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5LLS
Asym. Unit
Info
Asym.Unit (1.0 MB)
Biol.Unit 1 (517 KB)
Biol.Unit 2 (519 KB)
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(1)
Title
:
PORCINE DIPEPTIDYL PEPTIDASE IV IN COMPLEX WITH 8-(3-AMINOPIPERIDIN-1-YL)-7-[(2-BROMOPHENYL)METHYL]-1,3-DIMETHYL-2,3,6,7-TETRAHYDRO-1H-PURINE-2,6-DIONE
Authors
:
H. Nar, M. Blaesse
Date
:
28 Jul 16 (Deposition) - 14 Sep 16 (Release) - 14 Sep 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.41
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Peptidase, Inhibitor, Complex, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
G. Schnapp, T. Klein, Y. Hoevels, R. A. Bakker, H. Nar
Comparative Analysis Of Binding Kinetics And Thermodynamics Of Dipeptidyl Peptidase-4 Inhibitors And Their Relationship To Structure.
J. Med. Chem. V. 59 7466 2016
[
close entry info
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Hetero Components
(3, 45)
Info
All Hetero Components
1a: 8-[(3~{R})-3-AZANYLPIPERIDIN-1-YL]... (6Z8a)
1b: 8-[(3~{R})-3-AZANYLPIPERIDIN-1-YL]... (6Z8b)
1c: 8-[(3~{R})-3-AZANYLPIPERIDIN-1-YL]... (6Z8c)
1d: 8-[(3~{R})-3-AZANYLPIPERIDIN-1-YL]... (6Z8d)
1e: 8-[(3~{R})-3-AZANYLPIPERIDIN-1-YL]... (6Z8e)
1f: 8-[(3~{R})-3-AZANYLPIPERIDIN-1-YL]... (6Z8f)
1g: 8-[(3~{R})-3-AZANYLPIPERIDIN-1-YL]... (6Z8g)
1h: 8-[(3~{R})-3-AZANYLPIPERIDIN-1-YL]... (6Z8h)
2a: N-ACETYL-D-GLUCOSAMINE (NAGa)
2aa: N-ACETYL-D-GLUCOSAMINE (NAGaa)
2ab: N-ACETYL-D-GLUCOSAMINE (NAGab)
2ac: N-ACETYL-D-GLUCOSAMINE (NAGac)
2ad: N-ACETYL-D-GLUCOSAMINE (NAGad)
2ae: N-ACETYL-D-GLUCOSAMINE (NAGae)
2af: N-ACETYL-D-GLUCOSAMINE (NAGaf)
2ag: N-ACETYL-D-GLUCOSAMINE (NAGag)
2b: N-ACETYL-D-GLUCOSAMINE (NAGb)
2c: N-ACETYL-D-GLUCOSAMINE (NAGc)
2d: N-ACETYL-D-GLUCOSAMINE (NAGd)
2e: N-ACETYL-D-GLUCOSAMINE (NAGe)
2f: N-ACETYL-D-GLUCOSAMINE (NAGf)
2g: N-ACETYL-D-GLUCOSAMINE (NAGg)
2h: N-ACETYL-D-GLUCOSAMINE (NAGh)
2i: N-ACETYL-D-GLUCOSAMINE (NAGi)
2j: N-ACETYL-D-GLUCOSAMINE (NAGj)
2k: N-ACETYL-D-GLUCOSAMINE (NAGk)
2l: N-ACETYL-D-GLUCOSAMINE (NAGl)
2m: N-ACETYL-D-GLUCOSAMINE (NAGm)
2n: N-ACETYL-D-GLUCOSAMINE (NAGn)
2o: N-ACETYL-D-GLUCOSAMINE (NAGo)
2p: N-ACETYL-D-GLUCOSAMINE (NAGp)
2q: N-ACETYL-D-GLUCOSAMINE (NAGq)
2r: N-ACETYL-D-GLUCOSAMINE (NAGr)
2s: N-ACETYL-D-GLUCOSAMINE (NAGs)
2t: N-ACETYL-D-GLUCOSAMINE (NAGt)
2u: N-ACETYL-D-GLUCOSAMINE (NAGu)
2v: N-ACETYL-D-GLUCOSAMINE (NAGv)
2w: N-ACETYL-D-GLUCOSAMINE (NAGw)
2x: N-ACETYL-D-GLUCOSAMINE (NAGx)
2y: N-ACETYL-D-GLUCOSAMINE (NAGy)
2z: N-ACETYL-D-GLUCOSAMINE (NAGz)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
6Z8
8
Ligand/Ion
8-[(3~{R})-3-AZANYLPIPERIDIN-1-YL]-7-[(2-BROMOPHENYL)METHYL]-1,3-DIMETHYL-PURINE-2,6-DIONE
2
NAG
33
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
3
SO4
4
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(36, 36)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
20: AE2 (SOFTWARE)
21: AE3 (SOFTWARE)
22: AE4 (SOFTWARE)
23: AE5 (SOFTWARE)
24: AE6 (SOFTWARE)
25: AE7 (SOFTWARE)
26: AE8 (SOFTWARE)
27: AE9 (SOFTWARE)
28: AF1 (SOFTWARE)
29: AF2 (SOFTWARE)
30: AF3 (SOFTWARE)
31: AF4 (SOFTWARE)
32: AF5 (SOFTWARE)
33: AF6 (SOFTWARE)
34: AF7 (SOFTWARE)
35: AF8 (SOFTWARE)
36: AF9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG A:125 , GLU A:205 , GLU A:206 , TYR A:547 , TRP A:629 , SER A:630 , TYR A:631 , TYR A:662 , TYR A:666 , ASN A:710 , VAL A:711 , HIS A:740
binding site for residue 6Z8 A 809
02
AC2
SOFTWARE
ALA A:360 , GLU A:361 , HIS A:363 , ILE A:374 , GLY A:406 , ILE A:407 , HOH A:937 , HOH A:1008
binding site for residue SO4 A 810
03
AC3
SOFTWARE
TRP A:187 , ALA A:280 , SER A:281 , VAL A:282 , SER C:284 , 6Z8 C:810
binding site for residue 6Z8 A 811
04
AC4
SOFTWARE
ARG B:125 , GLU B:205 , GLU B:206 , TYR B:547 , TRP B:629 , SER B:630 , TYR B:631 , TYR B:662 , TYR B:666 , ASN B:710 , VAL B:711 , HIS B:740
binding site for residue 6Z8 B 809
05
AC5
SOFTWARE
GLU B:361 , HIS B:363 , ILE B:374 , GLY B:406 , ILE B:407 , HOH B:922 , HOH B:930
binding site for residue SO4 B 810
06
AC6
SOFTWARE
TRP B:187 , ALA B:280 , SER B:281 , VAL B:282 , LYS D:267 , PHE D:269 , SER D:284 , 6Z8 D:813
binding site for residue 6Z8 B 811
07
AC7
SOFTWARE
ARG C:125 , GLU C:205 , GLU C:206 , TYR C:547 , TRP C:629 , SER C:630 , TYR C:631 , TYR C:662 , TYR C:666 , ASN C:710 , VAL C:711 , HIS C:740
binding site for residue 6Z8 C 808
08
AC8
SOFTWARE
GLU C:361 , HIS C:363 , ILE C:374 , GLY C:406 , ILE C:407 , HOH C:926 , HOH C:958 , HOH C:1038
binding site for residue SO4 C 809
09
AC9
SOFTWARE
LYS A:267 , PHE A:269 , SER A:284 , 6Z8 A:811 , TRP C:187 , ALA C:280 , SER C:281 , VAL C:282
binding site for residue 6Z8 C 810
10
AD1
SOFTWARE
ARG D:125 , GLU D:205 , GLU D:206 , TYR D:547 , TRP D:629 , SER D:630 , TYR D:631 , TYR D:662 , TYR D:666 , ASN D:710 , VAL D:711 , HIS D:740 , HOH D:910
binding site for residue 6Z8 D 811
11
AD2
SOFTWARE
GLU D:361 , HIS D:363 , ILE D:374 , GLY D:406 , ILE D:407
binding site for residue SO4 D 812
12
AD3
SOFTWARE
PHE B:269 , SER B:284 , 6Z8 B:811 , TRP D:187 , ALA D:280 , SER D:281 , VAL D:282
binding site for residue 6Z8 D 813
13
AD4
SOFTWARE
ASN A:85
binding site for Mono-Saccharide NAG A 801 bound to ASN A 85
14
AD5
SOFTWARE
GLU A:73 , ASN A:75 , ASN A:92 , HIS A:520 , GLY A:521 , HOH A:1041
binding site for Mono-Saccharide NAG A 802 bound to ASN A 92
15
AD6
SOFTWARE
ILE A:194 , GLN A:227 , ASN A:229 , THR A:231 , GLU A:232 , LYS A:267 , HOH A:988
binding site for Poly-Saccharide residues NAG A 803 through NAG A 804 bound to ASN A 229
16
AD7
SOFTWARE
ASN A:279 , HOH A:977 , TYR C:285
binding site for Mono-Saccharide NAG A 805 bound to ASN A 279
17
AD8
SOFTWARE
THR A:144 , ALA A:319 , ASN A:321 , SER A:349 , ARG A:596 , ASP A:678
binding site for Mono-Saccharide NAG A 806 bound to ASN A 321
18
AD9
SOFTWARE
TYR A:100 , ARG A:597 , GLY A:599 , THR A:600 , TYR A:682 , ASN A:685 , ARG A:691 , HOH A:950
binding site for Poly-Saccharide residues NAG A 807 through NAG A 808 bound to ASN A 685
19
AE1
SOFTWARE
LEU B:78 , ASN B:85
binding site for Mono-Saccharide NAG B 801 bound to ASN B 85
20
AE2
SOFTWARE
GLU B:73 , ASN B:74 , ASN B:75 , ASN B:92 , ILE B:348 , THR B:350 , NAG B:806 , HOH B:1014
binding site for Poly-Saccharide residues NAG B 802 through NAG B 803 bound to ASN B 92
21
AE3
SOFTWARE
GLN B:227 , ASN B:229 , THR B:231 , GLU B:232 , LYS B:267 , HOH B:988 , HOH B:1060
binding site for Mono-Saccharide NAG B 804 bound to ASN B 229
22
AE4
SOFTWARE
ASN B:279 , VAL D:288
binding site for Mono-Saccharide NAG B 805 bound to ASN B 279
23
AE5
SOFTWARE
ASN B:321 , SER B:349 , THR B:350 , NAG B:802 , HOH B:937
binding site for Mono-Saccharide NAG B 806 bound to ASN B 321
24
AE6
SOFTWARE
ARG B:597 , GLY B:599 , THR B:600 , TYR B:682 , ASN B:685 , ARG B:691 , HOH B:929 , HOH B:1036
binding site for Poly-Saccharide residues NAG B 807 through NAG B 808 bound to ASN B 685
25
AE7
SOFTWARE
HOH B:1064 , LEU C:78 , ASN C:85 , SER C:87 , HOH C:947
binding site for Mono-Saccharide NAG C 801 bound to ASN C 85
26
AE8
SOFTWARE
LYS B:423 , GLU C:73 , ASN C:75 , ASN C:92
binding site for Mono-Saccharide NAG C 802 bound to ASN C 92
27
AE9
SOFTWARE
THR C:188 , ILE C:194 , ASN C:229 , THR C:231 , GLU C:232 , LYS C:267 , HOH C:951 , HOH C:993
binding site for Mono-Saccharide NAG C 803 bound to ASN C 229
28
AF1
SOFTWARE
VAL A:288 , ASN C:279 , HOH C:949 , HOH C:956
binding site for Mono-Saccharide NAG C 804 bound to ASN C 279
29
AF2
SOFTWARE
ASN C:321
binding site for Mono-Saccharide NAG C 805 bound to ASN C 321
30
AF3
SOFTWARE
ARG C:597 , GLY C:599 , THR C:600 , TYR C:682 , ASN C:685 , ARG C:691 , HOH C:920 , HOH C:938 , HOH C:965
binding site for Poly-Saccharide residues NAG C 806 through NAG C 807 bound to ASN C 685
31
AF4
SOFTWARE
ASN D:85 , SER D:87
binding site for Mono-Saccharide NAG D 801 bound to ASN D 85
32
AF5
SOFTWARE
GLU D:73 , ASN D:75 , ASN D:92 , THR D:350 , HOH D:998
binding site for Poly-Saccharide residues NAG D 802 through NAG D 803 bound to ASN D 92
33
AF6
SOFTWARE
ILE D:194 , GLN D:227 , ASN D:229 , THR D:231 , GLU D:232 , LYS D:267
binding site for Poly-Saccharide residues NAG D 804 through NAG D 805 bound to ASN D 229
34
AF7
SOFTWARE
VAL B:288 , PRO D:278 , ASN D:279 , HOH D:1006
binding site for Mono-Saccharide NAG D 806 bound to ASN D 279
35
AF8
SOFTWARE
ASN D:321 , SER D:349 , ARG D:596 , GLU D:677 , ASP D:678 , HOH D:933
binding site for Poly-Saccharide residues NAG D 807 through NAG D 808 bound to ASN D 321
36
AF9
SOFTWARE
ARG D:597 , GLY D:599 , THR D:600 , GLU D:604 , TYR D:682 , ASN D:685 , ARG D:691 , HOH D:912 , HOH D:917 , HOH D:982
binding site for Poly-Saccharide residues NAG D 809 through NAG D 810 bound to ASN D 685
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(0, 0)
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Asym.Unit (1.0 MB)
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Biol.Unit 1 (517 KB)
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