site for residue MG A 1668
061
AI7
SOFTWARE
U A:1095 , C A:1096 , G A:1108
binding site for residue MG A 1669
062
AI8
SOFTWARE
C A:972
binding site for residue MG A 1670
063
AI9
SOFTWARE
G A:377
binding site for residue MG A 1671
064
AJ1
SOFTWARE
A A:964 , U A:1199
binding site for residue MG A 1672
065
AJ2
SOFTWARE
G A:1526
binding site for residue MG A 1673
066
AJ3
SOFTWARE
U A:437 , G A:438
binding site for residue MG A 1674
067
AJ4
SOFTWARE
A A:109 , G A:331
binding site for residue MG A 1675
068
AJ5
SOFTWARE
C A:314 , C A:328 , C A:330
binding site for residue MG A 1676
069
AJ6
SOFTWARE
C A:355
binding site for residue MG A 1678
070
AJ7
SOFTWARE
U A:359 , A A:360
binding site for residue MG A 1679
071
AJ8
SOFTWARE
G A:617 , A A:621
binding site for residue MG A 1680
072
AJ9
SOFTWARE
G A:587
binding site for residue MG A 1681
073
AK1
SOFTWARE
G A:661
binding site for residue MG A 1683
074
AK2
SOFTWARE
G A:945 , C A:1230
binding site for residue MG A 1684
075
AK3
SOFTWARE
G A:1224
binding site for residue MG A 1685
076
AK4
SOFTWARE
G A:506 , C A:508 , A A:509 , A A:510
binding site for residue MG A 1686
077
AK5
SOFTWARE
G A:1300 , G A:1334
binding site for residue MG A 1687
078
AK6
SOFTWARE
A A:329 , G A:333
binding site for residue MG A 1688
079
AK7
SOFTWARE
G A:858 , C A:868 , G A:869
binding site for residue MG A 1689
080
AK8
SOFTWARE
A A:860
binding site for residue MG A 1690
081
AK9
SOFTWARE
C A:569
binding site for residue MG A 1692
082
AL1
SOFTWARE
A A:53
binding site for residue MG A 1694
083
AL2
SOFTWARE
G A:64 , A A:383
binding site for residue MG A 1695
084
AL3
SOFTWARE
A A:116 , G A:117 , A A:288 , G A:289
binding site for residue MG A 1696
085
AL4
SOFTWARE
G A:588
binding site for residue MG A 1698
086
AL5
SOFTWARE
G A:1068 , G A:1094
binding site for residue MG A 1700
087
AL6
SOFTWARE
C A:934
binding site for residue MG A 1701
088
AL7
SOFTWARE
A A:547 , G A:548
binding site for residue MG A 1702
089
AL8
SOFTWARE
G A:396
binding site for residue MG A 1703
090
AL9
SOFTWARE
G A:46 , C A:366 , G A:394
binding site for residue MG A 1704
091
AM1
SOFTWARE
G A:126
binding site for residue MG A 1707
092
AM2
SOFTWARE
A A:608
binding site for residue MG A 1709
093
AM3
SOFTWARE
A A:1499 , A A:1500 , G A:1504 , G A:1505
binding site for residue MG A 1710
094
AM4
SOFTWARE
A A:1110
binding site for residue MG A 1711
095
AM5
SOFTWARE
A A:937 , A A:938
binding site for residue MG A 1712
096
AM6
SOFTWARE
G A:576 , C A:578 , U A:820
binding site for residue MG A 1713
097
AM7
SOFTWARE
G A:1077 , G A:1079
binding site for residue MG A 1714
098
AM8
SOFTWARE
A A:780
binding site for residue MG A 1715
099
AM9
SOFTWARE
A A:583
binding site for residue MG A 1716
100
AN1
SOFTWARE
U A:239
binding site for residue MG A 1718
101
AN2
SOFTWARE
G A:830 , U A:831
binding site for residue MG A 1719
102
AN3
SOFTWARE
G A:299 , G A:558
binding site for residue MG A 1720
103
AN4
SOFTWARE
A A:759 , G A:760
binding site for residue MG A 1722
104
AN5
SOFTWARE
G A:64
binding site for residue MG A 1724
105
AN6
SOFTWARE
U A:863
binding site for residue MG A 1725
106
AN7
SOFTWARE
CYS D:9 , CYS D:12 , CYS D:26 , CYS D:31
binding site for residue ZN D 300
107
AN8
SOFTWARE
U A:1049 , LYS N:4
binding site for residue MG N 1601
108
AN9
SOFTWARE
CYS N:24 , CYS N:27 , CYS N:40 , CYS N:43
binding site for residue ZN N 1602
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Chain E
Chain F
Chain G
Chain H
Chain I
Chain J
Chain K
Chain L
Chain M
Chain N
Chain O
Chain P
Chain Q
Chain R
Chain S
Chain T
Chain V
Chain W
Chain X
Chain Y
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (1.1 MB)
Header - Asym.Unit
Biol.Unit 1 (1.1 MB)
Header - Biol.Unit 1
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
5LMN
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help