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5LHD
Biol. Unit 1
Info
Asym.Unit (1.3 MB)
Biol.Unit 1 (332 KB)
Biol.Unit 2 (329 KB)
Biol.Unit 3 (336 KB)
Biol.Unit 4 (333 KB)
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(1)
Title
:
STRUCTURE OF GLYCOSYLATED HUMAN AMINOPEPTIDASE N
Authors
:
R. Recacha, G. Mudgal, C. Santiago, J. M. Casasnovas
Date
:
11 Jul 16 (Deposition) - 05 Apr 17 (Release) - 19 Apr 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Human Aminopeptidase N, Cd13, Metalloprotease, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. Santiago, G. Mudgal, J. Reguera, R. Recacha, S. Albrecht, L. Enjuanes, J. M. Casasnovas
Allosteric Inhibition Of Aminopeptidase N Functions Related To Tumor Growth And Virus Infection.
Sci Rep V. 7 46045 2017
[
close entry info
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Hetero Components
(3, 39)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1aa: BETA-D-MANNOSE (BMAaa)
1ab: BETA-D-MANNOSE (BMAab)
1ac: BETA-D-MANNOSE (BMAac)
1ad: BETA-D-MANNOSE (BMAad)
1ae: BETA-D-MANNOSE (BMAae)
1af: BETA-D-MANNOSE (BMAaf)
1ag: BETA-D-MANNOSE (BMAag)
1ah: BETA-D-MANNOSE (BMAah)
1ai: BETA-D-MANNOSE (BMAai)
1aj: BETA-D-MANNOSE (BMAaj)
1ak: BETA-D-MANNOSE (BMAak)
1b: BETA-D-MANNOSE (BMAb)
1c: BETA-D-MANNOSE (BMAc)
1d: BETA-D-MANNOSE (BMAd)
1e: BETA-D-MANNOSE (BMAe)
1f: BETA-D-MANNOSE (BMAf)
1g: BETA-D-MANNOSE (BMAg)
1h: BETA-D-MANNOSE (BMAh)
1i: BETA-D-MANNOSE (BMAi)
1j: BETA-D-MANNOSE (BMAj)
1k: BETA-D-MANNOSE (BMAk)
1l: BETA-D-MANNOSE (BMAl)
1m: BETA-D-MANNOSE (BMAm)
1n: BETA-D-MANNOSE (BMAn)
1o: BETA-D-MANNOSE (BMAo)
1p: BETA-D-MANNOSE (BMAp)
1q: BETA-D-MANNOSE (BMAq)
1r: BETA-D-MANNOSE (BMAr)
1s: BETA-D-MANNOSE (BMAs)
1t: BETA-D-MANNOSE (BMAt)
1u: BETA-D-MANNOSE (BMAu)
1v: BETA-D-MANNOSE (BMAv)
1w: BETA-D-MANNOSE (BMAw)
1x: BETA-D-MANNOSE (BMAx)
1y: BETA-D-MANNOSE (BMAy)
1z: BETA-D-MANNOSE (BMAz)
2a: 1,2-ETHANEDIOL (EDOa)
2aa: 1,2-ETHANEDIOL (EDOaa)
2ab: 1,2-ETHANEDIOL (EDOab)
2ac: 1,2-ETHANEDIOL (EDOac)
2ad: 1,2-ETHANEDIOL (EDOad)
2ae: 1,2-ETHANEDIOL (EDOae)
2af: 1,2-ETHANEDIOL (EDOaf)
2ag: 1,2-ETHANEDIOL (EDOag)
2ah: 1,2-ETHANEDIOL (EDOah)
2ai: 1,2-ETHANEDIOL (EDOai)
2aj: 1,2-ETHANEDIOL (EDOaj)
2ak: 1,2-ETHANEDIOL (EDOak)
2al: 1,2-ETHANEDIOL (EDOal)
2am: 1,2-ETHANEDIOL (EDOam)
2an: 1,2-ETHANEDIOL (EDOan)
2ao: 1,2-ETHANEDIOL (EDOao)
2ap: 1,2-ETHANEDIOL (EDOap)
2aq: 1,2-ETHANEDIOL (EDOaq)
2ar: 1,2-ETHANEDIOL (EDOar)
2as: 1,2-ETHANEDIOL (EDOas)
2at: 1,2-ETHANEDIOL (EDOat)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
2e: 1,2-ETHANEDIOL (EDOe)
2f: 1,2-ETHANEDIOL (EDOf)
2g: 1,2-ETHANEDIOL (EDOg)
2h: 1,2-ETHANEDIOL (EDOh)
2i: 1,2-ETHANEDIOL (EDOi)
2j: 1,2-ETHANEDIOL (EDOj)
2k: 1,2-ETHANEDIOL (EDOk)
2l: 1,2-ETHANEDIOL (EDOl)
2m: 1,2-ETHANEDIOL (EDOm)
2n: 1,2-ETHANEDIOL (EDOn)
2o: 1,2-ETHANEDIOL (EDOo)
2p: 1,2-ETHANEDIOL (EDOp)
2q: 1,2-ETHANEDIOL (EDOq)
2r: 1,2-ETHANEDIOL (EDOr)
2s: 1,2-ETHANEDIOL (EDOs)
2t: 1,2-ETHANEDIOL (EDOt)
2u: 1,2-ETHANEDIOL (EDOu)
2v: 1,2-ETHANEDIOL (EDOv)
2w: 1,2-ETHANEDIOL (EDOw)
2x: 1,2-ETHANEDIOL (EDOx)
2y: 1,2-ETHANEDIOL (EDOy)
2z: 1,2-ETHANEDIOL (EDOz)
3a: N-ACETYL-D-GLUCOSAMINE (NAGa)
3aa: N-ACETYL-D-GLUCOSAMINE (NAGaa)
3ab: N-ACETYL-D-GLUCOSAMINE (NAGab)
3ac: N-ACETYL-D-GLUCOSAMINE (NAGac)
3ad: N-ACETYL-D-GLUCOSAMINE (NAGad)
3ae: N-ACETYL-D-GLUCOSAMINE (NAGae)
3af: N-ACETYL-D-GLUCOSAMINE (NAGaf)
3ag: N-ACETYL-D-GLUCOSAMINE (NAGag)
3ah: N-ACETYL-D-GLUCOSAMINE (NAGah)
3ai: N-ACETYL-D-GLUCOSAMINE (NAGai)
3aj: N-ACETYL-D-GLUCOSAMINE (NAGaj)
3ak: N-ACETYL-D-GLUCOSAMINE (NAGak)
3al: N-ACETYL-D-GLUCOSAMINE (NAGal)
3am: N-ACETYL-D-GLUCOSAMINE (NAGam)
3an: N-ACETYL-D-GLUCOSAMINE (NAGan)
3ao: N-ACETYL-D-GLUCOSAMINE (NAGao)
3ap: N-ACETYL-D-GLUCOSAMINE (NAGap)
3aq: N-ACETYL-D-GLUCOSAMINE (NAGaq)
3ar: N-ACETYL-D-GLUCOSAMINE (NAGar)
3as: N-ACETYL-D-GLUCOSAMINE (NAGas)
3at: N-ACETYL-D-GLUCOSAMINE (NAGat)
3au: N-ACETYL-D-GLUCOSAMINE (NAGau)
3av: N-ACETYL-D-GLUCOSAMINE (NAGav)
3aw: N-ACETYL-D-GLUCOSAMINE (NAGaw)
3ax: N-ACETYL-D-GLUCOSAMINE (NAGax)
3ay: N-ACETYL-D-GLUCOSAMINE (NAGay)
3az: N-ACETYL-D-GLUCOSAMINE (NAGaz)
3b: N-ACETYL-D-GLUCOSAMINE (NAGb)
3ba: N-ACETYL-D-GLUCOSAMINE (NAGba)
3bb: N-ACETYL-D-GLUCOSAMINE (NAGbb)
3bc: N-ACETYL-D-GLUCOSAMINE (NAGbc)
3bd: N-ACETYL-D-GLUCOSAMINE (NAGbd)
3be: N-ACETYL-D-GLUCOSAMINE (NAGbe)
3bf: N-ACETYL-D-GLUCOSAMINE (NAGbf)
3bg: N-ACETYL-D-GLUCOSAMINE (NAGbg)
3bh: N-ACETYL-D-GLUCOSAMINE (NAGbh)
3bi: N-ACETYL-D-GLUCOSAMINE (NAGbi)
3bj: N-ACETYL-D-GLUCOSAMINE (NAGbj)
3bk: N-ACETYL-D-GLUCOSAMINE (NAGbk)
3bl: N-ACETYL-D-GLUCOSAMINE (NAGbl)
3c: N-ACETYL-D-GLUCOSAMINE (NAGc)
3d: N-ACETYL-D-GLUCOSAMINE (NAGd)
3e: N-ACETYL-D-GLUCOSAMINE (NAGe)
3f: N-ACETYL-D-GLUCOSAMINE (NAGf)
3g: N-ACETYL-D-GLUCOSAMINE (NAGg)
3h: N-ACETYL-D-GLUCOSAMINE (NAGh)
3i: N-ACETYL-D-GLUCOSAMINE (NAGi)
3j: N-ACETYL-D-GLUCOSAMINE (NAGj)
3k: N-ACETYL-D-GLUCOSAMINE (NAGk)
3l: N-ACETYL-D-GLUCOSAMINE (NAGl)
3m: N-ACETYL-D-GLUCOSAMINE (NAGm)
3n: N-ACETYL-D-GLUCOSAMINE (NAGn)
3o: N-ACETYL-D-GLUCOSAMINE (NAGo)
3p: N-ACETYL-D-GLUCOSAMINE (NAGp)
3q: N-ACETYL-D-GLUCOSAMINE (NAGq)
3r: N-ACETYL-D-GLUCOSAMINE (NAGr)
3s: N-ACETYL-D-GLUCOSAMINE (NAGs)
3t: N-ACETYL-D-GLUCOSAMINE (NAGt)
3u: N-ACETYL-D-GLUCOSAMINE (NAGu)
3v: N-ACETYL-D-GLUCOSAMINE (NAGv)
3w: N-ACETYL-D-GLUCOSAMINE (NAGw)
3x: N-ACETYL-D-GLUCOSAMINE (NAGx)
3y: N-ACETYL-D-GLUCOSAMINE (NAGy)
3z: N-ACETYL-D-GLUCOSAMINE (NAGz)
4a: ZINC ION (ZNa)
4b: ZINC ION (ZNb)
4c: ZINC ION (ZNc)
4d: ZINC ION (ZNd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
8
Ligand/Ion
BETA-D-MANNOSE
2
EDO
17
Ligand/Ion
1,2-ETHANEDIOL
3
NAG
14
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
4
ZN
-1
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(29, 29)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE9 (SOFTWARE)
20: AH6 (SOFTWARE)
21: AH7 (SOFTWARE)
22: AH8 (SOFTWARE)
23: AH9 (SOFTWARE)
24: AI1 (SOFTWARE)
25: AI2 (SOFTWARE)
26: AI3 (SOFTWARE)
27: AI4 (SOFTWARE)
28: AK1 (SOFTWARE)
29: AK6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:388 , HIS A:392 , GLU A:411 , HOH A:1137
binding site for residue ZN A 1023
02
AC2
SOFTWARE
SER A:758 , SER A:762 , THR A:795 , ASN A:799
binding site for residue EDO A 1024
03
AC3
SOFTWARE
ASP A:83 , THR A:112 , HOH A:1150
binding site for residue EDO A 1025
04
AC4
SOFTWARE
SER A:374 , SER A:376 , LYS A:379 , EDO A:1039
binding site for residue EDO A 1026
05
AC5
SOFTWARE
SER A:132 , VAL A:138 , ASP A:179 , SER A:180 , GLU A:181 , EDO A:1033 , HOH A:1130
binding site for residue EDO A 1027
06
AC6
SOFTWARE
ARG A:75 , GLU A:226 , PRO A:227 , ALA A:228 , MET A:229 , GLU A:402
binding site for residue EDO A 1028
07
AC7
SOFTWARE
PRO A:77 , THR A:79 , LEU A:80 , THR A:117 , VAL A:119 , ILE A:120 , ILE A:121
binding site for residue EDO A 1029
08
AC8
SOFTWARE
THR A:88 , LYS A:104 , GLY A:105 , SER A:106
binding site for residue EDO A 1030
09
AC9
SOFTWARE
ALA A:116 , SER A:169 , LEU A:170 , VAL A:171 , LYS A:172 , HOH A:1221
binding site for residue EDO A 1031
10
AD1
SOFTWARE
SER A:124 , LYS A:126 , LEU A:155 , HOH A:1120 , HOH A:1180
binding site for residue EDO A 1032
11
AD2
SOFTWARE
SER A:107 , THR A:108 , SER A:180 , EDO A:1027 , HOH A:1123
binding site for residue EDO A 1033
12
AD3
SOFTWARE
ALA A:214 , ALA A:215 , ASP A:216 , SER A:469
binding site for residue EDO A 1034
13
AD4
SOFTWARE
GLY A:253 , PRO A:254 , THR A:256 , VAL A:266 , GLU A:268
binding site for residue EDO A 1035
14
AD5
SOFTWARE
PRO A:337 , LEU A:338
binding site for residue EDO A 1036
15
AD6
SOFTWARE
VAL A:446 , SER A:451 , SER A:452 , ASP A:473 , ILE A:475
binding site for residue EDO A 1037
16
AD7
SOFTWARE
GLU A:523
binding site for residue EDO A 1038
17
AD8
SOFTWARE
LYS A:379 , TRP A:429 , GLU A:745 , GLN A:750 , EDO A:1026
binding site for residue EDO A 1039
18
AD9
SOFTWARE
TYR A:85 , SER A:107 , THR A:108 , VAL A:109 , MET A:178 , SER A:180 , PRO A:222
binding site for residue EDO A 1040
19
AE9
SOFTWARE
GLU A:115 , ARG B:542 , PHE B:580 , VAL B:583 , ILE B:603
binding site for residue EDO B 1030
20
AH6
SOFTWARE
LEU A:100 , ASN A:128 , GLU A:183 , GLY A:184 , HOH A:1199 , ASP D:288 , TYR D:289
binding site for Poly-Saccharide residues NAG A 1001 through BMA A 1004 bound to ASN A 128
21
AH7
SOFTWARE
SER A:84 , ARG A:86 , ARG A:110 , ASN A:234 , THR A:271 , ILE C:513
binding site for Poly-Saccharide residues NAG A 1005 through BMA A 1009 bound to ASN A 234
22
AH8
SOFTWARE
LYS A:241 , LEU A:243 , SER A:255 , PRO A:257 , ASN A:265
binding site for Poly-Saccharide residues NAG A 1010 through NAG A 1011 bound to ASN A 265
23
AH9
SOFTWARE
TYR A:316 , ASN A:319
binding site for Poly-Saccharide residues NAG A 1012 through BMA A 1014 bound to ASN A 319
24
AI1
SOFTWARE
ASN A:527
binding site for Mono-Saccharide NAG A 1015 bound to ASN A 527
25
AI2
SOFTWARE
ASP A:433 , ASN A:625 , ILE A:656
binding site for Poly-Saccharide residues NAG A 1016 through NAG A 1017 bound to ASN A 625
26
AI3
SOFTWARE
THR A:677 , ASN A:681 , GLN A:960 , TRP A:961 , HOH A:1196
binding site for Poly-Saccharide residues NAG A 1018 through BMA A 1021 bound to ASN A 681
27
AI4
SOFTWARE
GLU A:814 , ASN A:818
binding site for Mono-Saccharide NAG A 1022 bound to ASN A 818
28
AK1
SOFTWARE
GLU A:636 , ASP C:433 , ASN C:625 , VAL C:655 , ILE C:656
binding site for Poly-Saccharide residues NAG C 1120 through BMA C 1125 bound to ASN C 625
29
AK6
SOFTWARE
PRO A:95 , ASN A:96 , ASP A:97 , GLY A:99 , LYS D:241 , LEU D:243 , SER D:255 , ASN D:265 , HOH D:1122
binding site for Poly-Saccharide residues NAG D 1010 through BMA D 1012 bound to ASN D 265
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
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CATH Domains
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Pfam Domains
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Asym.Unit (1.3 MB)
Header - Asym.Unit
Biol.Unit 1 (332 KB)
Header - Biol.Unit 1
Biol.Unit 2 (329 KB)
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Biol.Unit 3 (336 KB)
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