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5LF7
Asym. Unit
Info
Asym.Unit (2.1 MB)
Biol.Unit 1, α-C (2.0 MB)
Biol.Unit 1 (2.0 MB)
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(1)
Title
:
HUMAN 20S PROTEASOME COMPLEX WITH IXAZOMIB AT 2.0 ANGSTROM
Authors
:
J. Schrader, F. Henneberg, R. Mata, K. Tittmann, T. R. Schneider, H. Sta G. Bourenkov, A. Chari
Date
:
30 Jun 16 (Deposition) - 17 Aug 16 (Release) - 21 Dec 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,a,b
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,a,b (1x)
Keywords
:
Proteasome, Multicatalytic Proteinase, Ntn-Hydrolase, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Schrader, F. Henneberg, R. A. Mata, K. Tittmann, T. R. Schneider, H. Stark, G. Bourenkov, A. Chari
The Inhibition Mechanism Of Human 20S Proteasomes Enables Next-Generation Inhibitor Design.
Science V. 353 594 2016
[
close entry info
]
Hetero Components
(7, 94)
Info
All Hetero Components
1a: PENTAETHYLENE GLYCOL (1PEa)
1b: PENTAETHYLENE GLYCOL (1PEb)
1c: PENTAETHYLENE GLYCOL (1PEc)
1d: PENTAETHYLENE GLYCOL (1PEd)
1e: PENTAETHYLENE GLYCOL (1PEe)
1f: PENTAETHYLENE GLYCOL (1PEf)
1g: PENTAETHYLENE GLYCOL (1PEg)
1h: PENTAETHYLENE GLYCOL (1PEh)
1i: PENTAETHYLENE GLYCOL (1PEi)
2a: (2~{R})-2-AZANYL-3-[(3~{R})-1-ETHY... (6V1a)
2b: (2~{R})-2-AZANYL-3-[(3~{R})-1-ETHY... (6V1b)
2c: (2~{R})-2-AZANYL-3-[(3~{R})-1-ETHY... (6V1c)
2d: (2~{R})-2-AZANYL-3-[(3~{R})-1-ETHY... (6V1d)
2e: (2~{R})-2-AZANYL-3-[(3~{R})-1-ETHY... (6V1e)
2f: (2~{R})-2-AZANYL-3-[(3~{R})-1-ETHY... (6V1f)
2g: (2~{R})-2-AZANYL-3-[(3~{R})-1-ETHY... (6V1g)
2h: (2~{R})-2-AZANYL-3-[(3~{R})-1-ETHY... (6V1h)
3a: [(1~{R})-1-[2-[[2,5-BIS(CHLORANYL)... (6V8a)
3b: [(1~{R})-1-[2-[[2,5-BIS(CHLORANYL)... (6V8b)
3c: [(1~{R})-1-[2-[[2,5-BIS(CHLORANYL)... (6V8c)
3d: [(1~{R})-1-[2-[[2,5-BIS(CHLORANYL)... (6V8d)
3e: [(1~{R})-1-[2-[[2,5-BIS(CHLORANYL)... (6V8e)
3f: [(1~{R})-1-[2-[[2,5-BIS(CHLORANYL)... (6V8f)
4a: CHLORIDE ION (CLa)
4aa: CHLORIDE ION (CLaa)
4ab: CHLORIDE ION (CLab)
4ac: CHLORIDE ION (CLac)
4ad: CHLORIDE ION (CLad)
4ae: CHLORIDE ION (CLae)
4af: CHLORIDE ION (CLaf)
4ag: CHLORIDE ION (CLag)
4ah: CHLORIDE ION (CLah)
4ai: CHLORIDE ION (CLai)
4aj: CHLORIDE ION (CLaj)
4ak: CHLORIDE ION (CLak)
4al: CHLORIDE ION (CLal)
4am: CHLORIDE ION (CLam)
4an: CHLORIDE ION (CLan)
4ao: CHLORIDE ION (CLao)
4ap: CHLORIDE ION (CLap)
4aq: CHLORIDE ION (CLaq)
4ar: CHLORIDE ION (CLar)
4as: CHLORIDE ION (CLas)
4at: CHLORIDE ION (CLat)
4au: CHLORIDE ION (CLau)
4av: CHLORIDE ION (CLav)
4aw: CHLORIDE ION (CLaw)
4ax: CHLORIDE ION (CLax)
4ay: CHLORIDE ION (CLay)
4b: CHLORIDE ION (CLb)
4c: CHLORIDE ION (CLc)
4d: CHLORIDE ION (CLd)
4e: CHLORIDE ION (CLe)
4f: CHLORIDE ION (CLf)
4g: CHLORIDE ION (CLg)
4h: CHLORIDE ION (CLh)
4i: CHLORIDE ION (CLi)
4j: CHLORIDE ION (CLj)
4k: CHLORIDE ION (CLk)
4l: CHLORIDE ION (CLl)
4m: CHLORIDE ION (CLm)
4n: CHLORIDE ION (CLn)
4o: CHLORIDE ION (CLo)
4p: CHLORIDE ION (CLp)
4q: CHLORIDE ION (CLq)
4r: CHLORIDE ION (CLr)
4s: CHLORIDE ION (CLs)
4t: CHLORIDE ION (CLt)
4u: CHLORIDE ION (CLu)
4v: CHLORIDE ION (CLv)
4w: CHLORIDE ION (CLw)
4x: CHLORIDE ION (CLx)
4y: CHLORIDE ION (CLy)
4z: CHLORIDE ION (CLz)
5a: POTASSIUM ION (Ka)
5b: POTASSIUM ION (Kb)
5c: POTASSIUM ION (Kc)
5d: POTASSIUM ION (Kd)
5e: POTASSIUM ION (Ke)
5f: POTASSIUM ION (Kf)
6a: MAGNESIUM ION (MGa)
6b: MAGNESIUM ION (MGb)
6c: MAGNESIUM ION (MGc)
6d: MAGNESIUM ION (MGd)
6e: MAGNESIUM ION (MGe)
6f: MAGNESIUM ION (MGf)
6g: MAGNESIUM ION (MGg)
6h: MAGNESIUM ION (MGh)
6i: MAGNESIUM ION (MGi)
6j: MAGNESIUM ION (MGj)
7a: S-(2-AMINO-2-OXOETHYL)-L-CYSTEINE (YCMa)
7b: S-(2-AMINO-2-OXOETHYL)-L-CYSTEINE (YCMb)
7c: S-(2-AMINO-2-OXOETHYL)-L-CYSTEINE (YCMc)
7d: S-(2-AMINO-2-OXOETHYL)-L-CYSTEINE (YCMd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
1PE
9
Ligand/Ion
PENTAETHYLENE GLYCOL
2
6V1
8
Mod. Amino Acid
(2~{R})-2-AZANYL-3-[(3~{R})-1-ETHYL-2,5-BIS(OXIDANYLIDENE)PYRROLIDIN-3-YL]SULFANYL-PROPANOICACID
3
6V8
6
Ligand/Ion
[(1~{R})-1-[2-[[2,5-BIS(CHLORANYL)PHENYL]CARBONYLAMINO]ETHANOYLAMINO]-3-METHYL-BUTYL]BORONIC ACID
4
CL
51
Ligand/Ion
CHLORIDE ION
5
K
6
Ligand/Ion
POTASSIUM ION
6
MG
10
Ligand/Ion
MAGNESIUM ION
7
YCM
4
Mod. Amino Acid
S-(2-AMINO-2-OXOETHYL)-L-CYSTEINE
[
close Hetero Component info
]
Sites
(82, 82)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
20: AE2 (SOFTWARE)
21: AE3 (SOFTWARE)
22: AE4 (SOFTWARE)
23: AE5 (SOFTWARE)
24: AE6 (SOFTWARE)
25: AE7 (SOFTWARE)
26: AE8 (SOFTWARE)
27: AE9 (SOFTWARE)
28: AF1 (SOFTWARE)
29: AF2 (SOFTWARE)
30: AF3 (SOFTWARE)
31: AF4 (SOFTWARE)
32: AF5 (SOFTWARE)
33: AF6 (SOFTWARE)
34: AF7 (SOFTWARE)
35: AF8 (SOFTWARE)
36: AF9 (SOFTWARE)
37: AG1 (SOFTWARE)
38: AG2 (SOFTWARE)
39: AG3 (SOFTWARE)
40: AG4 (SOFTWARE)
41: AG5 (SOFTWARE)
42: AG6 (SOFTWARE)
43: AG7 (SOFTWARE)
44: AG8 (SOFTWARE)
45: AG9 (SOFTWARE)
46: AH1 (SOFTWARE)
47: AH2 (SOFTWARE)
48: AH3 (SOFTWARE)
49: AH4 (SOFTWARE)
50: AH5 (SOFTWARE)
51: AH6 (SOFTWARE)
52: AH7 (SOFTWARE)
53: AH8 (SOFTWARE)
54: AH9 (SOFTWARE)
55: AI1 (SOFTWARE)
56: AI2 (SOFTWARE)
57: AI3 (SOFTWARE)
58: AI4 (SOFTWARE)
59: AI5 (SOFTWARE)
60: AI6 (SOFTWARE)
61: AI7 (SOFTWARE)
62: AI8 (SOFTWARE)
63: AI9 (SOFTWARE)
64: AJ1 (SOFTWARE)
65: AJ2 (SOFTWARE)
66: AJ3 (SOFTWARE)
67: AJ4 (SOFTWARE)
68: AJ5 (SOFTWARE)
69: AJ6 (SOFTWARE)
70: AJ7 (SOFTWARE)
71: AJ8 (SOFTWARE)
72: AJ9 (SOFTWARE)
73: AK1 (SOFTWARE)
74: AK2 (SOFTWARE)
75: AK3 (SOFTWARE)
76: AK4 (SOFTWARE)
77: AK5 (SOFTWARE)
78: AK6 (SOFTWARE)
79: AK7 (SOFTWARE)
80: AK8 (SOFTWARE)
81: AK9 (SOFTWARE)
82: AL1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
SER A:6 , HOH A:473 , ARG C:5 , HOH C:418
binding site for residue CL A 301
02
AC2
SOFTWARE
ARG A:219
binding site for residue CL A 302
03
AC3
SOFTWARE
HIS A:87 , ARG A:90 , HOH H:465
binding site for residue CL A 303
04
AC4
SOFTWARE
HOH A:472 , HOH A:489
binding site for residue CL A 304
05
AC5
SOFTWARE
GLU B:70 , GLN B:95 , CL B:302 , HOH B:495 , HOH I:542
binding site for residue CL B 301
06
AC6
SOFTWARE
CL B:301 , HOH B:462
binding site for residue CL B 302
07
AC7
SOFTWARE
ILE C:161 , GLY C:162
binding site for residue CL C 301
08
AC8
SOFTWARE
ARG C:86 , ARG C:117 , HOH C:415
binding site for residue CL C 302
09
AC9
SOFTWARE
ILE D:31 , ILE D:170 , GLY D:171 , SER D:174 , HOH D:427
binding site for residue CL D 301
10
AD1
SOFTWARE
THR D:161 , HOH D:418 , LEU E:77 , THR E:78
binding site for residue CL D 302
11
AD2
SOFTWARE
6V1 E:148 , ILE E:161 , GLY E:162 , SER E:165 , HOH E:514
binding site for residue CL E 301
12
AD3
SOFTWARE
SER E:150
binding site for residue CL E 302
13
AD4
SOFTWARE
GLY E:32 , SER E:33 , LYS E:62 , GLY E:76
binding site for residue CL E 303
14
AD5
SOFTWARE
VAL F:30 , ILE F:165 , GLY F:166 , ARG F:169 , HOH F:401 , HOH F:458
binding site for residue CL F 301
15
AD6
SOFTWARE
HOH G:422 , HOH G:519 , HOH N:461
binding site for residue CL G 301
16
AD7
SOFTWARE
LYS G:186 , GLU G:192 , GLN G:193 , THR G:197
binding site for residue CL G 302
17
AD8
SOFTWARE
THR G:14 , TYR G:125 , ASN G:128 , MET G:131 , HOH G:510
binding site for residue K G 303
18
AD9
SOFTWARE
GLN H:92 , HOH H:542 , ASP N:94 , HOH N:438 , HOH N:489 , HOH N:515
binding site for residue MG H 301
19
AE1
SOFTWARE
ILE H:164 , ASP H:167 , SER H:170 , ASP Z:213 , HOH Z:516
binding site for residue MG H 302
20
AE2
SOFTWARE
ASN H:81 , ARG H:82 , HOH H:524 , HOH N:416
binding site for residue CL H 303
21
AE3
SOFTWARE
SER H:130 , HOH H:460 , THR N:23 , PHE Z:33 , TYR a:141 , TYR a:144
binding site for residue 1PE H 304
22
AE4
SOFTWARE
THR H:2 , ALA H:21 , THR H:22 , GLU H:23 , CYS H:32 , ALA H:47 , GLY H:48 , THR H:49 , ALA H:50 , THR H:53 , HOH H:415 , HOH H:454 , HOH H:472 , ASP I:124
binding site for residue 6V8 H 305
23
AE5
SOFTWARE
VAL I:174 , ASP I:177 , SER I:180 , HOH I:442 , HOH I:474
binding site for residue MG I 301
24
AE6
SOFTWARE
ARG I:65 , ARG I:69
binding site for residue CL I 302
25
AE7
SOFTWARE
GLU I:96 , LYS I:97 , ASP J:90
binding site for residue 1PE I 303
26
AE8
SOFTWARE
LEU H:59 , TYR H:91 , TYR I:95 , GLU I:96
binding site for residue 1PE I 304
27
AE9
SOFTWARE
ASP I:204 , THR Y:165 , ASP Y:168 , SER Y:171 , HOH Y:511
binding site for residue MG I 305
28
AF1
SOFTWARE
HOH J:412 , HOH J:463 , HOH J:466 , HOH J:514 , HOH J:528 , HOH K:487
binding site for residue MG J 301
29
AF2
SOFTWARE
THR K:165 , ASP K:168 , SER K:171 , ASP W:204 , HOH W:460
binding site for residue MG K 301
30
AF3
SOFTWARE
LYS K:33 , ASN K:176
binding site for residue CL K 302
31
AF4
SOFTWARE
TYR K:67 , ARG K:70
binding site for residue CL K 303
32
AF5
SOFTWARE
ILE K:122 , SER K:123
binding site for residue CL K 304
33
AF6
SOFTWARE
THR K:2 , ALA K:21 , THR K:22 , GLY K:48 , ALA K:50 , HOH K:410 , HOH K:441 , ASP L:125 , HOH L:409
binding site for residue 6V8 K 305
34
AF7
SOFTWARE
PHE K:55 , SER L:98 , PHE L:101 , HOH L:478
binding site for residue 1PE L 301
35
AF8
SOFTWARE
ALA L:183 , ASP L:186 , THR L:189 , HOH L:480
binding site for residue K L 302
36
AF9
SOFTWARE
ASP L:213 , HOH L:482 , ILE V:164 , ASP V:167 , SER V:170
binding site for residue MG L 303
37
AG1
SOFTWARE
ARG M:37 , ASN M:38 , ILE M:39 , HOH N:440
binding site for residue CL M 301
38
AG2
SOFTWARE
ARG M:35 , CL M:303 , GLY N:98 , GLY N:129 , GLY N:130
binding site for residue CL M 302
39
AG3
SOFTWARE
TYR M:30 , ARG M:35 , CL M:302 , MET N:117
binding site for residue CL M 303
40
AG4
SOFTWARE
ARG M:44 , HOH M:448
binding site for residue CL M 304
41
AG5
SOFTWARE
PHE L:33 , TYR M:141 , TYR M:144 , THR b:23
binding site for residue 1PE M 305
42
AG6
SOFTWARE
THR N:32 , ARG N:46 , GLN N:54 , 6V8 N:305
binding site for residue CL N 301
43
AG7
SOFTWARE
ARG N:20 , ARG N:30 , GLY N:172 , GLY N:173 , HOH a:443
binding site for residue CL N 302
44
AG8
SOFTWARE
TYR G:103 , PHE H:89 , GLN H:92 , TYR N:91 , LEU N:95 , HOH N:449 , HOH N:480 , HOH N:488
binding site for residue 1PE N 303
45
AG9
SOFTWARE
MET N:165 , ASP N:168 , SER N:171 , HOH N:512 , HOH N:538
binding site for residue K N 304
46
AH1
SOFTWARE
TYR H:115 , THR N:2 , THR N:21 , THR N:22 , ALA N:28 , ARG N:46 , GLY N:48 , ALA N:50 , THR N:53 , SER N:170 , CL N:301 , HOH N:431 , HOH N:432 , HOH N:483
binding site for residue 6V8 N 305
47
AH2
SOFTWARE
SER O:6 , PHE O:7 , ARG Q:5 , HOH Q:441
binding site for residue CL O 301
48
AH3
SOFTWARE
TYR O:100
binding site for residue CL O 302
49
AH4
SOFTWARE
ARG O:219
binding site for residue CL O 303
50
AH5
SOFTWARE
ARG O:90
binding site for residue CL O 304
51
AH6
SOFTWARE
GLU P:70 , GLN P:95 , HOH P:511
binding site for residue CL P 301
52
AH7
SOFTWARE
ARG Q:95 , GLU Q:99 , ASP Q:100
binding site for residue CL Q 301
53
AH8
SOFTWARE
VAL Q:26 , ILE Q:161 , GLY Q:162 , HOH Q:414
binding site for residue CL Q 302
54
AH9
SOFTWARE
ILE R:31 , ILE R:170 , GLY R:171 , SER R:174 , HOH R:465 , HOH R:507
binding site for residue CL R 301
55
AI1
SOFTWARE
THR R:161 , THR S:78
binding site for residue CL R 302
56
AI2
SOFTWARE
ILE S:161 , GLY S:162 , SER S:165 , HOH S:503
binding site for residue CL S 301
57
AI3
SOFTWARE
SER S:150 , HOH S:449
binding site for residue CL S 302
58
AI4
SOFTWARE
GLY S:32 , SER S:33 , LYS S:62 , ALA S:75 , GLY S:76
binding site for residue CL S 303
59
AI5
SOFTWARE
HOH U:415 , HOH U:476 , HOH b:446
binding site for residue CL U 301
60
AI6
SOFTWARE
THR U:14 , TYR U:125 , ASN U:128 , MET U:131 , HOH U:479
binding site for residue K U 302
61
AI7
SOFTWARE
GLN V:92 , HOH V:495 , ASP b:52 , ASP b:94 , HOH b:406 , HOH b:418 , HOH b:426 , HOH b:493
binding site for residue MG V 301
62
AI8
SOFTWARE
ASN V:81 , ARG V:82
binding site for residue CL V 302
63
AI9
SOFTWARE
VAL W:174 , ASP W:177 , SER W:180 , HOH W:453 , HOH W:485
binding site for residue MG W 301
64
AJ1
SOFTWARE
ARG W:65 , ARG W:69
binding site for residue CL W 302
65
AJ2
SOFTWARE
GLU W:96 , LYS W:97 , HOH W:449
binding site for residue 1PE W 303
66
AJ3
SOFTWARE
HOH X:410 , HOH X:437 , HOH X:464 , HOH X:508 , HOH X:523 , HOH Y:504
binding site for residue MG X 301
67
AJ4
SOFTWARE
TYR Y:67 , ARG Y:70 , HOH Y:514
binding site for residue CL Y 301
68
AJ5
SOFTWARE
LYS Y:33 , ASN Y:176
binding site for residue CL Y 302
69
AJ6
SOFTWARE
ILE Y:122 , SER Y:123
binding site for residue CL Y 303
70
AJ7
SOFTWARE
HOH J:434 , ASP Y:155 , HOH Y:493
binding site for residue CL Y 304
71
AJ8
SOFTWARE
PHE Y:55 , HOH Y:460 , TYR Z:97 , SER Z:98 , PHE Z:101
binding site for residue 1PE Y 305
72
AJ9
SOFTWARE
ALA Z:183 , ASP Z:186 , THR Z:189 , HOH Z:459
binding site for residue K Z 301
73
AK1
SOFTWARE
PHE a:36 , ARG a:37 , ASN a:38 , ILE a:39 , HOH b:485
binding site for residue CL a 301
74
AK2
SOFTWARE
ARG a:35 , CL a:303 , SER b:47 , GLY b:98 , GLY b:129 , GLY b:130
binding site for residue CL a 302
75
AK3
SOFTWARE
TYR a:30 , ARG a:35 , CL a:302 , PRO b:116 , MET b:117
binding site for residue CL a 303
76
AK4
SOFTWARE
ARG a:44
binding site for residue CL a 304
77
AK5
SOFTWARE
HOH M:438 , ARG b:20 , ARG b:30 , GLY b:172 , GLY b:173
binding site for residue CL b 301
78
AK6
SOFTWARE
PHE V:89 , TYR b:91 , HOH b:511
binding site for residue 1PE b 302
79
AK7
SOFTWARE
MET b:165 , ASP b:168 , SER b:171 , HOH b:502 , HOH b:508
binding site for residue K b 303
80
AK8
SOFTWARE
THR V:3 , ILE V:4 , ASP V:18 , ALA V:21 , THR V:22 , GLU V:23 , CYS V:32 , LYS V:34 , ALA V:47 , GLY V:48 , THR V:49 , ALA V:50 , THR V:53 , GLY V:129 , SER V:130 , GLY V:131 , GLY V:169 , SER V:170 , HOH V:405 , HOH V:437 , HOH V:449 , ASP W:124
binding site for Di-peptide 6V8 V 303 and THR V 2
81
AK9
SOFTWARE
THR Y:3 , ASP Y:18 , ALA Y:21 , THR Y:22 , LYS Y:34 , MET Y:46 , ALA Y:47 , GLY Y:48 , ALA Y:50 , GLY Y:130 , SER Y:131 , GLY Y:132 , TYR Y:170 , SER Y:171 , HOH Y:437 , HOH Y:462 , ASP Z:125 , HOH Z:406
binding site for Di-peptide 6V8 Y 306 and THR Y 2
82
AL1
SOFTWARE
TYR V:115 , THR b:3 , ASP b:18 , THR b:21 , THR b:22 , ALA b:28 , LYS b:34 , ARG b:46 , SER b:47 , GLY b:48 , ALA b:50 , THR b:53 , GLY b:130 , SER b:131 , GLY b:132 , SER b:170 , SER b:171 , HOH b:410 , HOH b:417 , HOH b:461
binding site for Di-peptide 6V8 b 304 and THR b 2
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
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Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
All SCOP Domains
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Label:
Sorry, no Info available
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Chain E
Chain F
Chain G
Chain H
Chain I
Chain J
Chain K
Chain L
Chain M
Chain N
Chain O
Chain P
Chain Q
Chain R
Chain S
Chain T
Chain U
Chain V
Chain W
Chain X
Chain Y
Chain Z
Chain a
Chain b
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
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close
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RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (2.1 MB)
Header - Asym.Unit
Biol.Unit 1 (2.0 MB)
Header - Biol.Unit 1
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You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
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