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5LG6
Biol. Unit 1
Info
Asym.Unit (316 KB)
Biol.Unit 1 (156 KB)
Biol.Unit 2 (154 KB)
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(1)
Title
:
STRUCTURE OF THE DEGLYCOSYLATED PORCINE AMINOPEPTIDASE N ECTODOMAIN
Authors
:
C. Santiago, J. Reguera, G. Mudgal, J. M. Casasnovas
Date
:
06 Jul 16 (Deposition) - 12 Apr 17 (Release) - 19 Apr 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Cd13, Papn, Porcine Aminopeptidase N, Coronavirus, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. Santiago, G. Mudgal, J. Reguera, R. Recacha, S. Albrecht, L. Enjuanes, J. M. Casasnovas
Allosteric Inhibition Of Aminopeptidase N Functions Related To Tumor Growth And Virus Infection.
Sci Rep V. 7 46045 2017
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close entry info
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Hetero Components
(2, 33)
Info
All Hetero Components
1a: SELENOMETHIONINE (MSEa)
1aa: SELENOMETHIONINE (MSEaa)
1ab: SELENOMETHIONINE (MSEab)
1ac: SELENOMETHIONINE (MSEac)
1ad: SELENOMETHIONINE (MSEad)
1ae: SELENOMETHIONINE (MSEae)
1af: SELENOMETHIONINE (MSEaf)
1ag: SELENOMETHIONINE (MSEag)
1ah: SELENOMETHIONINE (MSEah)
1ai: SELENOMETHIONINE (MSEai)
1aj: SELENOMETHIONINE (MSEaj)
1ak: SELENOMETHIONINE (MSEak)
1al: SELENOMETHIONINE (MSEal)
1am: SELENOMETHIONINE (MSEam)
1an: SELENOMETHIONINE (MSEan)
1ao: SELENOMETHIONINE (MSEao)
1ap: SELENOMETHIONINE (MSEap)
1aq: SELENOMETHIONINE (MSEaq)
1ar: SELENOMETHIONINE (MSEar)
1as: SELENOMETHIONINE (MSEas)
1at: SELENOMETHIONINE (MSEat)
1au: SELENOMETHIONINE (MSEau)
1av: SELENOMETHIONINE (MSEav)
1b: SELENOMETHIONINE (MSEb)
1c: SELENOMETHIONINE (MSEc)
1d: SELENOMETHIONINE (MSEd)
1e: SELENOMETHIONINE (MSEe)
1f: SELENOMETHIONINE (MSEf)
1g: SELENOMETHIONINE (MSEg)
1h: SELENOMETHIONINE (MSEh)
1i: SELENOMETHIONINE (MSEi)
1j: SELENOMETHIONINE (MSEj)
1k: SELENOMETHIONINE (MSEk)
1l: SELENOMETHIONINE (MSEl)
1m: SELENOMETHIONINE (MSEm)
1n: SELENOMETHIONINE (MSEn)
1o: SELENOMETHIONINE (MSEo)
1p: SELENOMETHIONINE (MSEp)
1q: SELENOMETHIONINE (MSEq)
1r: SELENOMETHIONINE (MSEr)
1s: SELENOMETHIONINE (MSEs)
1t: SELENOMETHIONINE (MSEt)
1u: SELENOMETHIONINE (MSEu)
1v: SELENOMETHIONINE (MSEv)
1w: SELENOMETHIONINE (MSEw)
1x: SELENOMETHIONINE (MSEx)
1y: SELENOMETHIONINE (MSEy)
1z: SELENOMETHIONINE (MSEz)
2a: N-ACETYL-D-GLUCOSAMINE (NAGa)
2b: N-ACETYL-D-GLUCOSAMINE (NAGb)
2c: N-ACETYL-D-GLUCOSAMINE (NAGc)
2d: N-ACETYL-D-GLUCOSAMINE (NAGd)
2e: N-ACETYL-D-GLUCOSAMINE (NAGe)
2f: N-ACETYL-D-GLUCOSAMINE (NAGf)
2g: N-ACETYL-D-GLUCOSAMINE (NAGg)
2h: N-ACETYL-D-GLUCOSAMINE (NAGh)
2i: N-ACETYL-D-GLUCOSAMINE (NAGi)
2j: N-ACETYL-D-GLUCOSAMINE (NAGj)
2k: N-ACETYL-D-GLUCOSAMINE (NAGk)
2l: N-ACETYL-D-GLUCOSAMINE (NAGl)
2m: N-ACETYL-D-GLUCOSAMINE (NAGm)
2n: N-ACETYL-D-GLUCOSAMINE (NAGn)
2o: N-ACETYL-D-GLUCOSAMINE (NAGo)
2p: N-ACETYL-D-GLUCOSAMINE (NAGp)
2q: N-ACETYL-D-GLUCOSAMINE (NAGq)
2r: N-ACETYL-D-GLUCOSAMINE (NAGr)
3a: ZINC ION (ZNa)
3b: ZINC ION (ZNb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
MSE
24
Mod. Amino Acid
SELENOMETHIONINE
2
NAG
9
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
3
ZN
-1
Ligand/Ion
ZINC ION
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC3 (SOFTWARE)
03: AC4 (SOFTWARE)
04: AC5 (SOFTWARE)
05: AC6 (SOFTWARE)
06: AC7 (SOFTWARE)
07: AC8 (SOFTWARE)
08: AC9 (SOFTWARE)
09: AD1 (SOFTWARE)
10: AD2 (SOFTWARE)
11: AD8 (SOFTWARE)
12: AE2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:383 , HIS A:387 , GLU A:406 , HOH A:1299
binding site for residue ZN A 1010
02
AC3
SOFTWARE
ASN A:82 , GLU A:172 , NAG A:1002
binding site for Mono-Saccharide NAG A 1009 bound to ASN A 82
03
AC4
SOFTWARE
ASN A:124 , GLN A:178 , HOH A:1222
binding site for Mono-Saccharide NAG A 1001 bound to ASN A 124
04
AC5
SOFTWARE
SER A:80 , ASN A:82 , ARG A:106 , ASN A:229 , THR A:266 , NAG A:1009
binding site for Mono-Saccharide NAG A 1002 bound to ASN A 229
05
AC6
SOFTWARE
LYS A:200 , ASN A:237 , GLU A:281 , HOH A:1186
binding site for Mono-Saccharide NAG A 1003 bound to ASN A 237
06
AC7
SOFTWARE
TYR A:311 , ASN A:314
binding site for Mono-Saccharide NAG A 1004 bound to ASN A 314
07
AC8
SOFTWARE
ASN A:328 , HIS A:500 , HOH A:1209 , NAG B:1008
binding site for Mono-Saccharide NAG A 1005 bound to ASN A 328
08
AC9
SOFTWARE
ALA A:223 , ASN A:506
binding site for Mono-Saccharide NAG A 1006 bound to ASN A 506
09
AD1
SOFTWARE
ASP A:428 , ASN A:622 , HOH A:1174 , HOH A:1216
binding site for Mono-Saccharide NAG A 1007 bound to ASN A 622
10
AD2
SOFTWARE
ASN A:646 , SER A:648 , VAL A:649
binding site for Mono-Saccharide NAG A 1008 bound to ASN A 646
11
AD8
SOFTWARE
ASP A:614 , ASN B:328 , HIS B:500
binding site for Mono-Saccharide NAG B 1005 bound to ASN B 328
12
AE2
SOFTWARE
NAG A:1005 , ASN B:646 , SER B:648 , VAL B:649
binding site for Mono-Saccharide NAG B 1008 bound to ASN B 646
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
(, 0)
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
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CATH Domains
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Pfam Domains
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Atom Selection
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Protein & NOT Site
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Chain A
Asymmetric Unit 1
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select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
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Show PDB file:
Asym.Unit (316 KB)
Header - Asym.Unit
Biol.Unit 1 (156 KB)
Header - Biol.Unit 1
Biol.Unit 2 (154 KB)
Header - Biol.Unit 2
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