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5LJ5
Asym. Unit
Info
Asym.Unit (1.7 MB)
Biol.Unit 1, α-C (1.7 MB)
Biol.Unit 1 (1.7 MB)
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(1)
Title
:
OVERALL STRUCTURE OF THE YEAST SPLICEOSOME IMMEDIATELY AFTER BRANCHING.
Authors
:
W. P. Galej, M. F. Wilkinson, S. M. Fica, C. Oubridge, A. J. Newman, K. Nag
Date
:
17 Jul 16 (Deposition) - 31 Aug 16 (Release) - 12 Oct 16 (Revision)
Method
:
ELECTRON MICROSCOPY
Resolution
:
3.80
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,Y,Z,b,d,e,f,g,h,j,k,l,m,n,p,q,r,s,t,u,v,w,x
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,Y,Z,b,d,e,f,g,h,j,k,l,m,n,p,q,r,s,t,u,v,w,x (1x)
Keywords
:
Spliceosome, Snrnp, Pre-Mrna Splicing, Trans-Esterification, Lariat Intermediate, Complex C, Splicing
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
W. P. Galej, M. E. Wilkinson, S. M. Fica, C. Oubridge, A. J. Newman, K. Nagai
Cryo-Em Structure Of The Spliceosome Immediately After Branching.
Nature V. 537 197 2016
[
close entry info
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Hetero Components
(4, 142)
Info
All Hetero Components
1a: GUANOSINE-5'-TRIPHOSPHATE (GTPa)
2a: MAGNESIUM ION (MGa)
2b: MAGNESIUM ION (MGb)
3a: (UNKa)
3aa: (UNKaa)
3ab: (UNKab)
3ac: (UNKac)
3ad: (UNKad)
3ae: (UNKae)
3af: (UNKaf)
3ag: (UNKag)
3ah: (UNKah)
3ai: (UNKai)
3aj: (UNKaj)
3ak: (UNKak)
3al: (UNKal)
3am: (UNKam)
3an: (UNKan)
3ao: (UNKao)
3ap: (UNKap)
3aq: (UNKaq)
3ar: (UNKar)
3as: (UNKas)
3at: (UNKat)
3au: (UNKau)
3av: (UNKav)
3aw: (UNKaw)
3ax: (UNKax)
3ay: (UNKay)
3az: (UNKaz)
3b: (UNKb)
3ba: (UNKba)
3bb: (UNKbb)
3bc: (UNKbc)
3bd: (UNKbd)
3be: (UNKbe)
3bf: (UNKbf)
3bg: (UNKbg)
3bh: (UNKbh)
3bi: (UNKbi)
3bj: (UNKbj)
3bk: (UNKbk)
3bl: (UNKbl)
3bm: (UNKbm)
3bn: (UNKbn)
3bo: (UNKbo)
3bp: (UNKbp)
3bq: (UNKbq)
3br: (UNKbr)
3bs: (UNKbs)
3bt: (UNKbt)
3bu: (UNKbu)
3bv: (UNKbv)
3bw: (UNKbw)
3bx: (UNKbx)
3by: (UNKby)
3bz: (UNKbz)
3c: (UNKc)
3ca: (UNKca)
3cb: (UNKcb)
3cc: (UNKcc)
3cd: (UNKcd)
3ce: (UNKce)
3cf: (UNKcf)
3cg: (UNKcg)
3ch: (UNKch)
3ci: (UNKci)
3cj: (UNKcj)
3ck: (UNKck)
3cl: (UNKcl)
3cm: (UNKcm)
3cn: (UNKcn)
3co: (UNKco)
3cp: (UNKcp)
3cq: (UNKcq)
3cr: (UNKcr)
3cs: (UNKcs)
3ct: (UNKct)
3cu: (UNKcu)
3cv: (UNKcv)
3cw: (UNKcw)
3cx: (UNKcx)
3cy: (UNKcy)
3cz: (UNKcz)
3d: (UNKd)
3da: (UNKda)
3db: (UNKdb)
3dc: (UNKdc)
3dd: (UNKdd)
3de: (UNKde)
3df: (UNKdf)
3dg: (UNKdg)
3dh: (UNKdh)
3di: (UNKdi)
3dj: (UNKdj)
3dk: (UNKdk)
3dl: (UNKdl)
3dm: (UNKdm)
3dn: (UNKdn)
3do: (UNKdo)
3dp: (UNKdp)
3dq: (UNKdq)
3dr: (UNKdr)
3ds: (UNKds)
3dt: (UNKdt)
3du: (UNKdu)
3dv: (UNKdv)
3dw: (UNKdw)
3dx: (UNKdx)
3dy: (UNKdy)
3dz: (UNKdz)
3e: (UNKe)
3ea: (UNKea)
3eb: (UNKeb)
3f: (UNKf)
3g: (UNKg)
3h: (UNKh)
3i: (UNKi)
3j: (UNKj)
3k: (UNKk)
3l: (UNKl)
3m: (UNKm)
3n: (UNKn)
3o: (UNKo)
3p: (UNKp)
3q: (UNKq)
3r: (UNKr)
3s: (UNKs)
3t: (UNKt)
3u: (UNKu)
3v: (UNKv)
3w: (UNKw)
3x: (UNKx)
3y: (UNKy)
3z: (UNKz)
4a: ZINC ION (ZNa)
4b: ZINC ION (ZNb)
4c: ZINC ION (ZNc)
4d: ZINC ION (ZNd)
4e: ZINC ION (ZNe)
4f: ZINC ION (ZNf)
4g: ZINC ION (ZNg)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GTP
1
Ligand/Ion
GUANOSINE-5'-TRIPHOSPHATE
2
MG
2
Ligand/Ion
MAGNESIUM ION
3
UNK
132
Mod. Amino Acid
4
ZN
7
Ligand/Ion
ZINC ION
[
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Sites
(15, 15)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
G E:-1 , G V:60 , G V:78
binding site for residue MG E 1001
02
AC2
SOFTWARE
G V:60 , U V:80
binding site for residue MG V 201
03
AC3
SOFTWARE
CYS D:51 , CYS D:54 , CYS D:88 , CYS D:91
binding site for residue ZN D 1001
04
AC4
SOFTWARE
LEU C:142 , HIS C:143 , GLY C:145 , LYS C:146 , THR C:147 , SER C:148 , ARG C:176 , LEU C:189 , SER C:190 , ALA C:215 , GLY C:217 , ASN C:268 , LYS C:269 , ARG C:272 , SER C:315 , THR C:316 , LYS C:317
binding site for residue GTP C 1101
05
AC5
SOFTWARE
CYS L:104 , CYS L:105 , CYS L:108 , CYS L:148 , ZN L:1001
binding site for residue ZN L 1000
06
AC6
SOFTWARE
CYS L:104 , CYS L:122 , CYS L:150 , CYS L:153 , ZN L:1000 , ZN L:1002
binding site for residue ZN L 1001
07
AC7
SOFTWARE
CYS L:108 , CYS L:120 , CYS L:122 , CYS L:145 , CYS L:150 , ZN L:1001
binding site for residue ZN L 1002
08
AC8
SOFTWARE
CYS M:73 , CYS M:81 , CYS M:87 , HIS M:91 , A V:35
binding site for residue ZN M 1000
09
AC9
SOFTWARE
CYS N:34 , CYS N:37 , CYS N:61 , CYS N:64
binding site for residue ZN N 401
10
AD1
SOFTWARE
CYS N:13 , CYS N:16 , CYS N:71 , CYS N:74
binding site for residue ZN N 402
11
AD2
SOFTWARE
SER G:22 , ALA G:23 , LYS v:275 , LEU v:277 , ARG v:278
binding site for Ligand VAL v 276 bound to SER G 22
12
AD3
SOFTWARE
THR Q:403 , GLN Q:404 , ILE Q:472 , GLU Q:474 , ALA Q:475 , ILE Q:503
binding site for Ligand ASP Q 473 bound to THR Q 403
13
AD4
SOFTWARE
ILE Q:433 , ARG Q:434 , GLU Q:436 , TYR Q:869 , SER Q:871 , LEU Q:872 , ARG Q:874 , ALA Q:875 , ARG Q:876 , ASP Q:877 , ILE Q:878
binding site for Di-peptide PHE Q 435 and VAL Q 873
14
AD5
SOFTWARE
ILE Q:433 , ARG Q:434 , GLU Q:436 , LEU Q:872 , VAL Q:873 , ARG Q:874 , ALA Q:875 , ARG Q:876 , ILE Q:878 , ARG Q:879 , ASP Q:880 , GLN Q:881
binding site for Di-peptide PHE Q 435 and ASP Q 877
15
AD6
SOFTWARE
ILE Q:433 , ARG Q:434 , GLU Q:436 , TYR Q:869 , SER Q:871 , LEU Q:872 , ARG Q:874 , ALA Q:875 , ARG Q:876 , ASP Q:877 , ILE Q:878
binding site for Di-peptide PHE Q 435 and VAL Q 873
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Chain g
Chain h
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Asymmetric Unit 1
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Asym.Unit (1.7 MB)
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