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5LIA
Asym. Unit
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Asym.Unit (287 KB)
Biol.Unit 1 (278 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF MURINE AUTOTAXIN IN COMPLEX WITH A SMALL MOLECULE INHIBITOR
Authors
:
A. P. Turnbull, P. Shah, A. Cheasty, T. Raynham, L. Pang, P. Owen
Date
:
14 Jul 16 (Deposition) - 09 Nov 16 (Release) - 28 Dec 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.92
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Lysophospholipase D, Autotaxin, Enpp2, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. Shah, A. Cheasty, C. Foxton, T. Raynham, M. Farooq, I. F. Gutierrez, A. Lejeune, M. Pritchard, A. Turnbull, L. Pang, P. Owen, S. Boyd, A. Stowell, A. Jordan, N. M. Hamilton, J. R. Hitchin, M. Stockley, E. Macdonald, M. J. Quesada, E. Trivier, J. Skeete, H. Ovaa, W. H. Moolenaar, H. Ryder
Discovery Of Potent Inhibitors Of The Lysophospholipase Autotaxin.
Bioorg. Med. Chem. Lett. V. 26 5403 2016
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Hetero Components
(10, 17)
Info
All Hetero Components
01a: ~{N}-[(1~{S})-1-(4-CHLOROPHENYL)ET... (6XNa)
02a: BETA-D-MANNOSE (BMAa)
03a: CALCIUM ION (CAa)
04a: 1,2-ETHANEDIOL (EDOa)
04b: 1,2-ETHANEDIOL (EDOb)
04c: 1,2-ETHANEDIOL (EDOc)
05a: POTASSIUM ION (Ka)
06a: ALPHA-D-MANNOSE (MANa)
06b: ALPHA-D-MANNOSE (MANb)
06c: ALPHA-D-MANNOSE (MANc)
08a: N-ACETYL-D-GLUCOSAMINE (NAGa)
08b: N-ACETYL-D-GLUCOSAMINE (NAGb)
08c: N-ACETYL-D-GLUCOSAMINE (NAGc)
07a: SODIUM ION (NAa)
09a: SULFATE ION (SO4a)
10a: ZINC ION (ZNa)
10b: ZINC ION (ZNb)
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No.
Name
Count
Type
Full Name
1
6XN
1
Ligand/Ion
~{N}-[(1~{S})-1-(4-CHLOROPHENYL)ETHYL]-3-[3-[[4-(TRIFLUOROMETHYLOXY)PHENYL]METHYL]IMIDAZO[4,5-B]PYRIDIN-2-YL]PROPANAMIDE
2
BMA
1
Ligand/Ion
BETA-D-MANNOSE
3
CA
1
Ligand/Ion
CALCIUM ION
4
EDO
3
Ligand/Ion
1,2-ETHANEDIOL
5
K
1
Ligand/Ion
POTASSIUM ION
6
MAN
3
Ligand/Ion
ALPHA-D-MANNOSE
7
NA
1
Ligand/Ion
SODIUM ION
8
NAG
3
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
9
SO4
1
Ligand/Ion
SULFATE ION
10
ZN
2
Ligand/Ion
ZINC ION
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ILE A:167 , SER A:169 , LEU A:213 , LEU A:216 , ALA A:217 , LYS A:248 , PHE A:249 , TRP A:254 , PHE A:273 , PHE A:274 , TRP A:275 , TYR A:306 , HOH A:1296
binding site for residue 6XN A 908
02
AC2
SOFTWARE
ASP A:171 , THR A:209 , ASP A:311 , ASP A:358 , HIS A:359 , SO4 A:911
binding site for residue ZN A 909
03
AC3
SOFTWARE
ASP A:311 , HIS A:315 , HIS A:474 , SO4 A:911
binding site for residue ZN A 910
04
AC4
SOFTWARE
ASP A:171 , THR A:209 , ASN A:230 , LEU A:243 , ASP A:311 , HIS A:315 , HIS A:359 , HIS A:474 , LYS A:579 , ZN A:909 , ZN A:910 , HOH A:1003
binding site for residue SO4 A 911
05
AC5
SOFTWARE
ASP A:735 , ASN A:737 , ASN A:739 , LEU A:741 , ASP A:743 , HOH A:1106
binding site for residue CA A 912
06
AC6
SOFTWARE
ASN A:797 , SER A:800 , SER A:803 , HOH A:1182 , HOH A:1368
binding site for residue NA A 913
07
AC7
SOFTWARE
TYR A:665 , ASP A:668 , MET A:671 , HOH A:1312
binding site for residue K A 914
08
AC8
SOFTWARE
PHE A:704 , PRO A:792 , ARG A:794 , ASN A:797 , HOH A:1063
binding site for residue EDO A 915
09
AC9
SOFTWARE
GLY A:226 , ASN A:437 , ARG A:439 , MAN A:906 , HOH A:1048
binding site for residue EDO A 916
10
AD1
SOFTWARE
HIS A:251 , PHE A:274
binding site for residue EDO A 917
11
AD2
SOFTWARE
LEU A:376 , THR A:377 , ASN A:410
binding site for Mono-Saccharide NAG A 901 bound to ASN A 410
12
AD3
SOFTWARE
LEU A:220 , GLU A:223 , SER A:224 , HIS A:225 , GLY A:255 , ASN A:436 , ASN A:437 , PRO A:522 , ASN A:524 , LEU A:741 , HIS A:827 , EDO A:916 , HOH A:1034 , HOH A:1048 , HOH A:1064 , HOH A:1068 , HOH A:1094 , HOH A:1112 , HOH A:1118 , HOH A:1167 , HOH A:1227
binding site for Poly-Saccharide residues NAG A 902 through MAN A 907 bound to ASN A 524
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SAPs(SNPs)/Variants
(0, 0)
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Exons
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SCOP Domains
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Chain A
Asymmetric Unit 1
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Asym.Unit (287 KB)
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