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5LM8
Asym. Unit
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Asym.Unit (112 KB)
Biol.Unit 1 (105 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF A LACCASE-LIKE MULTICOPPER OXIDASE MCOG FROM FROM ASPERGILLUS NIGER
Authors
:
M. Ferraroni, F. Briganti, J. A. Tamayo-Ramos, W. J. H. Van Berkel, A. H
Date
:
29 Jul 16 (Deposition) - 03 May 17 (Release) - 17 May 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.70
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Ferraroni, A. H. Westphal, M. Borsari, J. A. Tamayo-Ramos, F. Briganti, L. H. De Graaff, W. J. H. Van Berkel
Structure And Function Of Aspergillus Niger Laccase Mcog
Biocatalysis 2017
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Hetero Components
(5, 18)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
2a: COPPER (II) ION (CUa)
2b: COPPER (II) ION (CUb)
2c: COPPER (II) ION (CUc)
2d: COPPER (II) ION (CUd)
3a: ALPHA-D-MANNOSE (MANa)
3b: ALPHA-D-MANNOSE (MANb)
4a: N-ACETYL-D-GLUCOSAMINE (NAGa)
4b: N-ACETYL-D-GLUCOSAMINE (NAGb)
4c: N-ACETYL-D-GLUCOSAMINE (NAGc)
4d: N-ACETYL-D-GLUCOSAMINE (NAGd)
4e: N-ACETYL-D-GLUCOSAMINE (NAGe)
4f: N-ACETYL-D-GLUCOSAMINE (NAGf)
4g: N-ACETYL-D-GLUCOSAMINE (NAGg)
4h: N-ACETYL-D-GLUCOSAMINE (NAGh)
4i: N-ACETYL-D-GLUCOSAMINE (NAGi)
5a: PEROXIDE ION (PERa)
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Label:
No.
Name
Count
Type
Full Name
1
BMA
2
Ligand/Ion
BETA-D-MANNOSE
2
CU
4
Ligand/Ion
COPPER (II) ION
3
MAN
2
Ligand/Ion
ALPHA-D-MANNOSE
4
NAG
9
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
5
PER
1
Ligand/Ion
PEROXIDE ION
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Sites
(11, 11)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:110 , HIS A:152 , HIS A:517 , PER A:618
binding site for residue CU A 601
02
AC2
SOFTWARE
HIS A:154 , HIS A:451 , HIS A:453 , HIS A:515 , PER A:618
binding site for residue CU A 602
03
AC3
SOFTWARE
HIS A:108 , HIS A:110 , HIS A:451 , HIS A:453 , PER A:618 , HOH A:849
binding site for residue CU A 603
04
AC4
SOFTWARE
HIS A:448 , CYS A:516 , ILE A:518 , HIS A:521
binding site for residue CU A 604
05
AC5
SOFTWARE
ASN A:134 , HOH A:729 , HOH A:1144
binding site for residue NAG A 617
06
AC6
SOFTWARE
HIS A:108 , HIS A:110 , HIS A:152 , HIS A:154 , HIS A:451 , HIS A:453 , HIS A:515 , HIS A:517 , CU A:601 , CU A:602 , CU A:603 , HOH A:833
binding site for residue PER A 618
07
AC7
SOFTWARE
ASN A:60 , LEU A:73 , GLU A:101 , ASN A:102 , ASN A:103 , NAG A:608 , HOH A:701 , HOH A:711 , HOH A:730 , HOH A:874 , HOH A:927 , HOH A:937
binding site for Poly-Saccharide residues NAG A 605 through NAG A 606 bound to ASN A 60
08
AC8
SOFTWARE
THR A:83 , LEU A:181 , MET A:183 , ASN A:216 , NAG A:615 , HOH A:799 , HOH A:813 , HOH A:886 , HOH A:951
binding site for Mono-Saccharide NAG A 614 bound to ASN A 216
09
AC9
SOFTWARE
ASN A:400 , ARG A:567 , LEU A:569 , HOH A:792 , HOH A:839 , HOH A:843 , HOH A:961
binding site for Poly-Saccharide residues NAG A 612 through NAG A 613 bound to ASN A 400
10
AD1
SOFTWARE
ASN A:102 , ASN A:103 , SER A:156 , THR A:193 , ASP A:195 , GLU A:196 , TYR A:562 , GLU A:574 , NAG A:605 , HOH A:738 , HOH A:780 , HOH A:794 , HOH A:823 , HOH A:846 , HOH A:913 , HOH A:935 , HOH A:950 , HOH A:965 , HOH A:979 , HOH A:989 , HOH A:1075 , HOH A:1121
binding site for Poly-Saccharide residues BMA A 607 through MAN A 611
11
AD2
SOFTWARE
PRO A:82 , THR A:83 , GLU A:85 , ASN A:102 , ASN A:103 , SER A:156 , LEU A:168 , GLY A:182 , THR A:193 , ASP A:195 , GLU A:196 , TYR A:562 , GLU A:574 , NAG A:605 , MAN A:611 , NAG A:614 , HOH A:723 , HOH A:738 , HOH A:754 , HOH A:780 , HOH A:794 , HOH A:823 , HOH A:846 , HOH A:878 , HOH A:892 , HOH A:913 , HOH A:935 , HOH A:950 , HOH A:963 , HOH A:965 , HOH A:976 , HOH A:979 , HOH A:989 , HOH A:1019 , HOH A:1052 , HOH A:1075 , HOH A:1121
binding site for Poly-Saccharide residues NAG A 615 through BMA A 616
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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SCOP Domains
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CATH Domains
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Pfam Domains
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Chain A
Asymmetric Unit 1
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